HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:6.3 nTPM
HPA Brain:18.9 nTPM
GTEx:6.3 nTPM
FANTOM5:17.3 Scaled Tags Per Million
Pig:25.9 nTPM
Mouse:11.2 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024285Antibody HPA024302
Glial cells Not detectedLow
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 18.9
Sample id Sample description nTPM
Hippocampus
nTPM: 15.4
2529 Female, age 94, left hemisphere 18.3
1911 Female, age 85, right hemisphere 17.4
2148 Female, age 91, left hemisphere 17.0
2621 Female, age 67, right hemisphere 16.4
1898 Male, age 80, left hemisphere 12.2
1855 Male, age 76, left hemisphere 11.0
Dentate gyrus
nTPM: 16.7
2531 Female, age 67, both hemispheres 23.2
2246 Female, age 85, both hemispheres 17.4
2528 Male, age 74, both hemispheres 17.0
2530 Female, age 94, left hemisphere 16.6
1927 Female, age 91, both hemispheres 16.5
2010 Male, age 76, both hemispheres 9.8
Entorhinal gyrus
nTPM: 18.9
1938 Female, age 85, left hemisphere 22.4
1787 Male, age 76, left hemisphere 19.3
2117 Female, age 91, right hemisphere 19.0
2764 Male, age 80, right hemisphere 18.1
2686 Male, age 75, right hemisphere 17.7
2613 Female, age 94, left hemisphere 17.1
Hippocampus, CA1
nTPM: 13.9
1873 Female, age 85, both hemispheres 16.5
2082 Female, age 91, right hemisphere 15.3
2527 Male, age 74, both hemispheres 15.0
2045 Male, age 76, both hemispheres 13.9
2749 Male, age 80, left hemisphere 9.0
Hippocampus, CA2
nTPM: 14.7
2113 Female, age 91, right hemisphere 16.8
2437 Female, age 94, left hemisphere 16.4
1940 Female, age 85, left hemisphere 16.0
2249 Male, age 74, both hemispheres 14.2
1963 Male, age 80, left hemisphere 13.5
1892 Male, age 76, both hemispheres 11.5
Hippocampus, CA3
nTPM: 16.0
1891 Female, age 85, both hemispheres 21.6
2620 Female, age 94, left hemisphere 20.9
2861 Female, age 67, both hemispheres 18.8
1867 Male, age 76, both hemispheres 12.8
2436 Male, age 74, both hemispheres 11.5
2137 Male, age 80, left hemisphere 10.7
Parahippocampal cortex
nTPM: 16.0
1990 Female, age 91, right hemisphere 19.3
1850 Male, age 80, both hemispheres 18.5
2532 Female, age 72, left hemisphere 18.4
2692 Male, age 74, both hemispheres 18.2
2245 Female, age 91, both hemispheres 15.3
1933 Female, age 85, both hemispheres 15.1
2693 Female, age 94, both hemispheres 14.6
2622 Female, age 67, right hemisphere 14.5
2250 Female, age 67, right hemisphere 13.4
2018 Male, age 76, both hemispheres 12.1
Perirhinal gyrus
nTPM: 16.6
2848 Male, age 76, right hemisphere 20.4
1841 Female, age 85, right hemisphere 17.6
1794 Male, age 80, right hemisphere 16.6
1847 Female, age 91, left hemisphere 15.6
2521 Female, age 94, right hemisphere 12.9
Subiculum
nTPM: 17.3
2438 Female, age 94, left hemisphere 19.5
1977 Female, age 85, both hemispheres 19.1
1901 Male, age 80, both hemispheres 16.7
2619 Male, age 74, both hemispheres 16.3
2729 Female, age 91, right hemisphere 16.2
2042 Male, age 76, both hemispheres 15.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.3
Samples: 197

Max nTPM: 16.3
Min nTPM: 1.9
Std nTPM: 2.4
Median nTPM: 5.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 16.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 13.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 13.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 12.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 12.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 12.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 12.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 11.6
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 10.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.3
FF:10153-102I9 76 years, female 27.3
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 25.9
Pig sample Sample description nTPM
Subiculum
nTPM: 20.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.0
Sample A Female 24.1
Sample B Female 20.5
Sample C Male 18.0
Sample D Male 20.8
Dorsal hippocampus
nTPM: 25.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.6
Sample A Female 25.6
Sample B Female 26.2
Sample C Male 28.2
Sample D Male 23.6
Entorhinal cortex
nTPM: 15.3
Samples: 4

Max nTPM: 17.6
Min nTPM: 13.7
Sample A Female 15.6
Sample B Female 13.7
Sample C Male 17.6
Sample D Male 14.4
Ventral hippocampus
nTPM: 20.7
Samples: 4

Max nTPM: 25.3
Min nTPM: 16.8
Sample A Female 16.8
Sample B Female 17.8
Sample C Male 22.9
Sample D Male 25.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 11.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.2
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.1
Sample A Male 11.0
Sample B Male 10.5
Sample C Female 10.1
Sample D Female 13.0
Hippocampal formation
nTPM: 8.5
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.9
Sample A Male 6.9
Sample B Male 9.6
Sample C Female 10.2
Sample D Female 7.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
70565599 Antisense, RP_050628_01_C12, Mouse strain C57BL/6J (56 days, male) 1.4

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