MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.8 nTPM
HPA Brain:9.2 nTPM
GTEx:5.8 nTPM
FANTOM5:11.0 Scaled Tags Per Million
Pig:16.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 9.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.7
2219 Male, age 76, both hemispheres 9.6
1827 Male, age 72, unknown 7.3
1833 Male, age 53, unknown 7.0
2411 Female, age 72, unknown 6.6
1870 Female, age 42, unknown 6.5
1830 Male, age 51, unknown 6.4
2828 Female, age 72, unknown 6.3
2019 Male, age 18, unknown 6.1
2666 Male, age 74, left hemisphere 5.9
2586 Male, age 75, left hemisphere 5.3
Dorsal raphe nucleus
nTPM: 7.4
2047 Male, age 72, unknown 8.3
1828 Male, age 53, unknown 8.2
2016 Female, age 72, unknown 6.9
2750 Male, age 76, both hemispheres 6.9
2298 Female, age 72, unknown 6.7
Inferior colliculus
nTPM: 9.2
2097 Female, age 72, unknown 9.8
1890 Male, age 53, unknown 9.6
1848 Female, age 42, unknown 9.2
2849 Male, age 72, unknown 8.0
Median raphe nucleus
nTPM: 7.4
2220 Male, age 76, midline 7.4
Periaquaductal grey, anterior
nTPM: 7.8
1947 Male, age 18, unknown 8.4
2502 Female, age 75, unknown 8.3
1795 Male, age 51, unknown 6.7
Periaquaductal grey, dorsal
nTPM: 8.2
1840 Male, age 53, unknown 9.2
2850 Male, age 76, both hemispheres 8.5
2464 Female, age 72, unknown 8.0
1831 Male, age 72, unknown 7.2
Periaquaductal grey, lateral
nTPM: 7.2
2140 Male, age 76, both hemispheres 7.5
2272 Male, age 74, both hemispheres 7.1
2053 Male, age 18, unknown 7.0
Pretectal area
nTPM: 7.5
1944 Female, age 72, unknown 8.3
1816 Male, age 51, unknown 8.2
1817 Female, age 42, unknown 7.6
2007 Male, age 72, unknown 7.6
2224 Female, age 72, unknown 7.6
2407 Male, age 75, both hemispheres 7.4
1815 Male, age 53, unknown 7.3
2273 Male, age 74, both hemispheres 7.3
2667 Female, age 75, unknown 7.3
2825 Male, age 18, unknown 7.0
2316 Male, age 76, right hemisphere 6.6
Red nucleus
nTPM: 6.7
1821 Female, age 72, unknown 7.9
2503 Female, age 72, unknown 7.8
2823 Male, age 76, right hemisphere 7.4
1865 Male, age 51, unknown 7.3
1954 Female, age 42, unknown 7.2
2227 Male, age 72, unknown 7.0
2769 Male, age 72, unknown 6.7
1904 Male, age 53, unknown 6.3
2725 Female, age 75, unknown 6.1
2584 Male, age 75, left hemisphere 6.0
2785 Male, age 18, unknown 6.0
2588 Male, age 74, left hemisphere 5.3
Substantia nigra
nTPM: 8.1
2241 Male, age 72, unknown 9.5
2409 Female, age 72, unknown 9.3
2699 Male, age 18, unknown 9.2
1916 Female, age 42, unknown 8.9
2665 Male, age 74, both hemispheres 8.6
1941 Male, age 53, unknown 8.0
1851 Male, age 51, unknown 7.8
1889 Female, age 72, unknown 7.4
2583 Male, age 75, right hemisphere 6.9
2590 Female, age 75, unknown 5.9
Superior colliculus
nTPM: 7.2
2668 Female, age 75, unknown 10.3
1895 Male, age 76, right hemisphere 8.0
2261 Male, age 18, unknown 7.6
1839 Male, age 51, unknown 7.2
2087 Female, age 72, unknown 7.1
1796 Male, age 53, unknown 6.7
2587 Male, age 74, left hemisphere 6.5
2664 Male, age 75, both hemispheres 6.5
1913 Female, age 42, unknown 6.1
1995 Male, age 72, unknown 5.9
Ventral tegmental area
nTPM: 7.5
2218 Male, age 76, both hemispheres 9.0
1915 Female, age 42, unknown 8.0
2410 Female, age 72, unknown 7.7
1942 Male, age 51, unknown 7.6
2223 Female, age 72, unknown 6.5
2021 Male, age 53, unknown 6.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.8
Samples: 139

Max nTPM: 18.4
Min nTPM: 2.1
Std nTPM: 2.1
Median nTPM: 5.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 18.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 11.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 10.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 10.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 9.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 9.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 9.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 9.2
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 9.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 9.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 11.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.0
FF:10158-103A5 76 years, female 11.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.9
Samples: 4

Max nTPM: 16.0
Min nTPM: 12.5
Sample A Female 13.0
Sample B Female 14.1
Sample C Male 12.5
Sample D Male 16.0
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.8
Sample A Female 17.0
Sample B Female 16.1
Sample C Male 18.3
Sample D Male 14.8
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 16.7
Min nTPM: 11.6
Sample B Female 16.7
Sample C Male 15.5
Sample D Male 11.6
Superior colliculi
nTPM: 16.9
Samples: 4

Max nTPM: 21.2
Min nTPM: 12.5
Sample A Female 17.0
Sample B Female 12.5
Sample C Male 21.2
Sample D Male 17.0

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