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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FABP5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
42.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
648.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
566.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
425.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
418.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
386.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
345.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
324.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
272.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
241.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
240.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
225.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
214.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
203.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
195.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
189.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
172.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
172.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
156.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
120.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
119.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
117.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
105.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
101.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
100.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
97.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
95.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
88.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
88.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
81.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
80.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
77.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
77.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
75.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
73.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
72.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
71.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
70.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
67.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
62.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
62.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
61.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
60.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
59.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
59.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
59.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
58.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
58.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
58.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
57.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
56.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
56.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
55.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
54.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
51.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
51.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
50.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
49.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
48.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
46.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
44.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
43.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
42.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
41.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
41.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
41.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
40.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
39.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
39.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
39.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
38.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
38.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
38.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
38.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
38.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
37.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
37.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
37.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
36.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
36.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
35.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
35.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
35.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
34.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
34.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
34.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
34.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
33.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
33.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
32.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
31.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
31.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
31.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
30.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
30.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
29.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
29.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
29.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
29.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
28.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
28.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
28.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
27.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
26.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
26.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
25.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
25.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
24.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
23.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
23.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
22.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
22.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
22.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
22.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
22.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
19.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
18.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
17.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
17.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
17.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
17.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
15.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
15.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
9.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FABP5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
51.3
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
940.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
863.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
514.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
444.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
413.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
406.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
294.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
271.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
237.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
217.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
202.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
196.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
177.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
141.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
136.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
130.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
129.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
128.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
117.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
115.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
107.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
96.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
95.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
94.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
90.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
87.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
86.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
86.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
84.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
84.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
84.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
83.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
82.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
81.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
80.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
79.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
78.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
76.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
74.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
70.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
61.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
60.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
60.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
49.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
48.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
46.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
46.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
46.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
44.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
43.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
41.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
39.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
36.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
32.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
31.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
29.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
27.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
26.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
21.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
21.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
20.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
20.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
2.8
285
Tumor
2.2
363
Tumor
1.9
283
Tumor
1.8
211
Tumor
1.8
537
Tumor
1.8
983
Tumor
1.7
125
Tumor
1.6
567
Tumor
1.5
535
Tumor
1.4
367
Tumor
1.3
523
Tumor
1.3
131
Tumor
1.2
391
Tumor
1.1
525
Tumor
1.1
815
Tumor
1.1
851
Tumor
1.1
965
Tumor
1.1
385
Tumor
1.0
413
Tumor
1.0
697
Tumor
1.0
727
Tumor
1.0
923
Tumor
0.9
817
Tumor
0.9
713
Tumor
0.9
921
Tumor
0.9
223
Tumor
0.8
375
Tumor
0.8
967
Tumor
0.8
813
Tumor
0.7
953
Tumor
0.7
185
Tumor
0.7
387
Tumor
0.7
925
Tumor
0.7
423
Tumor
0.7
1031
Tumor
0.7
943
Tumor
0.7
491
Tumor
0.6
823
Tumor
0.6
724
Normal
0.6
365
Tumor
0.6
545
Tumor
0.6
343
Tumor
0.6
527
Tumor
0.6
455
Tumor
0.5
685
Tumor
0.5
213
Tumor
0.5
411
Tumor
0.5
975
Tumor
0.5
715
Tumor
0.4
141
Tumor
0.4
471
Tumor
0.4
915
Tumor
0.4
861
Tumor
0.4
331
Tumor
0.4
351
Tumor
0.4
743
Tumor
0.3
877
Tumor
0.3
533
Tumor
0.3
313
Tumor
0.3
463
Tumor
0.3
1043
Tumor
0.3
745
Tumor
0.3
517
Tumor
0.3
913
Tumor
0.3
883
Tumor
0.3
492
Normal
0.3
311
Tumor
0.3
461
Tumor
0.3
1027
Tumor
0.3
483
Tumor
0.2
981
Tumor
0.2
538
Normal
0.2
355
Tumor
0.2
513
Tumor
0.2
963
Tumor
0.2
473
Tumor
0.2
951
Tumor
0.2
497
Tumor
0.2
957
Tumor
0.2
1045
Tumor
0.2
145
Tumor
0.2
257
Tumor
0.1
553
Tumor
0.1
147
Tumor
0.1
873
Tumor
0.1
447
Tumor
0.1
493
Tumor
0.1
395
Tumor
0.1
515
Tumor
0.1
1015
Tumor
0.1
327
Tumor
0.1
443
Tumor
0.1
917
Tumor
0.1
1025
Tumor
0.0
297
Tumor
0.0
1021
Tumor
0.0
865
Tumor
0.0
261
Tumor
0.0
966
Normal
0.0
573
Tumor
0.0
755
Tumor
0.0
881
Tumor
0.0
662
Normal
0.0
737
Tumor
0.0
937
Tumor
0.0
536
Normal
-0.1
1041
Tumor
-0.1
434
Normal
-0.1
557
Tumor
-0.1
415
Tumor
-0.1
187
Tumor
-0.1
814
Normal
-0.2
524
Normal
-0.2
271
Tumor
-0.2
421
Tumor
-0.2
217
Tumor
-0.2
227
Tumor
-0.2
857
Tumor
-0.2
433
Tumor
-0.2
1028
Normal
-0.3
267
Tumor
-0.3
171
Tumor
-0.3
977
Tumor
-0.3
161
Tumor
-0.3
467
Tumor
-0.3
477
Tumor
-0.3
364
Normal
-0.3
647
Tumor
-0.3
1013
Tumor
-0.3
498
Normal
-0.3
874
Normal
-0.3
277
Tumor
-0.3
663
Tumor
-0.3
383
Tumor
-0.3
955
Tumor
-0.4
146
Normal
-0.4
427
Tumor
-0.4
516
Normal
-0.4
361
Tumor
-0.4
195
Tumor
-0.4
137
Tumor
-0.4
224
Normal
-0.4
112
Tumor
-0.4
231
Tumor
-0.4
451
Tumor
-0.4
671
Tumor
-0.4
135
Tumor
-0.4
192
Normal
-0.5
268
Normal
-0.5
571
Tumor
-0.5
465
Tumor
-0.5
444
Normal
-0.5
695
Tumor
-0.5
393
Tumor
-0.5
212
Normal
-0.5
487
Tumor
-0.6
982
Normal
-0.6
262
Normal
-0.6
284
Normal
-0.6
123
Tumor
-0.6
777
Tumor
-0.6
188
Normal
-0.6
914
Normal
-0.6
785
Tumor
-0.6
445
Tumor
-0.6
328
Normal
-0.6
362
Normal
-0.7
126
Normal
-0.7
867
Tumor
-0.7
526
Normal
-0.7
911
Tumor
-0.7
984
Normal
-0.7
916
Normal
-0.7
124
Normal
-0.7
478
Normal
-0.7
976
Normal
-0.7
138
Normal
-0.8
412
Normal
-0.8
386
Normal
-0.8
563
Tumor
-0.8
344
Normal
-0.8
341
Tumor
-0.8
635
Tumor
-0.8
721
Tumor
-0.8
665
Tumor
-0.8
142
Normal
-0.8
952
Normal
-0.8
744
Normal
-0.8
113
Tumor
-0.8
214
Normal
-0.9
435
Tumor
-0.9
431
Tumor
-0.9
778
Normal
-0.9
368
Normal
-0.9
554
Normal
-0.9
228
Normal
-0.9
353
Tumor
-0.9
518
Normal
-0.9
357
Tumor
-0.9
968
Normal
-0.9
741
Tumor
-0.9
474
Normal
-0.9
366
Normal
-0.9
568
Normal
-1.0
878
Normal
-1.0
484
Normal
-1.0
488
Normal
-1.0
617
Tumor
-1.0
221
Tumor
-1.0
816
Normal
-1.0
1026
Normal
-1.0
868
Normal
-1.0
468
Normal
-1.0
1016
Normal
-1.0
392
Normal
-1.0
127
Tumor
-1.0
1032
Normal
-1.0
191
Tumor
-1.0
627
Tumor
-1.0
132
Normal
-1.0
922
Normal
-1.0
416
Normal
-1.0
312
Normal
-1.0
1042
Normal
-1.1
286
Normal
-1.1
136
Normal
-1.1
314
Normal
-1.1
534
Normal
-1.1
978
Normal
-1.1
356
Normal
-1.1
852
Normal
-1.1
272
Normal
-1.1
866
Normal
-1.1
114
Normal
-1.1
472
Normal
-1.1
425
Tumor
-1.1
332
Normal
-1.1
448
Normal
-1.1
218
Normal
-1.1
514
Normal
-1.1
546
Normal
-1.1
278
Normal
-1.1
494
Normal
-1.1
924
Normal
-1.1
918
Normal
-1.2
394
Normal
-1.2
528
Normal
-1.2
384
Normal
-1.2
698
Normal
-1.2
1046
Normal
-1.2
686
Normal
-1.2
1014
Normal
-1.2
1022
Normal
-1.2
738
Normal
-1.2
716
Normal
-1.2
818
Normal
-1.3
456
Normal
-1.3
464
Normal
-1.3
648
Normal
-1.3
396
Normal
-1.3
428
Normal
-1.3
574
Normal
-1.3
376
Normal
-1.3
452
Normal
-1.3
964
Normal
-1.3
432
Normal
-1.3
956
Normal
-1.4
954
Normal
-1.4
186
Normal
-1.4
958
Normal
-1.4
666
Normal
-1.4
298
Normal
-1.4
1044
Normal
-1.4
746
Normal
-1.4
111
Normal
-1.5
615
Tumor
-1.5
664
Normal
-1.5
824
Normal
-1.5
388
Normal
-1.5
672
Normal
-1.5
863
Tumor
-1.5
572
Normal
-1.5
446
Normal
-1.5
436
Normal
-1.5
258
Normal
-1.5
424
Normal
-1.5
462
Normal
-1.5
728
Normal
-1.5
696
Normal
-1.6
558
Normal
-1.6
944
Normal
-1.6
422
Normal
-1.6
352
Normal
-1.6
196
Normal
-1.6
481
Tumor
-1.6
466
Normal
-1.7
232
Normal
-1.7
926
Normal
-1.7
742
Normal
-1.7
884
Normal
-1.7
172
Normal
-1.7
564
Normal
-1.7
714
Normal
-1.7
148
Normal
-1.7
482
Normal
-1.7
222
Normal
-1.8
938
Normal
-1.8
858
Normal
-1.8
864
Normal
-1.8
722
Normal
-1.8
641
Tumor
-1.8
414
Normal
-1.8
723
Tumor
-1.9
882
Normal
-1.9
128
Normal
-1.9
426
Normal
-1.9
786
Normal
-1.9
162
Normal
-1.9
636
Normal
-1.9
342
Normal
-1.9
642
Normal
-2.0
756
Normal
-2.0
862
Normal
-2.0
912
Normal
-2.1
354
Normal
-2.2
618
Normal
-2.2
628
Normal
-2.3
358
Normal
-2.3
616
Normal
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
