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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ORC5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
28.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
17.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ORC5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
14.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
5.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.7
965
Tumor
1.6
131
Tumor
1.3
425
Tumor
1.3
661
Tumor
1.1
351
Tumor
1.0
313
Tumor
1.0
957
Tumor
1.0
343
Tumor
1.0
567
Tumor
0.9
463
Tumor
0.9
573
Tumor
0.9
297
Tumor
0.9
227
Tumor
0.9
277
Tumor
0.9
427
Tumor
0.9
951
Tumor
0.9
1021
Tumor
0.9
367
Tumor
0.8
881
Tumor
0.8
357
Tumor
0.8
983
Tumor
0.8
171
Tumor
0.8
724
Normal
0.8
815
Tumor
0.7
671
Tumor
0.7
953
Tumor
0.7
571
Tumor
0.7
285
Tumor
0.7
123
Tumor
0.7
487
Tumor
0.7
411
Tumor
0.7
271
Tumor
0.7
385
Tumor
0.6
431
Tumor
0.6
331
Tumor
0.6
1013
Tumor
0.6
977
Tumor
0.6
1031
Tumor
0.6
413
Tumor
0.6
943
Tumor
0.6
217
Tumor
0.6
127
Tumor
0.6
877
Tumor
0.6
925
Tumor
0.6
967
Tumor
0.6
863
Tumor
0.6
391
Tumor
0.6
923
Tumor
0.6
921
Tumor
0.6
387
Tumor
0.5
483
Tumor
0.5
283
Tumor
0.5
917
Tumor
0.5
213
Tumor
0.5
635
Tumor
0.5
963
Tumor
0.5
975
Tumor
0.5
647
Tumor
0.5
161
Tumor
0.5
375
Tumor
0.5
491
Tumor
0.5
641
Tumor
0.5
497
Tumor
0.4
435
Tumor
0.4
665
Tumor
0.4
1015
Tumor
0.4
192
Normal
0.4
926
Normal
0.4
922
Normal
0.4
473
Tumor
0.4
221
Tumor
0.4
383
Tumor
0.4
341
Tumor
0.4
455
Tumor
0.4
883
Tumor
0.4
537
Tumor
0.4
517
Tumor
0.4
211
Tumor
0.4
125
Tumor
0.4
813
Tumor
0.3
191
Tumor
0.3
814
Normal
0.3
737
Tumor
0.3
615
Tumor
0.3
433
Tumor
0.3
695
Tumor
0.3
447
Tumor
0.3
355
Tumor
0.3
535
Tumor
0.3
267
Tumor
0.3
533
Tumor
0.3
135
Tumor
0.3
365
Tumor
0.3
493
Tumor
0.3
523
Tumor
0.3
697
Tumor
0.3
393
Tumor
0.2
553
Tumor
0.2
361
Tumor
0.2
195
Tumor
0.2
937
Tumor
0.2
112
Tumor
0.2
141
Tumor
0.2
1043
Tumor
0.2
465
Tumor
0.2
546
Normal
0.2
113
Tumor
0.2
713
Tumor
0.2
384
Normal
0.1
741
Tumor
0.1
525
Tumor
0.1
395
Tumor
0.1
231
Tumor
0.1
147
Tumor
0.1
817
Tumor
0.1
916
Normal
0.1
663
Tumor
0.1
354
Normal
0.1
187
Tumor
0.1
363
Tumor
0.1
534
Normal
0.1
461
Tumor
0.1
311
Tumor
0.1
332
Normal
0.1
823
Tumor
0.1
423
Tumor
0.1
873
Tumor
0.1
185
Tumor
0.1
913
Tumor
0.1
443
Tumor
0.1
467
Tumor
0.0
415
Tumor
0.0
257
Tumor
0.0
924
Normal
0.0
278
Normal
0.0
1027
Tumor
0.0
353
Tumor
0.0
727
Tumor
0.0
1045
Tumor
0.0
777
Tumor
0.0
516
Normal
0.0
444
Normal
0.0
1025
Tumor
0.0
554
Normal
0.0
268
Normal
0.0
126
Normal
0.0
563
Tumor
0.0
314
Normal
0.0
1014
Normal
0.0
471
Tumor
0.0
352
Normal
0.0
388
Normal
0.0
386
Normal
0.0
445
Tumor
0.0
222
Normal
0.0
466
Normal
0.0
451
Tumor
0.0
396
Normal
-0.1
978
Normal
-0.1
628
Normal
-0.1
744
Normal
-0.1
524
Normal
-0.1
527
Tumor
-0.1
366
Normal
-0.1
456
Normal
-0.1
617
Tumor
-0.1
982
Normal
-0.1
446
Normal
-0.1
432
Normal
-0.1
918
Normal
-0.1
477
Tumor
-0.1
421
Tumor
-0.1
344
Normal
-0.1
636
Normal
-0.1
392
Normal
-0.1
721
Tumor
-0.1
984
Normal
-0.1
956
Normal
-0.1
196
Normal
-0.1
312
Normal
-0.1
434
Normal
-0.1
114
Normal
-0.1
368
Normal
-0.1
627
Tumor
-0.1
414
Normal
-0.1
911
Tumor
-0.1
364
Normal
-0.1
137
Tumor
-0.1
394
Normal
-0.1
484
Normal
-0.1
915
Tumor
-0.1
416
Normal
-0.1
981
Tumor
-0.1
874
Normal
-0.1
128
Normal
-0.1
866
Normal
-0.1
574
Normal
-0.1
514
Normal
-0.1
642
Normal
-0.1
223
Tumor
-0.1
298
Normal
-0.1
538
Normal
-0.1
214
Normal
-0.2
867
Tumor
-0.2
468
Normal
-0.2
958
Normal
-0.2
616
Normal
-0.2
672
Normal
-0.2
662
Normal
-0.2
568
Normal
-0.2
218
Normal
-0.2
914
Normal
-0.2
358
Normal
-0.2
426
Normal
-0.2
424
Normal
-0.2
362
Normal
-0.2
376
Normal
-0.2
138
Normal
-0.2
498
Normal
-0.2
428
Normal
-0.2
528
Normal
-0.2
938
Normal
-0.2
232
Normal
-0.2
436
Normal
-0.2
861
Tumor
-0.2
464
Normal
-0.2
955
Tumor
-0.2
884
Normal
-0.2
188
Normal
-0.2
868
Normal
-0.2
857
Tumor
-0.2
1016
Normal
-0.2
356
Normal
-0.2
852
Normal
-0.2
698
Normal
-0.2
685
Tumor
-0.2
745
Tumor
-0.2
1046
Normal
-0.2
328
Normal
-0.2
494
Normal
-0.2
492
Normal
-0.2
515
Tumor
-0.2
966
Normal
-0.2
954
Normal
-0.2
478
Normal
-0.2
488
Normal
-0.2
132
Normal
-0.2
1022
Normal
-0.2
785
Tumor
-0.2
851
Tumor
-0.3
976
Normal
-0.3
964
Normal
-0.3
146
Normal
-0.3
865
Tumor
-0.3
862
Normal
-0.3
258
Normal
-0.3
618
Normal
-0.3
422
Normal
-0.3
327
Tumor
-0.3
142
Normal
-0.3
545
Tumor
-0.3
818
Normal
-0.3
412
Normal
-0.3
786
Normal
-0.3
1042
Normal
-0.3
864
Normal
-0.3
1032
Normal
-0.3
756
Normal
-0.3
261
Tumor
-0.3
944
Normal
-0.3
342
Normal
-0.3
564
Normal
-0.3
136
Normal
-0.3
664
Normal
-0.3
1044
Normal
-0.3
882
Normal
-0.3
124
Normal
-0.3
518
Normal
-0.3
186
Normal
-0.3
666
Normal
-0.3
145
Tumor
-0.3
858
Normal
-0.3
722
Normal
-0.3
224
Normal
-0.3
1028
Normal
-0.3
162
Normal
-0.3
148
Normal
-0.3
272
Normal
-0.3
262
Normal
-0.3
648
Normal
-0.3
728
Normal
-0.3
1041
Tumor
-0.3
284
Normal
-0.3
686
Normal
-0.3
557
Tumor
-0.3
481
Tumor
-0.3
878
Normal
-0.4
824
Normal
-0.4
228
Normal
-0.4
172
Normal
-0.4
286
Normal
-0.4
526
Normal
-0.4
513
Tumor
-0.4
952
Normal
-0.4
716
Normal
-0.4
482
Normal
-0.4
448
Normal
-0.4
755
Tumor
-0.4
968
Normal
-0.4
714
Normal
-0.4
462
Normal
-0.4
1026
Normal
-0.4
472
Normal
-0.4
452
Normal
-0.4
912
Normal
-0.4
111
Normal
-0.4
558
Normal
-0.5
778
Normal
-0.5
572
Normal
-0.5
816
Normal
-0.5
738
Normal
-0.5
715
Tumor
-0.5
536
Normal
-0.5
212
Normal
-0.5
474
Normal
-0.5
746
Normal
-0.5
742
Normal
-0.6
723
Tumor
-0.6
696
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
