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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRI3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
97.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
330.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
309.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
294.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
294.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
261.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
251.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
248.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
229.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
226.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
222.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
217.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
207.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
207.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
203.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
198.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
197.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
194.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
193.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
192.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
191.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
190.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
186.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
182.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
181.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
180.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
173.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
171.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
168.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
166.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
164.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
163.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
162.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
161.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
161.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
160.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
159.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
157.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
156.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
156.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
155.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
154.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
154.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
153.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
152.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
151.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
150.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
150.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
149.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
147.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
147.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
146.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
146.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
145.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
145.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
144.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
144.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
144.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
143.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
143.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
143.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
139.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
139.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
138.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
137.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
136.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
136.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
135.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
135.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
134.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
133.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
132.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
132.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
132.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
132.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
130.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
130.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
129.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
129.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
129.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
128.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
127.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
127.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
127.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
126.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
126.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
125.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
125.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
125.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
125.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
125.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
123.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
122.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
122.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
122.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
121.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
121.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
120.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
120.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
120.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
119.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
119.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
118.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
118.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
118.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
117.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
115.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
114.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
113.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
113.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
113.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
112.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
112.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
112.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
112.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
112.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
112.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
111.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
110.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
110.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
110.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
110.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
109.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
109.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
109.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
109.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
108.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
108.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
106.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
105.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
105.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
105.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
105.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
105.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
103.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
101.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
101.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
100.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
100.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
100.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
100.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
99.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
99.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
99.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
99.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
99.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
98.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
98.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
98.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
98.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
98.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
97.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
97.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
96.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
95.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
95.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
94.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
94.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
94.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
94.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
94.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
94.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
93.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
93.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
93.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
92.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
92.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
92.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
91.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
90.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
90.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
90.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
89.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
89.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
89.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
88.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
88.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
88.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
88.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
87.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
86.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
86.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
86.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
85.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
85.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
85.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
85.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
84.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
84.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
84.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
83.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
83.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
82.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
82.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
82.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
82.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
81.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
81.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
80.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
80.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
80.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
80.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
79.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
79.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
78.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
78.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
78.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
78.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
78.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
77.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
77.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
76.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
76.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
76.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
76.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
76.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
75.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
75.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
75.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
75.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
75.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
75.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
74.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
74.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
74.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
74.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
73.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
73.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
73.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
72.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
72.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
72.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
72.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
71.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
71.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
71.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
71.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
71.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
70.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
70.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
69.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
68.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
68.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
68.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
68.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
67.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
67.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
67.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
67.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
67.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
67.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
67.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
66.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
66.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
66.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
66.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
65.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
65.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
64.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
64.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
63.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
62.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
62.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
62.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
61.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
61.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
61.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
61.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
61.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
61.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
60.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
60.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
60.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
59.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
59.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
59.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
59.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
59.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
59.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
58.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
57.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
57.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
57.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
57.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
56.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
56.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
55.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
55.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
55.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
54.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
54.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
53.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
52.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
52.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
51.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
50.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
50.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
50.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
49.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
48.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
48.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
48.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
47.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
47.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
46.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
46.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
46.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
45.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
45.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
44.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
42.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
42.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
38.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
36.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
34.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
33.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
22.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
21.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
19.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BRI3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
165.1
Number of samples
231
Samples
Sample
Description
TPM
DO45131
0 years, male, NA, stage:4, dead, 360 days
823.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
714.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
670.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
617.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
607.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
568.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
497.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
399.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
389.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
360.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
356.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
354.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
352.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
336.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
307.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
297.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
291.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
286.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
286.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
282.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
276.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
276.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
275.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
273.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
267.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
261.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
257.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
256.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
247.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
241.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
240.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
233.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
231.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
230.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
229.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
229.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
229.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
222.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
220.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
218.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
214.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
212.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
212.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
211.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
209.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
209.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
207.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
205.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
203.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
203.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
202.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
201.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
198.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
197.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
195.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
194.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
191.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
191.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
190.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
188.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
188.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
185.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
184.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
182.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
181.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
181.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
180.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
180.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
180.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
179.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
178.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
177.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
175.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
174.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
174.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
173.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
173.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
172.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
172.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
172.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
170.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
170.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
168.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
167.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
167.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
166.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
163.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
162.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
161.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
160.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
159.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
159.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
158.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
157.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
156.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
155.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
154.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
151.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
151.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
150.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
150.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
150.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
148.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
147.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
147.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
146.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
146.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
146.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
145.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
142.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
142.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
141.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
140.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
140.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
140.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
139.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
139.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
136.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
136.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
136.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
136.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
135.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
134.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
134.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
133.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
133.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
131.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
130.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
130.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
130.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
128.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
128.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
128.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
127.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
127.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
127.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
126.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
125.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
125.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
124.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
124.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
124.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
123.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
122.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
122.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
120.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
120.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
118.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
118.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
118.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
118.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
118.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
117.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
116.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
114.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
114.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
112.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
111.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
111.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
111.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
111.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
111.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
111.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
110.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
110.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
108.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
107.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
107.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
107.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
106.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
105.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
105.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
102.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
102.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
102.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
101.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
99.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
99.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
98.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
96.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
95.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
95.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
90.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
90.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
89.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
88.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
88.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
88.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
86.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
86.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
85.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
84.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
83.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
82.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
82.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
81.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
79.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
79.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
78.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
77.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
77.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
75.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
75.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
75.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
75.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
74.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
69.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
68.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
67.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
66.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
64.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
64.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
63.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
63.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
63.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
61.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
60.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
58.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
56.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
55.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
52.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
49.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
47.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
45.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
42.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
666
Normal
1.1
471
Tumor
1.1
312
Normal
0.9
313
Tumor
0.9
343
Tumor
0.9
147
Tumor
0.8
387
Tumor
0.8
257
Tumor
0.8
271
Tumor
0.7
425
Tumor
0.7
535
Tumor
0.7
635
Tumor
0.7
421
Tumor
0.7
277
Tumor
0.7
298
Normal
0.7
331
Tumor
0.6
955
Tumor
0.6
1046
Normal
0.6
342
Normal
0.6
477
Tumor
0.6
648
Normal
0.6
627
Tumor
0.6
481
Tumor
0.6
491
Tumor
0.6
396
Normal
0.6
314
Normal
0.6
697
Tumor
0.6
222
Normal
0.5
354
Normal
0.5
617
Tumor
0.5
385
Tumor
0.5
363
Tumor
0.5
1025
Tumor
0.5
911
Tumor
0.5
124
Normal
0.5
664
Normal
0.5
311
Tumor
0.5
745
Tumor
0.5
786
Normal
0.5
353
Tumor
0.5
615
Tumor
0.5
223
Tumor
0.5
926
Normal
0.5
698
Normal
0.5
232
Normal
0.5
448
Normal
0.4
488
Normal
0.4
428
Normal
0.4
877
Tumor
0.4
366
Normal
0.4
952
Normal
0.4
536
Normal
0.4
746
Normal
0.4
482
Normal
0.4
365
Tumor
0.4
1043
Tumor
0.4
278
Normal
0.4
394
Normal
0.4
424
Normal
0.4
283
Tumor
0.4
445
Tumor
0.4
1045
Tumor
0.4
386
Normal
0.4
195
Tumor
0.3
196
Normal
0.3
172
Normal
0.3
778
Normal
0.3
395
Tumor
0.3
943
Tumor
0.3
111
Normal
0.3
217
Tumor
0.3
642
Normal
0.3
616
Normal
0.3
443
Tumor
0.3
917
Tumor
0.3
671
Tumor
0.3
148
Normal
0.3
358
Normal
0.3
125
Tumor
0.3
452
Normal
0.3
162
Normal
0.3
662
Normal
0.3
231
Tumor
0.3
297
Tumor
0.3
714
Normal
0.3
553
Tumor
0.3
426
Normal
0.3
515
Tumor
0.3
1044
Normal
0.3
221
Tumor
0.3
554
Normal
0.3
413
Tumor
0.3
392
Normal
0.3
258
Normal
0.3
641
Tumor
0.2
375
Tumor
0.2
568
Normal
0.2
272
Normal
0.2
368
Normal
0.2
362
Normal
0.2
436
Normal
0.2
422
Normal
0.2
135
Tumor
0.2
344
Normal
0.2
516
Normal
0.2
192
Normal
0.2
462
Normal
0.2
376
Normal
0.2
414
Normal
0.2
716
Normal
0.2
618
Normal
0.2
518
Normal
0.2
388
Normal
0.2
473
Tumor
0.2
447
Tumor
0.2
132
Normal
0.2
474
Normal
0.2
456
Normal
0.2
573
Tumor
0.2
743
Tumor
0.2
446
Normal
0.2
918
Normal
0.2
224
Normal
0.2
777
Tumor
0.1
967
Tumor
0.1
737
Tumor
0.1
922
Normal
0.1
472
Normal
0.1
435
Tumor
0.1
686
Normal
0.1
218
Normal
0.1
721
Tumor
0.1
114
Normal
0.1
466
Normal
0.1
352
Normal
0.1
534
Normal
0.1
212
Normal
0.1
136
Normal
0.1
514
Normal
0.1
756
Normal
0.1
268
Normal
0.1
191
Tumor
0.1
661
Tumor
0.1
391
Tumor
0.1
455
Tumor
0.1
696
Normal
0.1
628
Normal
0.1
567
Tumor
0.1
478
Normal
0.1
574
Normal
0.1
262
Normal
0.1
914
Normal
0.1
126
Normal
0.1
361
Tumor
0.1
785
Tumor
0.1
433
Tumor
0.1
142
Normal
0.1
526
Normal
0.1
558
Normal
0.1
214
Normal
0.1
755
Tumor
0.1
261
Tumor
0.1
286
Normal
0.1
713
Tumor
0.1
722
Normal
0.1
123
Tumor
0.0
146
Normal
0.0
137
Tumor
0.0
564
Normal
0.0
524
Normal
0.0
513
Tumor
0.0
492
Normal
0.0
187
Tumor
0.0
128
Normal
0.0
883
Tumor
0.0
463
Tumor
0.0
728
Normal
0.0
954
Normal
0.0
738
Normal
0.0
663
Tumor
0.0
434
Normal
0.0
956
Normal
0.0
672
Normal
0.0
1031
Tumor
0.0
384
Normal
0.0
464
Normal
0.0
742
Normal
0.0
393
Tumor
0.0
451
Tumor
0.0
1041
Tumor
0.0
341
Tumor
0.0
357
Tumor
0.0
145
Tumor
0.0
188
Normal
0.0
528
Normal
0.0
423
Tumor
0.0
884
Normal
0.0
916
Normal
0.0
332
Normal
0.0
572
Normal
0.0
498
Normal
0.0
186
Normal
0.0
284
Normal
0.0
862
Normal
0.0
484
Normal
0.0
138
Normal
0.0
921
Tumor
0.0
957
Tumor
0.0
938
Normal
0.0
647
Tumor
0.0
461
Tumor
0.0
185
Tumor
-0.1
351
Tumor
-0.1
636
Normal
-0.1
537
Tumor
-0.1
723
Tumor
-0.1
527
Tumor
-0.1
383
Tumor
-0.1
412
Normal
-0.1
267
Tumor
-0.1
213
Tumor
-0.1
427
Tumor
-0.1
685
Tumor
-0.1
874
Normal
-0.1
364
Normal
-0.1
715
Tumor
-0.1
432
Normal
-0.1
112
Tumor
-0.1
545
Tumor
-0.1
913
Tumor
-0.1
493
Tumor
-0.1
741
Tumor
-0.1
171
Tumor
-0.1
665
Tumor
-0.1
533
Tumor
-0.1
878
Normal
-0.1
468
Normal
-0.1
525
Tumor
-0.1
882
Normal
-0.1
211
Tumor
-0.1
977
Tumor
-0.1
937
Tumor
-0.2
1027
Tumor
-0.2
813
Tumor
-0.2
1042
Normal
-0.2
867
Tumor
-0.2
924
Normal
-0.2
814
Normal
-0.2
131
Tumor
-0.2
113
Tumor
-0.2
367
Tumor
-0.2
228
Normal
-0.2
866
Normal
-0.2
861
Tumor
-0.2
1026
Normal
-0.2
951
Tumor
-0.2
431
Tumor
-0.2
411
Tumor
-0.2
517
Tumor
-0.2
925
Tumor
-0.2
444
Normal
-0.2
546
Normal
-0.3
563
Tumor
-0.3
127
Tumor
-0.3
915
Tumor
-0.3
724
Normal
-0.3
538
Normal
-0.3
1021
Tumor
-0.3
494
Normal
-0.3
964
Normal
-0.3
881
Tumor
-0.3
141
Tumor
-0.3
912
Normal
-0.3
557
Tumor
-0.3
1022
Normal
-0.3
965
Tumor
-0.3
467
Tumor
-0.3
1028
Normal
-0.3
523
Tumor
-0.3
953
Tumor
-0.3
227
Tumor
-0.3
571
Tumor
-0.3
727
Tumor
-0.3
487
Tumor
-0.3
923
Tumor
-0.4
864
Normal
-0.4
695
Tumor
-0.4
483
Tumor
-0.4
968
Normal
-0.4
161
Tumor
-0.4
416
Normal
-0.4
975
Tumor
-0.4
327
Tumor
-0.4
868
Normal
-0.4
944
Normal
-0.4
966
Normal
-0.4
497
Tumor
-0.5
415
Tumor
-0.5
963
Tumor
-0.5
1014
Normal
-0.5
1032
Normal
-0.5
744
Normal
-0.5
976
Normal
-0.5
851
Tumor
-0.5
465
Tumor
-0.5
983
Tumor
-0.5
984
Normal
-0.5
981
Tumor
-0.5
958
Normal
-0.6
978
Normal
-0.6
1016
Normal
-0.6
982
Normal
-0.6
1015
Tumor
-0.6
816
Normal
-0.6
356
Normal
-0.6
285
Tumor
-0.6
355
Tumor
-0.7
823
Tumor
-0.8
873
Tumor
-0.8
328
Normal
-0.8
863
Tumor
-0.8
1013
Tumor
-0.9
865
Tumor
-0.9
824
Normal
-1.0
857
Tumor
-1.1
858
Normal
-1.1
852
Normal
-1.2
818
Normal
-1.2
817
Tumor
-1.4
815
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.