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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRA2A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
48.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
44.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
41.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
38.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
30.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
29.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
28.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
28.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
26.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
26.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
25.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
25.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
22.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
22.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
20.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
19.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
17.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
16.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
16.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
16.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
16.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
14.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
14.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
12.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
11.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
10.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRA2A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.7
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
149.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
102.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
101.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
90.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
87.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
81.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
79.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
76.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
75.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
72.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
71.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
71.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
71.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
70.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
67.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
64.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
63.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
62.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
62.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
60.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
60.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
57.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
56.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
55.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
54.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
53.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
53.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
52.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
50.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
49.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
48.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
46.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
46.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
46.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
46.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
45.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
43.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
42.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
41.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
41.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
40.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
40.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
39.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
37.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
36.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
36.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
35.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
34.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
31.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
31.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
30.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
29.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
27.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
26.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
26.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
25.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
25.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
25.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
25.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
23.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
22.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
22.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.1
331
Tumor
1.0
635
Tumor
0.9
785
Tumor
0.8
977
Tumor
0.8
425
Tumor
0.7
665
Tumor
0.7
217
Tumor
0.7
131
Tumor
0.7
313
Tumor
0.7
413
Tumor
0.7
285
Tumor
0.7
211
Tumor
0.6
195
Tumor
0.6
815
Tumor
0.6
951
Tumor
0.6
297
Tumor
0.6
937
Tumor
0.6
881
Tumor
0.6
351
Tumor
0.6
191
Tumor
0.6
443
Tumor
0.5
385
Tumor
0.5
431
Tumor
0.5
755
Tumor
0.5
865
Tumor
0.5
777
Tumor
0.5
213
Tumor
0.5
573
Tumor
0.5
367
Tumor
0.5
743
Tumor
0.5
965
Tumor
0.5
171
Tumor
0.4
685
Tumor
0.4
497
Tumor
0.4
1021
Tumor
0.4
814
Normal
0.4
724
Normal
0.4
387
Tumor
0.4
671
Tumor
0.4
137
Tumor
0.4
383
Tumor
0.4
411
Tumor
0.4
277
Tumor
0.4
813
Tumor
0.4
487
Tumor
0.4
867
Tumor
0.3
1015
Tumor
0.3
355
Tumor
0.3
953
Tumor
0.3
517
Tumor
0.3
515
Tumor
0.3
423
Tumor
0.3
523
Tumor
0.3
873
Tumor
0.3
391
Tumor
0.3
727
Tumor
0.3
861
Tumor
0.3
451
Tumor
0.3
461
Tumor
0.3
123
Tumor
0.3
185
Tumor
0.3
627
Tumor
0.3
147
Tumor
0.3
341
Tumor
0.3
187
Tumor
0.3
444
Normal
0.3
737
Tumor
0.3
357
Tumor
0.3
218
Normal
0.3
141
Tumor
0.3
136
Normal
0.3
135
Tumor
0.3
455
Tumor
0.3
433
Tumor
0.3
427
Tumor
0.3
445
Tumor
0.3
967
Tumor
0.3
513
Tumor
0.3
477
Tumor
0.3
192
Normal
0.3
913
Tumor
0.3
527
Tumor
0.3
463
Tumor
0.2
353
Tumor
0.2
146
Normal
0.2
1031
Tumor
0.2
851
Tumor
0.2
283
Tumor
0.2
145
Tumor
0.2
113
Tumor
0.2
545
Tumor
0.2
138
Normal
0.2
883
Tumor
0.2
911
Tumor
0.2
975
Tumor
0.2
647
Tumor
0.2
161
Tumor
0.2
745
Tumor
0.2
142
Normal
0.2
447
Tumor
0.2
662
Normal
0.2
127
Tumor
0.2
473
Tumor
0.2
925
Tumor
0.2
615
Tumor
0.2
365
Tumor
0.2
125
Tumor
0.2
483
Tumor
0.2
567
Tumor
0.2
467
Tumor
0.2
1013
Tumor
0.2
221
Tumor
0.2
222
Normal
0.1
1045
Tumor
0.1
823
Tumor
0.1
343
Tumor
0.1
132
Normal
0.1
227
Tumor
0.1
957
Tumor
0.1
491
Tumor
0.1
311
Tumor
0.1
493
Tumor
0.1
446
Normal
0.1
375
Tumor
0.1
267
Tumor
0.1
955
Tumor
0.1
943
Tumor
0.1
571
Tumor
0.1
223
Tumor
0.1
666
Normal
0.1
471
Tumor
0.1
817
Tumor
0.1
271
Tumor
0.1
697
Tumor
0.1
563
Tumor
0.1
196
Normal
0.1
231
Tumor
0.1
434
Normal
0.1
312
Normal
0.1
715
Tumor
0.1
537
Tumor
0.1
214
Normal
0.1
983
Tumor
0.1
963
Tumor
0.1
432
Normal
0.1
672
Normal
0.1
327
Tumor
0.1
663
Tumor
0.1
1025
Tumor
0.1
857
Tumor
0.1
557
Tumor
0.1
978
Normal
0.1
344
Normal
0.1
393
Tumor
0.1
982
Normal
0.1
756
Normal
0.0
111
Normal
0.0
863
Tumor
0.0
395
Tumor
0.0
695
Tumor
0.0
877
Tumor
0.0
664
Normal
0.0
261
Tumor
0.0
112
Tumor
0.0
741
Tumor
0.0
124
Normal
0.0
363
Tumor
0.0
533
Tumor
0.0
1041
Tumor
0.0
268
Normal
0.0
358
Normal
0.0
648
Normal
0.0
1027
Tumor
0.0
981
Tumor
0.0
628
Normal
0.0
415
Tumor
0.0
574
Normal
0.0
278
Normal
0.0
421
Tumor
0.0
436
Normal
0.0
224
Normal
0.0
114
Normal
0.0
352
Normal
0.0
721
Tumor
0.0
361
Tumor
0.0
212
Normal
0.0
572
Normal
0.0
384
Normal
0.0
686
Normal
0.0
878
Normal
0.0
1043
Tumor
0.0
342
Normal
0.0
465
Tumor
0.0
915
Tumor
0.0
786
Normal
0.0
162
Normal
0.0
778
Normal
0.0
516
Normal
0.0
966
Normal
0.0
1028
Normal
0.0
525
Tumor
0.0
818
Normal
0.0
882
Normal
0.0
488
Normal
0.0
286
Normal
0.0
944
Normal
0.0
257
Tumor
0.0
481
Tumor
0.0
188
Normal
0.0
424
Normal
0.0
354
Normal
-0.1
472
Normal
-0.1
414
Normal
-0.1
558
Normal
-0.1
923
Tumor
-0.1
262
Normal
-0.1
228
Normal
-0.1
976
Normal
-0.1
422
Normal
-0.1
524
Normal
-0.1
366
Normal
-0.1
478
Normal
-0.1
272
Normal
-0.1
172
Normal
-0.1
546
Normal
-0.1
564
Normal
-0.1
426
Normal
-0.1
874
Normal
-0.1
484
Normal
-0.1
816
Normal
-0.1
1014
Normal
-0.1
526
Normal
-0.1
568
Normal
-0.1
912
Normal
-0.1
938
Normal
-0.1
538
Normal
-0.1
258
Normal
-0.1
428
Normal
-0.1
386
Normal
-0.1
492
Normal
-0.1
852
Normal
-0.1
298
Normal
-0.1
1026
Normal
-0.1
744
Normal
-0.1
332
Normal
-0.1
456
Normal
-0.1
1032
Normal
-0.1
314
Normal
-0.1
284
Normal
-0.1
917
Tumor
-0.1
984
Normal
-0.1
824
Normal
-0.1
618
Normal
-0.1
884
Normal
-0.1
616
Normal
-0.1
466
Normal
-0.1
858
Normal
-0.1
435
Tumor
-0.1
482
Normal
-0.1
1044
Normal
-0.1
126
Normal
-0.1
362
Normal
-0.1
376
Normal
-0.1
536
Normal
-0.1
498
Normal
-0.1
866
Normal
-0.1
535
Tumor
-0.1
746
Normal
-0.1
148
Normal
-0.1
553
Tumor
-0.1
728
Normal
-0.1
641
Tumor
-0.2
464
Normal
-0.2
722
Normal
-0.2
518
Normal
-0.2
412
Normal
-0.2
921
Tumor
-0.2
713
Tumor
-0.2
396
Normal
-0.2
964
Normal
-0.2
742
Normal
-0.2
696
Normal
-0.2
862
Normal
-0.2
1042
Normal
-0.2
958
Normal
-0.2
738
Normal
-0.2
956
Normal
-0.2
954
Normal
-0.2
714
Normal
-0.2
924
Normal
-0.2
922
Normal
-0.2
474
Normal
-0.2
534
Normal
-0.2
636
Normal
-0.2
1022
Normal
-0.2
328
Normal
-0.2
448
Normal
-0.2
1016
Normal
-0.2
186
Normal
-0.2
128
Normal
-0.2
528
Normal
-0.2
864
Normal
-0.2
617
Tumor
-0.2
698
Normal
-0.2
368
Normal
-0.2
916
Normal
-0.2
914
Normal
-0.2
868
Normal
-0.2
952
Normal
-0.2
494
Normal
-0.3
514
Normal
-0.3
468
Normal
-0.3
926
Normal
-0.3
968
Normal
-0.3
716
Normal
-0.3
452
Normal
-0.3
462
Normal
-0.3
723
Tumor
-0.3
392
Normal
-0.3
918
Normal
-0.3
1046
Normal
-0.3
394
Normal
-0.3
232
Normal
-0.3
356
Normal
-0.3
554
Normal
-0.3
388
Normal
-0.3
364
Normal
-0.3
416
Normal
-0.3
642
Normal
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
