MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.2 nTPM
HPA Brain:5.9 nTPM
GTEx:4.2 nTPM
FANTOM5:9.0 Scaled Tags Per Million
Pig:77.1 nTPM
Mouse:11.8 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 5.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.3
2666 Male, age 74, left hemisphere 6.8
2019 Male, age 18, unknown 5.7
2828 Female, age 72, unknown 5.5
2586 Male, age 75, left hemisphere 4.8
1830 Male, age 51, unknown 4.0
1870 Female, age 42, unknown 4.0
1833 Male, age 53, unknown 3.4
2411 Female, age 72, unknown 3.4
2219 Male, age 76, both hemispheres 3.2
1827 Male, age 72, unknown 2.1
Dorsal raphe nucleus
nTPM: 4.3
2298 Female, age 72, unknown 5.1
1828 Male, age 53, unknown 4.4
2047 Male, age 72, unknown 4.3
2016 Female, age 72, unknown 4.1
2750 Male, age 76, both hemispheres 3.4
Inferior colliculus
nTPM: 5.0
1890 Male, age 53, unknown 11.3
2097 Female, age 72, unknown 4.0
1848 Female, age 42, unknown 2.8
2849 Male, age 72, unknown 2.0
Median raphe nucleus
nTPM: 3.2
2220 Male, age 76, midline 3.2
Periaquaductal grey, anterior
nTPM: 4.5
1947 Male, age 18, unknown 5.3
2502 Female, age 75, unknown 4.8
1795 Male, age 51, unknown 3.4
Periaquaductal grey, dorsal
nTPM: 4.6
1831 Male, age 72, unknown 8.2
2850 Male, age 76, both hemispheres 3.9
2464 Female, age 72, unknown 3.4
1840 Male, age 53, unknown 2.7
Periaquaductal grey, lateral
nTPM: 4.4
2140 Male, age 76, both hemispheres 5.7
2053 Male, age 18, unknown 4.2
2272 Male, age 74, both hemispheres 3.2
Pretectal area
nTPM: 3.7
1817 Female, age 42, unknown 6.0
2667 Female, age 75, unknown 4.9
1944 Female, age 72, unknown 4.6
1815 Male, age 53, unknown 4.4
2316 Male, age 76, right hemisphere 4.4
2007 Male, age 72, unknown 4.0
1816 Male, age 51, unknown 3.7
2825 Male, age 18, unknown 2.8
2224 Female, age 72, unknown 2.6
2273 Male, age 74, both hemispheres 2.0
2407 Male, age 75, both hemispheres 1.7
Red nucleus
nTPM: 5.4
1821 Female, age 72, unknown 7.2
2588 Male, age 74, left hemisphere 7.1
2769 Male, age 72, unknown 6.1
1904 Male, age 53, unknown 6.0
2227 Male, age 72, unknown 5.5
2823 Male, age 76, right hemisphere 5.5
1954 Female, age 42, unknown 5.2
2785 Male, age 18, unknown 5.2
1865 Male, age 51, unknown 5.0
2503 Female, age 72, unknown 4.7
2584 Male, age 75, left hemisphere 4.7
2725 Female, age 75, unknown 2.5
Substantia nigra
nTPM: 4.4
2665 Male, age 74, both hemispheres 7.5
1851 Male, age 51, unknown 6.2
2583 Male, age 75, right hemisphere 4.8
2590 Female, age 75, unknown 4.4
2241 Male, age 72, unknown 4.1
1889 Female, age 72, unknown 4.0
2699 Male, age 18, unknown 3.8
1916 Female, age 42, unknown 3.6
2409 Female, age 72, unknown 3.6
1941 Male, age 53, unknown 2.3
Superior colliculus
nTPM: 4.1
2087 Female, age 72, unknown 6.3
2668 Female, age 75, unknown 5.4
1995 Male, age 72, unknown 5.3
1913 Female, age 42, unknown 3.9
2587 Male, age 74, left hemisphere 3.9
1839 Male, age 51, unknown 3.6
1895 Male, age 76, right hemisphere 3.6
2261 Male, age 18, unknown 3.3
1796 Male, age 53, unknown 3.0
2664 Male, age 75, both hemispheres 2.8
Ventral tegmental area
nTPM: 5.9
1915 Female, age 42, unknown 10.4
2021 Male, age 53, unknown 5.8
1942 Male, age 51, unknown 5.7
2218 Male, age 76, both hemispheres 4.9
2223 Female, age 72, unknown 4.4
2410 Female, age 72, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 4.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.2
Samples: 139

Max nTPM: 15.3
Min nTPM: 0.7
Std nTPM: 2.7
Median nTPM: 3.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 15.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 14.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 13.1
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 11.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 10.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 10.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 9.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 8.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 8.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 8.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 8.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.0
FF:10158-103A5 76 years, female 9.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.6
Samples: 4

Max nTPM: 142.6
Min nTPM: 19.4
Sample A Female 33.7
Sample B Female 142.6
Sample C Male 19.4
Sample D Male 34.6
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 36.2
Min nTPM: 10.4
Sample A Female 36.2
Sample B Female 15.0
Sample C Male 21.3
Sample D Male 10.4
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 8.7
Min nTPM: 8.2
Sample B Female 8.6
Sample C Male 8.7
Sample D Male 8.2
Superior colliculi
nTPM: 77.1
Samples: 4

Max nTPM: 182.0
Min nTPM: 17.0
Sample A Female 90.6
Sample B Female 182.0
Sample C Male 17.0
Sample D Male 18.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.8
Samples: 4

Max nTPM: 13.6
Min nTPM: 10.0
Sample A Male 13.6
Sample B Male 11.9
Sample C Female 11.6
Sample D Female 10.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
76081922 Antisense, RP_060626_01_A02, Mouse strain C57BL/6J (56 days, male) 2.2

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