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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
64
Samples
Sample
Description
TPM
TCGA-KN-8427-01A
0 years, male, white, stage:Stage IV, alive, 30 days
5.3
TCGA-KO-8404-01A
0 years, male, white, stage:Stage IV, dead, 325 days
2.3
TCGA-KO-8403-01A
0 years, male, white, stage:Stage I, alive, 3208 days
2.2
TCGA-KO-8405-01A
0 years, male, white, stage:Stage III, alive, 3056 days
1.8
TCGA-KL-8333-01A
0 years, male, white, stage:Stage II, alive, 2991 days
1.7
TCGA-KL-8335-01A
0 years, male, white, stage:Stage III, alive, 2815 days
1.5
TCGA-KN-8423-01A
0 years, male, white, stage:Stage I, alive, 788 days
1.3
TCGA-KN-8433-01A
0 years, female, white, stage:Stage III, alive, 341 days
1.1
TCGA-KL-8329-01A
0 years, female, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-KL-8345-01A
0 years, male, white, stage:Stage III, alive, 1665 days
1.0
TCGA-KL-8343-01A
0 years, male, white, stage:Stage III, dead, 2172 days
0.9
TCGA-KL-8344-01A
0 years, male, white, stage:Stage III, alive, 876 days
0.8
TCGA-KN-8425-01A
0 years, male, white, stage:Stage I, alive, 3179 days
0.7
TCGA-KN-8429-01A
0 years, female, white, stage:Stage III, alive, 2650 days
0.6
TCGA-KO-8406-01A
0 years, female, white, stage:Stage I, alive, 3145 days
0.6
TCGA-KM-8442-01A
0 years, male, stage:Stage II, alive, 1437 days
0.5
TCGA-KO-8413-01A
0 years, male, white, stage:Stage I, alive, 3038 days
0.5
TCGA-KO-8415-01A
0 years, female, white, stage:Stage I, alive, 2939 days
0.5
TCGA-KM-8441-01A
0 years, female, white, stage:Stage I, alive, 876 days
0.5
TCGA-KO-8410-01A
0 years, female, white, stage:Stage I, alive, 3136 days
0.4
TCGA-KN-8435-01A
0 years, male, white, stage:Stage II, alive, 3498 days
0.4
TCGA-KO-8408-01A
0 years, male, white, stage:Stage III, dead, 507 days
0.4
TCGA-KO-8407-01A
0 years, male, white, stage:Stage II, alive, 2820 days
0.4
TCGA-KM-8639-01A
0 years, male, white, stage:Stage I, alive, 953 days
0.3
TCGA-KM-8477-01A
0 years, male, white, stage:Stage I, alive, 1553 days
0.2
TCGA-KL-8334-01A
0 years, female, white, stage:Stage III, alive, 2949 days
0.2
TCGA-KL-8342-01A
0 years, female, white, stage:Stage II, alive, 2248 days
0.2
TCGA-KM-8439-01A
0 years, male, white, stage:Stage I, alive, 708 days
0.2
TCGA-KL-8324-01A
0 years, female, white, stage:Stage II, alive, 4676 days
0.2
TCGA-KM-8438-01A
0 years, female, white, stage:Stage II, alive, 4622 days
0.2
TCGA-KO-8416-01A
0 years, male, white, stage:Stage III, alive, 2752 days
0.1
TCGA-KM-8476-01A
0 years, male, white, stage:Stage I, alive, 3745 days
0.1
TCGA-KN-8421-01A
0 years, female, white, stage:Stage II, alive, 2674 days
0.1
TCGA-KL-8330-01A
0 years, female, black or african american, stage:Stage II, alive, 3304 days
0.1
TCGA-KN-8418-01A
0 years, female, white, stage:Stage II, alive, 3935 days
0.1
TCGA-KL-8341-01A
0 years, male, asian, stage:Stage IV, dead, 754 days
0.1
TCGA-KL-8325-01A
0 years, female, white, stage:Stage II, dead, 725 days
0.1
TCGA-KL-8332-01A
0 years, male, white, stage:Stage I, alive, 2582 days
0.1
TCGA-KO-8417-01A
0 years, female, white, stage:Stage I, alive, 2815 days
0.1
TCGA-KL-8339-01A
0 years, male, white, stage:Stage IV, dead, 855 days
0.1
TCGA-KL-8337-01A
0 years, male, black or african american, stage:Stage II, alive, 1364 days
0.1
TCGA-KO-8414-01A
0 years, female, white, stage:Stage II, alive, 3212 days
0.1
TCGA-KN-8431-01A
0 years, female, stage:Stage II, alive, 588 days
0.1
TCGA-KL-8340-01A
0 years, male, white, stage:Stage II, alive, 2024 days
0.1
TCGA-KL-8328-01A
0 years, male, white, stage:Stage II, alive, 3127 days
0.1
TCGA-KN-8437-01A
0 years, female, white, stage:Stage I, alive, 3068 days
0.1
TCGA-KL-8346-01A
0 years, male, white, stage:Stage II, alive, 1897 days
0.1
TCGA-KM-8443-01A
0 years, male, white, stage:Stage II, alive, 1520 days
0.0
TCGA-KL-8327-01A
0 years, female, white, stage:Stage I, alive, 4169 days
0.0
TCGA-KO-8411-01A
0 years, male, white, stage:Stage I, alive, 3958 days
0.0
TCGA-KN-8432-01A
0 years, female, white, stage:Stage II, alive, 76 days
0.0
TCGA-KL-8338-01A
0 years, male, white, stage:Stage III, alive, 2633 days
0.0
TCGA-KN-8426-01A
0 years, male, white, stage:Stage IV, alive, 108 days
0.0
TCGA-KL-8326-01A
0 years, male, white, stage:Stage III, alive, 3322 days
0.0
TCGA-KM-8440-01A
0 years, male, black or african american, stage:Stage III, alive, 1366 days
0.0
TCGA-KN-8434-01A
0 years, female, white, stage:Stage II, alive, 1797 days
0.0
TCGA-KN-8419-01A
0 years, male, black or african american, stage:Stage II, alive, 714 days
0.0
TCGA-KN-8428-01A
0 years, male, white, stage:Stage II, dead, 1590 days
0.0
TCGA-KN-8424-01A
0 years, female, white, stage:Stage I, alive, 1983 days
0.0
TCGA-KL-8336-01A
0 years, female, white, stage:Stage IV, dead, 920 days
0.0
TCGA-KL-8331-01A
0 years, female, white, stage:Stage II, alive, 3010 days
0.0
TCGA-KL-8323-01A
0 years, female, white, stage:Stage III, dead, 1158 days
0.0
TCGA-KN-8436-01A
0 years, male, white, stage:Stage II, alive, 1288 days
0.0
TCGA-KO-8409-01A
0 years, male, white, stage:Stage II, alive, 3180 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM200A is potential prognostic, high expression is favorable in Kidney Renal Clear Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.0
Number of samples
521
Samples
Sample
Description
TPM
TCGA-B4-5832-01A
0 years, male, white, stage:Stage III, alive, 155 days
107.3
TCGA-BP-4340-01A
0 years, female, white, stage:Stage I, dead, 562 days
94.2
TCGA-B8-5159-01A
0 years, female, white, stage:Stage I, alive, 722 days
73.1
TCGA-B4-5838-01A
0 years, male, white, stage:'--, alive, 166 days
63.4
TCGA-A3-3373-01A
0 years, female, white, stage:Stage I, alive, 1621 days
62.5
TCGA-B8-5164-01A
0 years, male, white, stage:Stage III, alive, 26 days
60.1
TCGA-CW-6088-01A
0 years, male, white, stage:Stage I, alive, 3222 days
57.8
TCGA-CZ-5986-01A
0 years, male, white, stage:Stage I, alive, 373 days
54.8
TCGA-B0-5705-01A
0 years, female, white, stage:Stage I, alive, 4537 days
54.8
TCGA-BP-4343-01A
0 years, male, white, stage:Stage III, dead, 1912 days
50.8
TCGA-B0-4846-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
50.4
TCGA-A3-3331-01A
0 years, female, white, stage:Stage I, alive, 1257 days
48.2
TCGA-BP-4790-01A
0 years, male, white, stage:Stage I, dead, 1111 days
48.1
TCGA-CJ-5681-01A
0 years, female, white, stage:Stage IV, dead, 552 days
47.2
TCGA-CJ-4644-01A
0 years, female, white, stage:Stage IV, dead, 336 days
47.0
TCGA-B0-4688-01A
0 years, male, white, stage:Stage IV, dead, 101 days
46.6
TCGA-B0-5699-01A
0 years, male, white, stage:Stage I, alive, 3841 days
46.1
TCGA-CJ-4639-01A
0 years, female, white, stage:Stage II, alive, 3229 days
45.8
TCGA-BP-4976-01A
0 years, male, white, stage:Stage I, alive, 1632 days
45.6
TCGA-CJ-4904-01A
0 years, female, white, stage:Stage IV, alive, 3302 days
45.0
TCGA-BP-5186-01A
0 years, female, white, stage:Stage I, alive, 693 days
44.9
TCGA-BP-4775-01A
0 years, female, white, stage:Stage I, alive, 1843 days
44.8
TCGA-B0-5713-01A
0 years, female, white, stage:Stage III, alive, 2782 days
44.5
TCGA-BP-4164-01A
0 years, female, white, stage:Stage III, dead, 992 days
44.0
TCGA-B0-5709-01A
0 years, female, white, stage:Stage III, alive, 3974 days
44.0
TCGA-CZ-4860-01A
0 years, male, white, stage:Stage IV, dead, 206 days
43.6
TCGA-CW-5583-01A
0 years, female, white, stage:Stage I, alive, 2489 days
43.6
TCGA-B4-5844-01A
0 years, female, white, stage:Stage II, alive, 7 days
43.5
TCGA-CJ-4874-01A
0 years, female, white, stage:Stage I, alive, 2283 days
43.5
TCGA-CW-5587-01A
0 years, female, white, stage:Stage III, alive, 2226 days
43.0
TCGA-CJ-4885-01A
0 years, male, white, stage:Stage IV, alive, 3451 days
42.9
TCGA-CW-5581-01A
0 years, male, white, stage:Stage I, alive, 2799 days
42.6
TCGA-EU-5906-01A
0 years, male, white, stage:Stage I, alive, 206 days
42.5
TCGA-BP-4163-01A
0 years, female, white, stage:Stage III, alive, 2839 days
42.0
TCGA-A3-3359-01A
0 years, female, white, stage:Stage I, alive, 2504 days
41.7
TCGA-A3-3307-01A
0 years, male, stage:Stage III, alive, 1436 days
41.7
TCGA-B4-5836-01A
0 years, female, white, stage:Stage I, alive, 141 days
41.7
TCGA-B0-5110-01A
0 years, female, white, stage:Stage I, alive, 2009 days
41.6
TCGA-BP-4766-01A
0 years, female, white, stage:Stage I, alive, 1462 days
41.4
TCGA-BP-5200-01A
0 years, male, white, stage:Stage II, alive, 1063 days
41.4
TCGA-AK-3450-01A
0 years, female, white, stage:Stage I, alive, 1508 days
41.2
TCGA-BP-4975-01A
0 years, male, white, stage:Stage I, alive, 1433 days
41.0
TCGA-B8-4151-01A
0 years, female, white, stage:Stage III, alive, 1299 days
40.9
TCGA-A3-3363-01A
0 years, male, asian, stage:Stage II, alive, 319 days
40.8
TCGA-CW-5591-01A
0 years, male, white, stage:Stage IV, alive, 2271 days
40.7
TCGA-B8-5549-01A
0 years, male, white, stage:Stage I, alive, 194 days
40.4
TCGA-B4-5377-01A
0 years, female, white, stage:Stage IV, alive, 365 days
40.4
TCGA-BP-5004-01A
0 years, male, white, stage:Stage I, alive, 1126 days
39.9
TCGA-CZ-4857-01A
0 years, male, white, stage:Stage IV, dead, 1432 days
39.7
TCGA-BP-4807-01A
0 years, male, white, stage:Stage I, alive, 211 days
39.2
TCGA-BP-4338-01A
0 years, male, white, stage:Stage I, alive, 2859 days
39.1
TCGA-CZ-4863-01A
0 years, female, white, stage:Stage III, alive, 1928 days
39.0
TCGA-B0-5693-01A
0 years, female, white, stage:Stage I, alive, 4074 days
39.0
TCGA-B0-5094-01A
0 years, male, white, stage:Stage IV, dead, 333 days
38.3
TCGA-CZ-4862-01A
0 years, male, white, stage:Stage I, alive, 3271 days
38.2
TCGA-BP-4762-01A
0 years, male, white, stage:Stage I, dead, 1343 days
38.1
TCGA-CZ-5455-01A
0 years, male, white, stage:Stage IV, dead, 561 days
37.7
TCGA-A3-3362-01A
0 years, female, white, stage:Stage I, alive, 1559 days
37.5
TCGA-B0-5695-01A
0 years, female, white, stage:Stage I, alive, 2150 days
37.3
TCGA-BP-4160-01A
0 years, male, white, stage:Stage III, alive, 2881 days
37.3
TCGA-B2-A4SR-01A
0 years, male, black or african american, stage:Stage II, alive, 507 days
37.1
TCGA-B0-5696-01A
0 years, male, white, stage:Stage III, alive, 2609 days
37.1
TCGA-A3-3357-01A
0 years, male, white, stage:Stage II, alive, 2688 days
36.9
TCGA-B0-5099-01A
0 years, female, white, stage:Stage III, dead, 485 days
36.8
TCGA-CJ-4886-01A
0 years, female, white, stage:Stage I, alive, 1952 days
36.7
TCGA-CJ-4894-01A
0 years, male, white, stage:Stage III, dead, 841 days
36.5
TCGA-BP-4174-01A
0 years, male, white, stage:Stage II, alive, 1879 days
36.4
TCGA-A3-3370-01A
0 years, female, white, stage:Stage I, alive, 2274 days
36.3
TCGA-B2-5639-01A
0 years, male, white, stage:Stage IV, dead, 1003 days
36.2
TCGA-BP-4763-01A
0 years, female, white, stage:Stage I, dead, 1270 days
36.1
TCGA-A3-3385-01A
0 years, female, white, stage:Stage I, alive, 1993 days
36.0
TCGA-CJ-4641-01A
0 years, female, white, stage:Stage IV, dead, 1661 days
35.5
TCGA-B8-5545-01A
0 years, male, black or african american, stage:Stage I, alive, 1525 days
35.1
TCGA-EU-5905-01A
0 years, female, white, stage:Stage I, alive, 119 days
34.9
TCGA-B0-5691-01A
0 years, female, white, stage:Stage I, alive, 3431 days
34.8
TCGA-B0-5113-01A
0 years, female, white, stage:Stage III, alive, 1175 days
34.8
TCGA-BP-4965-01A
0 years, male, white, stage:Stage I, alive, 1871 days
34.7
TCGA-BP-4162-01A
0 years, female, white, stage:Stage I, alive, 3074 days
34.7
TCGA-B0-5711-01A
0 years, male, white, stage:Stage III, alive, 3989 days
34.7
TCGA-B8-5163-01A
0 years, female, white, stage:Stage III, alive, 822 days
34.6
TCGA-A3-A6NN-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
34.6
TCGA-BP-4982-01A
0 years, male, white, stage:Stage I, alive, 1014 days
34.1
TCGA-CZ-4864-01A
0 years, male, white, stage:Stage II, dead, 1315 days
33.9
TCGA-CZ-5457-01A
0 years, male, white, stage:Stage III, alive, 2754 days
33.5
TCGA-A3-3365-01A
0 years, male, white, stage:Stage I, alive, 873 days
33.4
TCGA-B8-5550-01A
0 years, male, white, stage:Stage III, alive, 1476 days
33.4
TCGA-B0-5707-01A
0 years, female, white, stage:Stage I, alive, 3744 days
33.3
TCGA-CZ-4859-01A
0 years, female, white, stage:Stage I, alive, 1787 days
33.2
TCGA-CJ-4634-01A
0 years, female, white, stage:Stage I, alive, 3498 days
33.1
TCGA-B8-A54H-01A
0 years, female, black or african american, stage:Stage II, alive, 256 days
33.0
TCGA-B0-4852-01A
0 years, female, white, stage:Stage II, dead, 1121 days
33.0
TCGA-BP-4170-01A
0 years, female, white, stage:Stage I, dead, 2343 days
32.9
TCGA-BP-4972-01A
0 years, female, white, stage:Stage III, alive, 1502 days
32.8
TCGA-CZ-4865-01A
0 years, female, white, stage:Stage I, dead, 166 days
32.7
TCGA-EU-5904-01A
0 years, female, white, stage:Stage I, alive, 551 days
32.7
TCGA-B0-4710-01A
0 years, female, white, stage:Stage III, alive, 1755 days
32.7
TCGA-CJ-4897-01A
0 years, female, white, stage:Stage III, alive, 3341 days
32.7
TCGA-B8-5158-01A
0 years, male, white, stage:Stage III, alive, 1218 days
32.4
TCGA-B0-5712-01A
0 years, female, black or african american, stage:Stage IV, alive, 2722 days
32.2
TCGA-CJ-4907-01A
0 years, male, white, stage:Stage III, alive, 1499 days
32.2
TCGA-BP-5202-01A
0 years, male, white, stage:Stage III, alive, 29 days
32.1
TCGA-CZ-5461-01A
0 years, male, white, stage:Stage IV, dead, 330 days
32.1
TCGA-DV-5569-01A
0 years, female, white, stage:Stage I, alive, 355 days
32.0
TCGA-CZ-5988-01A
0 years, male, white, stage:Stage I, alive, 693 days
31.9
TCGA-BP-4330-01A
0 years, female, black or african american, stage:Stage III, alive, 1888 days
31.8
TCGA-BP-4970-01A
0 years, male, asian, stage:Stage III, alive, 433 days
31.7
TCGA-A3-A8OV-01A
0 years, male, black or african american, stage:Stage I, alive, 340 days
31.6
TCGA-DV-5566-01A
0 years, female, white, stage:Stage I, alive, 1398 days
31.6
TCGA-AK-3455-01A
0 years, female, white, stage:Stage III, dead, 683 days
31.5
TCGA-CZ-5463-01A
0 years, male, white, stage:Stage II, alive, 662 days
31.5
TCGA-CJ-4905-01A
0 years, female, white, stage:Stage I, alive, 1496 days
31.5
TCGA-B0-4827-01A
0 years, female, white, stage:Stage III, dead, 885 days
31.4
TCGA-BP-5194-01A
0 years, male, white, stage:Stage I, alive, 408 days
31.4
TCGA-A3-3308-01A
0 years, female, white, stage:Stage III, alive, 16 days
31.3
TCGA-EU-5907-01A
0 years, male, white, stage:Stage III, alive, 127 days
31.2
TCGA-B4-5843-01A
0 years, male, white, stage:Stage I, alive, 11 days
30.8
TCGA-BP-5006-01A
0 years, male, white, stage:Stage I, alive, 840 days
30.8
TCGA-B0-5095-01A
0 years, male, white, stage:Stage III, dead, 245 days
30.8
TCGA-BP-4964-01A
0 years, female, white, stage:Stage I, alive, 1862 days
30.7
TCGA-CJ-6028-01A
0 years, male, white, stage:Stage IV, dead, 1625 days
30.6
TCGA-CZ-4856-01A
0 years, female, white, stage:Stage I, alive, 18 days
30.6
TCGA-A3-3376-01A
0 years, male, black or african american, stage:Stage I, dead, 1696 days
30.6
TCGA-BP-5182-01A
0 years, male, white, stage:Stage I, alive, 1165 days
30.6
TCGA-GK-A6C7-01A
0 years, female, black or african american, stage:Stage I, alive, 61 days
30.6
TCGA-CW-6093-01A
0 years, male, white, stage:Stage I, alive, 3146 days
30.5
TCGA-CZ-5982-01A
0 years, female, white, stage:Stage I, alive, 2439 days
30.4
TCGA-BP-4787-01A
0 years, female, white, stage:Stage IV, dead, 480 days
30.3
TCGA-BP-4768-01A
0 years, female, white, stage:Stage I, alive, 400 days
30.3
TCGA-A3-3352-01A
0 years, male, white, stage:Stage III, dead, 561 days
30.3
TCGA-BP-4765-01A
0 years, male, white, stage:Stage I, alive, 2184 days
30.2
TCGA-B2-4102-01A
0 years, male, white, stage:Stage I, alive, 952 days
30.2
TCGA-B0-5692-01A
0 years, female, white, stage:Stage III, alive, 3944 days
30.2
TCGA-CZ-4866-01A
0 years, female, white, stage:Stage I, alive, 3267 days
30.2
TCGA-A3-3329-01A
0 years, male, white, stage:Stage I, alive, 1624 days
30.0
TCGA-CJ-5680-01A
0 years, female, white, stage:Stage IV, dead, 768 days
30.0
TCGA-B2-4099-01A
0 years, male, white, stage:Stage I, alive, 972 days
30.0
TCGA-B8-5553-01A
0 years, female, white, stage:Stage I, alive, 435 days
29.9
TCGA-B8-4154-01A
0 years, female, white, stage:Stage I, alive, 1380 days
29.8
TCGA-B0-5812-01A
0 years, male, white, stage:Stage I, alive, 3834 days
29.8
TCGA-B2-5635-01A
0 years, male, white, stage:Stage I, alive, 755 days
29.5
TCGA-A3-3320-01A
0 years, female, white, stage:Stage I, alive, 1508 days
29.5
TCGA-CZ-5451-01A
0 years, male, white, stage:Stage II, alive, 1929 days
29.4
TCGA-B0-5075-01A
0 years, female, white, stage:Stage III, dead, 637 days
29.3
TCGA-CJ-5686-01A
0 years, female, white, stage:Stage I, alive, 2038 days
29.3
TCGA-CW-5580-01A
0 years, female, white, stage:Stage IV, dead, 1964 days
29.2
TCGA-B0-5697-01A
0 years, male, white, stage:Stage I, alive, 2630 days
29.2
TCGA-CJ-6030-01A
0 years, male, white, stage:Stage I, dead, 2299 days
28.9
TCGA-B0-4838-01A
0 years, female, white, stage:Stage I, dead, 834 days
28.8
TCGA-BP-4756-01A
0 years, female, asian, stage:Stage I, alive, 374 days
28.7
TCGA-A3-3367-01A
0 years, male, white, stage:Stage I, alive, 2270 days
28.7
TCGA-CJ-6032-01A
0 years, female, white, stage:Stage II, alive, 3639 days
28.7
TCGA-CZ-5462-01A
0 years, male, white, stage:Stage IV, dead, 311 days
28.6
TCGA-CZ-5984-01A
0 years, male, white, stage:Stage I, alive, 2067 days
28.5
TCGA-CJ-5682-01A
0 years, male, white, stage:Stage IV, alive, 3736 days
28.5
TCGA-A3-3378-01A
0 years, male, white, stage:Stage I, alive, 630 days
28.5
TCGA-BP-5176-01A
0 years, female, white, stage:Stage I, dead, 1590 days
28.4
TCGA-B0-4945-01A
0 years, female, white, stage:Stage I, dead, 2145 days
28.2
TCGA-CJ-4903-01A
0 years, male, white, stage:Stage I, alive, 1560 days
28.1
TCGA-B0-5077-01A
0 years, male, white, stage:Stage I, dead, 1317 days
28.0
TCGA-BP-5189-01A
0 years, male, white, stage:Stage I, dead, 822 days
28.0
TCGA-CW-5589-01A
0 years, male, white, stage:Stage I, alive, 2378 days
28.0
TCGA-B2-3924-01A
0 years, male, white, stage:Stage I, alive, 1092 days
27.9
TCGA-A3-3311-01A
0 years, male, stage:Stage I, dead, 1191 days
27.8
TCGA-BP-4961-01A
0 years, male, white, stage:Stage I, alive, 1935 days
27.6
TCGA-BP-4789-01A
0 years, male, white, stage:Stage I, alive, 1489 days
27.6
TCGA-CJ-4643-01A
0 years, female, white, stage:Stage II, alive, 1793 days
27.5
TCGA-AS-3778-01A
0 years, male, white, stage:Stage I, alive, 43 days
27.5
TCGA-BP-5184-01A
0 years, male, white, stage:Stage I, alive, 1133 days
27.4
TCGA-AK-3456-01A
0 years, male, black or african american, stage:Stage II, alive, 1143 days
27.4
TCGA-BP-5192-01A
0 years, male, white, stage:Stage I, alive, 714 days
27.4
TCGA-CW-5588-01A
0 years, female, white, stage:Stage I, alive, 2017 days
27.4
TCGA-A3-3349-01A
0 years, female, white, stage:Stage I, alive, 1385 days
27.2
TCGA-B8-5165-01A
0 years, male, white, stage:Stage I, alive, 737 days
27.2
TCGA-AK-3428-01A
0 years, male, white, stage:Stage III, alive, 3728 days
27.2
TCGA-A3-3372-01A
0 years, male, white, stage:Stage III, alive, 735 days
26.9
TCGA-B8-4621-01A
0 years, male, black or african american, stage:Stage I, alive, 788 days
26.5
TCGA-A3-3322-01A
0 years, male, white, stage:Stage I, alive, 1478 days
26.5
TCGA-BP-5168-01A
0 years, male, white, stage:Stage I, dead, 1463 days
26.2
TCGA-B0-4814-01A
0 years, male, white, stage:Stage IV, dead, 168 days
26.2
TCGA-B8-4622-01A
0 years, male, white, stage:Stage IV, alive, 1525 days
26.2
TCGA-CJ-4871-01A
0 years, male, white, stage:Stage IV, alive, 2423 days
26.2
TCGA-BP-4983-01A
0 years, female, asian, stage:Stage III, alive, 1413 days
26.2
TCGA-A3-3317-01A
0 years, male, stage:Stage II, alive, 1491 days
26.2
TCGA-BP-4325-01A
0 years, female, white, stage:Stage I, alive, 2964 days
26.0
TCGA-BP-4161-01A
0 years, male, white, stage:Stage I, alive, 2746 days
26.0
TCGA-B4-5834-01A
0 years, male, white, stage:Stage I, alive, 38 days
25.9
TCGA-DV-A4W0-01A
0 years, male, black or african american, stage:Stage I, alive, 2470 days
25.9
TCGA-BP-4995-01A
0 years, male, white, stage:Stage I, alive, 1371 days
25.6
TCGA-BP-4801-01A
0 years, male, white, stage:Stage I, alive, 1124 days
25.6
TCGA-A3-3343-01A
0 years, male, white, stage:Stage II, alive, 945 days
25.5
TCGA-B0-5399-01A
0 years, male, white, stage:Stage I, alive, 1411 days
25.4
TCGA-B0-4693-01A
0 years, female, white, stage:Stage III, dead, 77 days
25.3
TCGA-BP-4977-01A
0 years, male, white, stage:Stage I, alive, 454 days
25.3
TCGA-CZ-5985-01A
0 years, male, white, stage:Stage II, alive, 1997 days
25.2
TCGA-B0-4823-01A
0 years, male, white, stage:Stage I, dead, 454 days
25.0
TCGA-A3-3325-01A
0 years, male, white, stage:Stage I, dead, 1170 days
24.6
TCGA-CZ-5464-01A
0 years, male, white, stage:Stage IV, alive, 2128 days
24.5
TCGA-CZ-5458-01A
0 years, male, white, stage:Stage III, alive, 2789 days
24.4
TCGA-BP-5183-01A
0 years, male, white, stage:Stage III, alive, 1291 days
24.3
TCGA-B0-5119-01A
0 years, female, white, stage:Stage I, alive, 1552 days
24.1
TCGA-CZ-5465-01A
0 years, female, stage:Stage III, dead, 2564 days
24.1
TCGA-B0-5701-01A
0 years, male, white, stage:Stage III, alive, 2461 days
23.9
TCGA-CZ-4853-01A
0 years, male, white, stage:Stage I, alive, 774 days
23.8
TCGA-B8-A7U6-01A
0 years, female, black or african american, stage:Stage I, alive, 495 days
23.8
TCGA-BP-4166-01A
0 years, male, white, stage:Stage III, alive, 13 days
23.7
TCGA-B2-4101-01A
0 years, male, white, stage:Stage II, alive, 648 days
23.7
TCGA-B0-5703-01A
0 years, male, white, stage:Stage I, alive, 2246 days
23.7
TCGA-BP-4998-01A
0 years, male, asian, stage:Stage I, alive, 932 days
23.7
TCGA-B0-4848-01A
0 years, male, white, stage:Stage III, dead, 883 days
23.7
TCGA-CW-5585-01A
0 years, male, white, stage:Stage IV, alive, 2609 days
23.7
TCGA-B2-5633-01A
0 years, male, white, stage:Stage I, alive, 963 days
23.6
TCGA-BP-4346-01A
0 years, male, white, stage:Stage III, dead, 1493 days
23.5
TCGA-A3-3358-01A
0 years, female, white, stage:Stage I, alive, 1307 days
23.5
TCGA-CJ-4889-01A
0 years, female, white, stage:Stage I, alive, 1946 days
23.3
TCGA-CJ-5684-01A
0 years, male, white, stage:Stage III, alive, 2231 days
23.2
TCGA-BP-4774-01A
0 years, female, white, stage:Stage I, alive, 1885 days
23.2
TCGA-B0-4816-01A
0 years, male, white, stage:Stage II, dead, 1371 days
23.1
TCGA-BP-4329-01A
0 years, male, white, stage:Stage III, dead, 845 days
23.0
TCGA-CZ-5453-01A
0 years, male, white, stage:Stage II, dead, 2419 days
22.9
TCGA-CJ-4884-01A
0 years, female, white, stage:Stage III, alive, 1759 days
22.9
TCGA-BP-5174-01A
0 years, female, white, stage:Stage I, alive, 2257 days
22.8
TCGA-BP-4782-01A
0 years, female, white, stage:Stage I, alive, 354 days
22.8
TCGA-BP-4967-01A
0 years, male, white, stage:Stage III, alive, 205 days
22.8
TCGA-B0-4818-01A
0 years, female, white, stage:Stage II, dead, 510 days
22.7
TCGA-BP-4803-01A
0 years, male, white, stage:Stage III, alive, 204 days
22.7
TCGA-A3-A6NJ-01A
0 years, female, black or african american, stage:Stage I, alive, 468 days
22.7
TCGA-A3-3351-01A
0 years, male, white, stage:Stage II, alive, 910 days
22.7
TCGA-A3-3326-01A
0 years, male, white, stage:Stage I, alive, 1137 days
22.6
TCGA-CJ-4876-01A
0 years, male, white, stage:Stage II, alive, 1955 days
22.5
TCGA-BP-4991-01A
0 years, male, white, stage:Stage I, alive, 1413 days
22.4
TCGA-CW-6097-01A
0 years, male, white, stage:Stage III, dead, 571 days
22.4
TCGA-B8-4148-01A
0 years, female, white, stage:Stage I, alive, 1520 days
22.0
TCGA-CZ-5456-01A
0 years, male, white, stage:Stage II, alive, 2422 days
22.0
TCGA-BP-5187-01A
0 years, male, white, stage:Stage I, alive, 406 days
21.9
TCGA-BP-4347-01A
0 years, male, white, stage:Stage III, alive, 1367 days
21.9
TCGA-A3-A8OW-01A
0 years, male, black or african american, stage:Stage III, alive, 323 days
21.5
TCGA-CW-5590-01A
0 years, male, white, stage:Stage IV, dead, 1075 days
21.5
TCGA-CJ-4908-01A
0 years, male, white, stage:Stage I, alive, 1531 days
21.5
TCGA-A3-A8CQ-01A
0 years, female, black or african american, stage:Stage I, alive, 3 days
21.4
TCGA-A3-A6NL-01A
0 years, female, black or african american, stage:Stage I, alive, 689 days
21.3
TCGA-BP-5198-01A
0 years, male, white, stage:Stage III, alive, 603 days
21.3
TCGA-BP-4973-01A
0 years, male, white, stage:Stage III, alive, 1384 days
21.2
TCGA-CJ-4918-01A
0 years, male, white, stage:Stage IV, dead, 93 days
21.1
TCGA-CZ-5467-01A
0 years, female, white, stage:Stage III, dead, 73 days
20.9
TCGA-CJ-4893-01A
0 years, female, white, stage:Stage I, alive, 750 days
20.8
TCGA-B0-5080-01A
0 years, male, white, stage:Stage IV, dead, 342 days
20.8
TCGA-BP-4986-01A
0 years, male, white, stage:Stage I, alive, 785 days
20.7
TCGA-A3-3382-01A
0 years, male, white, stage:Stage I, alive, 574 days
20.7
TCGA-A3-3323-01A
0 years, male, white, stage:Stage I, alive, 1106 days
20.6
TCGA-CJ-4899-01A
0 years, male, asian, stage:Stage I, alive, 1528 days
20.6
TCGA-CJ-4870-01A
0 years, female, black or african american, stage:Stage III, alive, 1498 days
20.5
TCGA-B0-5098-01A
0 years, female, black or african american, stage:Stage I, dead, 1584 days
20.4
TCGA-BP-5173-01A
0 years, male, white, stage:Stage I, dead, 62 days
20.4
TCGA-CJ-5683-01A
0 years, male, white, stage:Stage I, alive, 1889 days
20.2
TCGA-A3-3306-01A
0 years, male, white, stage:Stage I, alive, 1120 days
19.9
TCGA-BP-4795-01A
0 years, female, white, stage:Stage I, alive, 620 days
19.9
TCGA-BP-5195-01A
0 years, male, white, stage:Stage I, alive, 749 days
19.8
TCGA-BP-4781-01A
0 years, male, white, stage:Stage I, alive, 2080 days
19.7
TCGA-BP-4332-01A
0 years, male, white, stage:Stage III, alive, 1133 days
19.6
TCGA-B0-5097-01A
0 years, female, white, stage:Stage III, alive, 665 days
19.5
TCGA-B0-4845-01A
0 years, male, white, stage:Stage IV, dead, 1986 days
19.5
TCGA-CJ-5677-01A
0 years, female, white, stage:Stage IV, dead, 782 days
19.4
TCGA-BP-4353-01A
0 years, male, white, stage:Stage I, dead, 375 days
19.4
TCGA-B0-5710-01A
0 years, male, white, stage:Stage I, alive, 2430 days
19.4
TCGA-BP-4345-01A
0 years, male, white, stage:Stage III, alive, 1516 days
19.4
TCGA-B8-A54J-01A
0 years, male, black or african american, stage:Stage II, alive, 528 days
19.4
TCGA-CJ-4892-01A
0 years, female, white, stage:Stage I, alive, 1521 days
19.3
TCGA-AK-3445-01A
0 years, male, white, stage:Stage III, alive, 2392 days
19.1
TCGA-B8-A54E-01A
0 years, female, black or african american, stage:Stage I, alive, 909 days
18.7
TCGA-B0-4701-01A
0 years, female, white, stage:Stage IV, dead, 238 days
18.4
TCGA-A3-3324-01A
0 years, male, white, stage:Stage I, alive, 1186 days
18.4
TCGA-CJ-4920-01A
0 years, female, white, stage:Stage I, dead, 139 days
18.3
TCGA-CZ-5459-01A
0 years, male, white, stage:Stage III, alive, 1683 days
18.3
TCGA-A3-3347-01A
0 years, female, white, stage:Stage III, dead, 1610 days
18.2
TCGA-CZ-5470-01A
0 years, female, stage:Stage II, alive, 386 days
18.2
TCGA-B0-4703-01A
0 years, male, white, stage:Stage IV, dead, 182 days
18.1
TCGA-BP-4797-01A
0 years, male, white, stage:Stage III, alive, 1107 days
18.1
TCGA-B2-5641-01A
0 years, male, white, stage:Stage I, alive, 656 days
18.1
TCGA-DV-A4VX-01A
0 years, male, black or african american, stage:Stage IV, dead, 1626 days
18.1
TCGA-CZ-4854-01A
0 years, male, white, stage:Stage I, dead, 1404 days
18.0
TCGA-BP-5181-01A
0 years, female, white, stage:Stage I, alive, 1495 days
17.9
TCGA-BP-4158-01A
0 years, male, white, stage:Stage I, alive, 3377 days
17.8
TCGA-AK-3429-01A
0 years, female, white, stage:Stage II, alive, 3328 days
17.7
TCGA-AK-3460-01A
0 years, male, white, stage:Stage I, alive, 2508 days
17.6
TCGA-B0-5698-01A
0 years, male, black or african american, stage:Stage I, alive, 3631 days
17.6
TCGA-BP-4349-01A
0 years, female, white, stage:Stage I, alive, 372 days
17.4
TCGA-BP-5177-01A
0 years, female, white, stage:Stage I, alive, 293 days
17.4
TCGA-B0-5690-01A
0 years, female, white, stage:Stage I, alive, 3392 days
17.3
TCGA-B0-5700-01A
0 years, male, white, stage:Stage I, alive, 1790 days
17.3
TCGA-BP-4173-01A
0 years, male, white, stage:Stage II, alive, 1893 days
17.1
TCGA-CJ-4869-01A
0 years, male, white, stage:Stage III, alive, 2554 days
17.0
TCGA-B0-4824-01A
0 years, female, white, stage:Stage I, dead, 1657 days
16.9
TCGA-BP-4959-01A
0 years, male, white, stage:Stage I, alive, 2660 days
16.8
TCGA-A3-A6NI-01A
0 years, male, black or african american, stage:Stage I, alive, 1018 days
16.6
TCGA-BP-5201-01A
0 years, male, white, stage:Stage IV, alive, 951 days
16.6
TCGA-B0-4817-01A
0 years, male, white, stage:Stage III, dead, 1019 days
16.5
TCGA-CW-5584-01A
0 years, male, white, stage:Stage III, dead, 164 days
16.5
TCGA-BP-4176-01A
0 years, male, white, stage:Stage I, alive, 1955 days
16.4
TCGA-B0-4700-01A
0 years, male, white, stage:Stage IV, dead, 1980 days
16.3
TCGA-B8-A54D-01A
0 years, male, black or african american, stage:Stage III, alive, 830 days
16.3
TCGA-CJ-5678-01A
0 years, male, black or african american, stage:Stage IV, dead, 574 days
16.3
TCGA-CJ-4888-01A
0 years, male, white, stage:Stage IV, dead, 1567 days
16.2
TCGA-B0-4712-01A
0 years, male, white, stage:Stage IV, dead, 1337 days
16.1
TCGA-A3-3387-01A
0 years, male, white, stage:Stage I, alive, 617 days
16.0
TCGA-CZ-5454-01A
0 years, male, white, stage:Stage IV, dead, 722 days
16.0
TCGA-CJ-6031-01A
0 years, male, white, stage:Stage I, alive, 1906 days
16.0
TCGA-CJ-4872-01A
0 years, male, white, stage:Stage I, alive, 1435 days
16.0
TCGA-CZ-5466-01A
0 years, male, stage:Stage III, alive, 685 days
15.8
TCGA-DV-5575-01A
0 years, female, white, stage:Stage I, alive, 1729 days
15.8
TCGA-B0-4694-01A
0 years, male, white, stage:Stage III, dead, 106 days
15.7
TCGA-BP-4994-01A
0 years, male, white, stage:Stage I, alive, 1308 days
15.6
TCGA-AK-3461-01A
0 years, male, white, stage:Stage I, alive, 2217 days
15.5
TCGA-BP-5008-01A
0 years, male, white, stage:Stage I, alive, 1071 days
15.5
TCGA-A3-3319-01A
0 years, male, white, stage:Stage I, alive, 1130 days
15.5
TCGA-CZ-4858-01A
0 years, male, white, stage:Stage II, dead, 2105 days
15.4
TCGA-B8-A54F-01A
0 years, female, black or african american, stage:Stage I, alive, 519 days
15.3
TCGA-BP-4165-01A
0 years, female, white, stage:Stage I, alive, 3037 days
15.3
TCGA-B0-4690-01A
0 years, male, white, stage:Stage IV, dead, 43 days
15.2
TCGA-CJ-5679-01A
0 years, male, white, stage:Stage III, dead, 679 days
15.2
TCGA-CJ-5671-01A
0 years, male, white, stage:Stage I, alive, 3987 days
15.2
TCGA-BP-4985-01A
0 years, male, white, stage:Stage III, dead, 952 days
14.9
TCGA-B2-4098-01A
0 years, female, black or african american, stage:Stage I, dead, 51 days
14.8
TCGA-BP-4341-01A
0 years, male, white, stage:Stage III, dead, 1589 days
14.7
TCGA-B0-5108-01A
0 years, male, white, stage:Stage III, alive, 1782 days
14.7
TCGA-BP-4963-01A
0 years, male, white, stage:Stage I, alive, 1834 days
14.7
TCGA-B8-A8YJ-01A
0 years, female, black or african american, stage:Stage I, alive, 431 days
14.5
TCGA-BP-4987-01A
0 years, female, asian, stage:Stage I, alive, 1124 days
14.5
TCGA-BP-5007-01A
0 years, male, white, stage:Stage II, alive, 1140 days
14.4
TCGA-A3-3380-01A
0 years, male, stage:Stage I, alive, 567 days
14.4
TCGA-B4-5835-01A
0 years, female, white, stage:Stage I, alive, 16 days
14.4
TCGA-BP-4968-01A
0 years, male, white, stage:Stage I, alive, 1746 days
14.3
TCGA-3Z-A93Z-01A
0 years, male, black or african american, stage:Stage I, alive, 385 days
14.2
TCGA-AK-3425-01A
0 years, male, white, stage:Stage I, alive, 3343 days
14.2
TCGA-BP-4974-01A
0 years, male, white, stage:Stage IV, dead, 211 days
14.2
TCGA-B0-4833-01A
0 years, female, white, stage:Stage I, dead, 2386 days
13.9
TCGA-BP-4962-01A
0 years, male, white, stage:Stage II, alive, 1785 days
13.9
TCGA-A3-3335-01A
0 years, male, white, stage:Stage II, alive, 1886 days
13.8
TCGA-B0-4828-01A
0 years, male, white, stage:Stage IV, dead, 307 days
13.7
TCGA-CJ-4916-01A
0 years, female, white, stage:Stage III, alive, 1373 days
13.5
TCGA-BP-4337-01A
0 years, female, white, stage:Stage III, dead, 2 days
13.5
TCGA-6D-AA2E-01A
0 years, female, black or african american, stage:Stage I, alive, 362 days
13.3
TCGA-DV-5568-01A
0 years, male, white, stage:Stage I, alive, 370 days
13.2
TCGA-B8-5546-01A
0 years, female, black or african american, stage:Stage I, alive, 505 days
13.1
TCGA-BP-4351-01A
0 years, female, white, stage:Stage III, alive, 970 days
13.1
TCGA-BP-5196-01A
0 years, male, white, stage:Stage I, alive, 1018 days
13.0
TCGA-CJ-4868-01A
0 years, male, white, stage:Stage IV, dead, 646 days
13.0
TCGA-AK-3431-01A
0 years, female, white, stage:Stage II, dead, 2241 days
12.9
TCGA-BP-4770-01A
0 years, female, white, stage:Stage IV, dead, 329 days
12.8
TCGA-AK-3451-01A
0 years, male, white, stage:Stage II, alive, 2868 days
12.8
TCGA-CJ-4890-01A
0 years, male, white, stage:Stage IV, alive, 3519 days
12.7
TCGA-MW-A4EC-01A
0 years, female, black or african american, stage:Stage I, alive, 498 days
12.7
TCGA-CZ-5468-01A
0 years, male, white, stage:Stage IV, dead, 59 days
12.7
TCGA-CJ-5675-01A
0 years, male, white, stage:Stage II, alive, 3936 days
12.7
TCGA-A3-3316-01A
0 years, male, white, stage:Stage II, alive, 1493 days
12.6
TCGA-B0-5116-01A
0 years, male, white, stage:Stage III, alive, 1274 days
12.5
TCGA-CJ-4895-01A
0 years, male, white, stage:Stage IV, dead, 1200 days
12.4
TCGA-CJ-4878-01A
0 years, female, white, stage:Stage III, alive, 2186 days
12.4
TCGA-BP-5190-01A
0 years, male, white, stage:Stage I, alive, 1011 days
12.3
TCGA-B0-5694-01A
0 years, male, white, stage:Stage III, dead, 480 days
12.3
TCGA-B0-4691-01A
0 years, male, white, stage:Stage IV, dead, 139 days
12.3
TCGA-BP-4971-01A
0 years, male, white, stage:Stage III, alive, 1487 days
12.3
TCGA-B0-5102-01A
0 years, female, white, stage:Stage I, dead, 2764 days
12.3
TCGA-A3-3383-01A
0 years, male, white, stage:Stage I, alive, 861 days
12.3
TCGA-BP-4331-01A
0 years, male, white, stage:Stage I, dead, 2454 days
12.2
TCGA-CZ-5452-01A
0 years, male, white, stage:Stage II, alive, 1789 days
12.2
TCGA-CJ-4902-01A
0 years, male, white, stage:Stage III, alive, 1520 days
12.2
TCGA-BP-4344-01A
0 years, female, white, stage:Stage I, alive, 1666 days
12.2
TCGA-B0-4713-01A
0 years, female, white, stage:Stage III, dead, 202 days
12.0
TCGA-B0-5106-01A
0 years, male, white, stage:Stage I, dead, 1598 days
12.0
TCGA-CZ-4861-01A
0 years, male, white, stage:Stage II, dead, 446 days
12.0
TCGA-CJ-4636-01A
0 years, male, white, stage:Stage III, alive, 1924 days
11.9
TCGA-BP-5180-01A
0 years, male, white, stage:Stage I, alive, 2263 days
11.8
TCGA-B0-5400-01A
0 years, female, white, stage:Stage III, alive, 1733 days
11.7
TCGA-BP-4342-01A
0 years, male, white, stage:Stage II, dead, 2256 days
11.7
TCGA-BP-4169-01A
0 years, female, white, stage:Stage II, dead, 701 days
11.7
TCGA-BP-4804-01A
0 years, male, white, stage:Stage I, alive, 1459 days
11.6
TCGA-B0-5120-01A
0 years, female, white, stage:Stage I, alive, 1169 days
11.6
TCGA-BP-5001-01A
0 years, female, white, stage:Stage I, alive, 1177 days
11.5
TCGA-A3-3313-01A
0 years, male, black or african american, stage:Stage I, dead, 735 days
11.3
TCGA-BP-4969-01A
0 years, female, white, stage:Stage I, alive, 1794 days
11.3
TCGA-B8-4620-01A
0 years, female, white, stage:Stage III, alive, 777 days
11.2
TCGA-CZ-5987-01A
0 years, male, white, stage:Stage IV, dead, 445 days
10.9
TCGA-B0-4836-01A
0 years, male, white, stage:Stage IV, dead, 1238 days
10.8
TCGA-BP-4355-01A
0 years, female, white, stage:Stage III, dead, 953 days
10.7
TCGA-CJ-5676-01A
0 years, male, white, stage:Stage III, alive, 4067 days
10.7
TCGA-B0-4718-01A
0 years, male, white, stage:Stage III, alive, 1778 days
10.7
TCGA-DV-5573-01A
0 years, male, white, stage:Stage I, alive, 1130 days
10.7
TCGA-BP-4784-01A
0 years, female, white, stage:Stage I, alive, 1854 days
10.6
TCGA-BP-4993-01A
0 years, male, white, stage:Stage I, alive, 177 days
10.6
TCGA-G6-A8L8-01A
0 years, female, black or african american, stage:Stage I, dead, 1091 days
10.5
TCGA-MM-A563-01A
0 years, male, black or african american, stage:'--, alive, 591 days
10.4
TCGA-BP-4798-01A
0 years, male, white, stage:'--, dead, 334 days
10.4
TCGA-B0-5088-01A
0 years, male, white, stage:Stage I, dead, 563 days
10.3
TCGA-B0-4815-01A
0 years, male, white, stage:Stage III, dead, 1588 days
10.1
TCGA-BP-4771-01A
0 years, male, white, stage:Stage IV, dead, 162 days
10.1
TCGA-BP-4777-01A
0 years, male, white, stage:Stage I, alive, 1731 days
10.0
TCGA-CJ-5672-01A
0 years, male, white, stage:Stage I, dead, 1972 days
9.9
TCGA-CZ-5469-01A
0 years, male, white, stage:Stage II, dead, 946 days
9.9
TCGA-CJ-6027-01A
0 years, male, white, stage:Stage I, dead, 3615 days
9.9
TCGA-BP-4335-01A
0 years, female, white, stage:Stage IV, dead, 475 days
9.8
TCGA-AK-3458-01A
0 years, male, white, stage:Stage I, alive, 1168 days
9.8
TCGA-B0-5402-01A
0 years, male, white, stage:Stage IV, alive, 1290 days
9.7
TCGA-BP-4327-01A
0 years, female, white, stage:Stage II, dead, 109 days
9.6
TCGA-B0-4699-01A
0 years, male, white, stage:Stage IV, dead, 110 days
9.5
TCGA-B0-5081-01A
0 years, female, white, stage:Stage III, dead, 362 days
9.3
TCGA-BP-5010-01A
0 years, male, white, stage:Stage III, dead, 878 days
9.3
TCGA-CJ-4881-01A
0 years, male, white, stage:Stage III, alive, 2014 days
9.3
TCGA-B0-4849-01A
0 years, male, white, stage:Stage III, dead, 69 days
9.3
TCGA-DV-5574-01A
0 years, male, white, stage:Stage I, alive, 2016 days
9.2
TCGA-B0-5092-01A
0 years, female, white, stage:Stage IV, dead, 459 days
9.2
TCGA-CJ-4637-01A
0 years, female, white, stage:Stage IV, dead, 2227 days
9.2
TCGA-BP-4159-01A
0 years, male, white, stage:Stage I, dead, 2601 days
9.1
TCGA-BP-5199-01A
0 years, male, white, stage:Stage II, alive, 1355 days
9.1
TCGA-CZ-5989-01A
0 years, male, white, stage:Stage II, alive, 1905 days
9.0
TCGA-CJ-6033-01A
0 years, female, white, stage:Stage IV, dead, 224 days
9.0
TCGA-CJ-4882-01A
0 years, male, black or african american, stage:Stage III, alive, 1883 days
9.0
TCGA-B0-4698-01A
0 years, male, white, stage:Stage IV, dead, 42 days
8.8
TCGA-BP-4167-01A
0 years, male, white, stage:Stage III, alive, 2718 days
8.8
TCGA-BP-4326-01A
0 years, female, white, stage:Stage I, dead, 1625 days
8.7
TCGA-BP-5178-01A
0 years, male, white, stage:Stage IV, dead, 1912 days
8.7
TCGA-BP-4776-01A
0 years, male, white, stage:Stage I, alive, 411 days
8.7
TCGA-B0-4810-01A
0 years, male, white, stage:Stage III, dead, 478 days
8.6
TCGA-B0-4843-01A
0 years, male, white, stage:Stage III, dead, 320 days
8.5
TCGA-B0-4837-01A
0 years, male, white, stage:Stage I, dead, 1378 days
8.5
TCGA-AK-3436-01A
0 years, male, white, stage:Stage IV, alive, 3331 days
8.4
TCGA-BP-5009-01A
0 years, male, white, stage:Stage I, dead, 1092 days
8.4
TCGA-BP-4989-01A
0 years, male, white, stage:Stage III, alive, 118 days
8.3
TCGA-AK-3434-01A
0 years, male, white, stage:Stage I, alive, 2087 days
8.2
TCGA-B0-4844-01A
0 years, male, white, stage:Stage IV, dead, 313 days
8.2
TCGA-CZ-5460-01A
0 years, male, white, stage:Stage IV, alive, 2873 days
8.0
TCGA-CJ-4635-01A
0 years, male, white, stage:Stage I, alive, 1416 days
8.0
TCGA-BP-4769-01A
0 years, male, white, stage:Stage I, alive, 1876 days
8.0
TCGA-BP-4758-01A
0 years, male, white, stage:Stage I, alive, 2208 days
7.8
TCGA-MM-A84U-01A
0 years, female, black or african american, stage:Stage I, alive, 700 days
7.8
TCGA-BP-5000-01A
0 years, male, white, stage:Stage I, alive, 563 days
7.8
TCGA-BP-4760-01A
0 years, male, black or african american, stage:Stage I, alive, 2361 days
7.5
TCGA-B0-4696-01A
0 years, male, white, stage:Stage III, dead, 866 days
7.5
TCGA-BP-4759-01A
0 years, male, white, stage:Stage I, alive, 2372 days
7.2
TCGA-CJ-4912-01A
0 years, male, white, stage:Stage II, alive, 1657 days
7.0
TCGA-B0-5121-01A
0 years, male, white, stage:Stage I, alive, 1485 days
7.0
TCGA-B0-4811-01A
0 years, male, white, stage:Stage III, dead, 1417 days
6.9
TCGA-B0-4714-01A
0 years, male, white, stage:Stage IV, dead, 99 days
6.9
TCGA-CJ-4901-01A
0 years, male, white, stage:Stage III, alive, 1450 days
6.8
TCGA-B2-5636-01A
0 years, male, white, stage:Stage I, alive, 919 days
6.6
TCGA-CJ-4638-01A
0 years, female, white, stage:Stage IV, dead, 431 days
6.6
TCGA-CJ-4900-01A
0 years, female, white, stage:Stage IV, dead, 1714 days
6.6
TCGA-B0-4819-01A
0 years, female, white, stage:Stage IV, dead, 183 days
6.4
TCGA-B0-4706-01A
0 years, male, white, stage:Stage III, dead, 65 days
6.4
TCGA-BP-4960-01A
0 years, male, white, stage:Stage II, alive, 2172 days
6.1
TCGA-B0-4839-01A
0 years, female, white, stage:Stage I, dead, 1639 days
6.1
TCGA-CJ-4875-01A
0 years, male, white, stage:Stage IV, dead, 3554 days
6.0
TCGA-B0-4842-01A
0 years, female, white, stage:Stage III, dead, 1724 days
5.9
TCGA-CJ-4887-01A
0 years, male, white, stage:Stage IV, dead, 932 days
5.9
TCGA-B0-4707-01A
0 years, male, white, stage:Stage III, dead, 600 days
5.9
TCGA-BP-4799-01A
0 years, male, white, stage:Stage III, dead, 1133 days
5.8
TCGA-B8-5162-01A
0 years, male, white, stage:Stage II, alive, 36 days
5.7
TCGA-B8-5551-01A
0 years, female, black or african american, stage:Stage I, alive, 16 days
5.7
TCGA-BP-4981-01A
0 years, female, white, stage:Stage III, dead, 1097 days
5.7
TCGA-MM-A564-01A
0 years, male, black or african american, stage:Stage II, alive, 607 days
5.6
TCGA-BP-4999-01A
0 years, male, white, stage:Stage I, alive, 1266 days
5.5
TCGA-CW-6087-01A
0 years, male, white, stage:Stage IV, dead, 41 days
5.5
TCGA-B0-4847-01A
0 years, male, white, stage:Stage IV, dead, 793 days
5.3
TCGA-B0-5706-01A
0 years, male, white, stage:Stage II, alive, 3205 days
5.2
TCGA-B0-5085-01A
0 years, female, white, stage:Stage III, dead, 770 days
5.1
TCGA-B0-5083-01A
0 years, male, white, stage:Stage I, dead, 1045 days
5.1
TCGA-AK-3453-01A
0 years, female, white, stage:Stage II, alive, 2531 days
5.0
TCGA-B8-A54I-01A
0 years, male, black or african american, stage:Stage I, alive, 150 days
5.0
TCGA-B0-5096-01A
0 years, female, white, stage:Stage III, dead, 68 days
4.9
TCGA-BP-5175-01A
0 years, male, white, stage:Stage I, alive, 932 days
4.8
TCGA-B8-4143-01A
0 years, female, white, stage:Stage IV, dead, 709 days
4.6
TCGA-CJ-4873-01A
0 years, female, white, stage:Stage III, alive, 1776 days
4.6
TCGA-DV-5565-01A
0 years, male, white, stage:Stage I, alive, 1329 days
4.6
TCGA-B0-4822-01A
0 years, male, white, stage:Stage II, dead, 1111 days
4.5
TCGA-BP-4177-01A
0 years, male, white, stage:Stage I, alive, 1670 days
4.5
TCGA-B0-5100-01A
0 years, male, black or african american, stage:Stage III, dead, 1913 days
4.5
TCGA-AK-3454-01A
0 years, male, white, stage:Stage I, alive, 874 days
4.4
TCGA-B0-4813-01A
0 years, male, white, stage:Stage III, dead, 18 days
4.1
TCGA-G6-A8L6-01A
0 years, male, black or african american, stage:Stage IV, dead, 313 days
4.0
TCGA-BP-5170-01A
0 years, male, white, stage:Stage I, alive, 2412 days
3.9
TCGA-CW-6090-01A
0 years, male, white, stage:Stage I, alive, 2552 days
3.8
TCGA-B0-4821-01A
0 years, female, asian, stage:Stage III, dead, 1230 days
3.5
TCGA-T7-A92I-01A
0 years, female, black or african american, stage:Stage I, alive, 356 days
3.4
TCGA-AK-3426-01A
0 years, male, white, stage:Stage III, dead, 885 days
3.3
TCGA-G6-A5PC-01A
0 years, female, black or african american, stage:Stage IV, dead, 242 days
3.3
TCGA-B0-5109-01A
0 years, male, white, stage:Stage III, dead, 587 days
3.3
TCGA-BP-5191-01A
0 years, male, white, stage:Stage III, alive, 967 days
3.3
TCGA-BP-4354-01A
0 years, male, white, stage:Stage IV, dead, 1034 days
3.3
TCGA-BP-4761-01A
0 years, male, white, stage:Stage III, alive, 182 days
3.0
TCGA-CJ-4640-01A
0 years, male, white, stage:Stage III, alive, 3480 days
2.9
TCGA-BP-5185-01A
0 years, male, white, stage:Stage I, alive, 1132 days
2.9
TCGA-G6-A8L7-01A
0 years, female, black or african american, stage:Stage I, alive, 2133 days
2.7
TCGA-B0-4841-01A
0 years, male, white, stage:Stage IV, dead, 204 days
2.7
TCGA-CJ-4891-01A
0 years, female, white, stage:Stage III, dead, 819 days
2.5
TCGA-B4-5378-01A
0 years, male, white, stage:Stage I, alive, 175 days
2.1
TCGA-BP-5169-01A
0 years, male, white, stage:Stage I, alive, 193 days
2.1
TCGA-DV-5567-01A
0 years, female, black or african american, stage:Stage I, alive, 2004 days
2.0
TCGA-BP-4352-01A
0 years, female, white, stage:Stage IV, dead, 344 days
2.0
TCGA-B0-5702-01A
0 years, male, white, stage:Stage I, alive, 2172 days
2.0
TCGA-DV-5576-01A
0 years, female, black or african american, stage:Stage I, dead, 727 days
1.7
TCGA-B8-4619-01A
0 years, male, white, stage:Stage I, alive, 523 days
1.7
TCGA-DV-A4VZ-01A
0 years, male, black or african american, stage:Stage I, alive, 365 days
1.6
TCGA-B0-5084-01A
0 years, male, white, stage:Stage IV, dead, 222 days
1.3
TCGA-BP-4992-01A
0 years, male, white, stage:Stage I, alive, 501 days
1.2
TCGA-AK-3465-01A
0 years, female, black or african american, stage:Stage I, alive, 369 days
1.2
TCGA-B8-A54K-01A
0 years, male, black or african american, stage:Stage I, alive, 469 days
1.1
TCGA-A3-3374-01A
0 years, female, black or african american, stage:Stage I, alive, 1314 days
0.9
TCGA-B0-4697-01A
0 years, female, white, stage:Stage IV, dead, 578 days
0.9
TCGA-B8-A54G-01A
0 years, male, black or african american, stage:Stage I, alive, 53 days
0.8
TCGA-A3-3346-01A
0 years, male, white, stage:Stage I, dead, 137 days
0.7
TCGA-B2-3923-01A
0 years, male, white, stage:Stage II, alive, 992 days
0.7
TCGA-B0-4834-01A
0 years, male, white, stage:Stage I, dead, 2090 days
0.5
TCGA-B0-5107-01A
0 years, female, white, stage:Stage IV, dead, 927 days
0.4
TCGA-AK-3427-01A
0 years, male, white, stage:Stage I, alive, 3583 days
0.3
TCGA-AS-3777-01A
0 years, male, white, stage:Stage I, alive, 1238 days
0.3
TCGA-B0-5117-01A
0 years, male, white, stage:Stage I, alive, 1608 days
0.3
TCGA-AK-3433-01A
0 years, female, white, stage:Stage II, alive, 3409 days
0.3
TCGA-BP-4334-01A
0 years, male, white, stage:Stage III, dead, 645 days
0.2
TCGA-AK-3440-01A
0 years, male, white, stage:Stage I, alive, 2865 days
0.1
TCGA-AK-3443-01A
0 years, male, white, stage:Stage II, alive, 1423 days
0.1
TCGA-A3-3328-01A
0 years, male, white, stage:Stage I, alive, 1385 days
0.1
TCGA-AK-3447-01A
0 years, male, white, stage:Stage II, alive, 1217 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM200A is not prognostic in Kidney Renal Clear Cell Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.7
Number of samples
100
Samples
Sample
Description
TPM
ccRCC-20
0 years, female, NA, stage:pT3aN0M1, alive, 930 days
69.0
ccRCC-85
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
65.9
ccRCC-27
0 years, male, NA, stage:pT1aN0M0, alive, 1590 days
61.3
ccRCC-97
0 years, male, NA, stage:pT1aN2M1, dead, 990 days
56.5
ccRCC-72
0 years, male, NA, stage:pT1bN0M0, alive, 2760 days
47.5
ccRCC-77
0 years, male, NA, stage:pT1bN0M0, alive, 1860 days
47.3
ccRCC-105
0 years, male, NA, stage:pT1aN0M0, alive, 2190 days
46.4
ccRCC-52
0 years, female, NA, stage:pT3bN0M1, alive, 1350 days
43.5
ccRCC-93
0 years, male, NA, stage:pT1bN0M0, alive, 3660 days
42.4
ccRCC-7
0 years, female, NA, stage:pT2N0M0, alive, 330 days
42.3
ccRCC-90
0 years, male, NA, stage:pT1aN0M0, dead, 1170 days
42.3
ccRCC-29
0 years, female, NA, stage:pT1aN0M0, alive, 1710 days
41.6
ccRCC-104
0 years, female, NA, stage:pT1aN0M0, alive, 3480 days
41.2
ccRCC-17
0 years, female, NA, stage:pT1bN0M0, alive, 2220 days
41.2
ccRCC-58
0 years, male, NA, stage:pT1aN0M0, alive, 1110 days
40.9
ccRCC-15
0 years, female, NA, stage:pT2N0M0, dead, 2070 days
40.6
ccRCC-73
0 years, male, NA, stage:pT1aN0M0, alive, 2640 days
40.3
ccRCC-38
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
38.3
ccRCC-60
0 years, female, NA, stage:pT1aN0M0, alive, 1470 days
37.2
ccRCC-11
0 years, male, NA, stage:pT1aN0M0, alive, 2370 days
37.1
ccRCC-16
0 years, male, NA, stage:pT2N0M0, alive, 2190 days
36.7
ccRCC-89
0 years, male, NA, stage:pT1aN0M0, alive, 3510 days
36.7
ccRCC-54
0 years, male, NA, stage:pT1bN0M0, alive, 1200 days
36.4
ccRCC-96
0 years, male, NA, stage:pT1aN0M0, alive, 3930 days
36.4
ccRCC-23
0 years, male, NA, stage:pT1bN0M0, alive, 1170 days
34.7
ccRCC-5
0 years, male, NA, stage:pT1aN0M0, alive, 2940 days
33.6
ccRCC-62
0 years, male, NA, stage:pT1bN0M0, alive, 1620 days
33.3
ccRCC-102
0 years, male, NA, stage:pT1bN0M0, alive, 4260 days
32.8
ccRCC-45
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
31.2
ccRCC-87
0 years, male, NA, stage:pT1bN0M0, alive, 2370 days
30.4
ccRCC-79
0 years, male, NA, stage:pT1bN0M0, alive, 2670 days
30.3
ccRCC-28
0 years, male, NA, stage:pT1bN0M0, alive, 1530 days
29.6
ccRCC-76
0 years, female, NA, stage:pT3aN0M1, dead, 960 days
29.5
ccRCC-103
0 years, female, NA, stage:pT1aN0M0, alive, 4350 days
28.5
ccRCC-86
0 years, female, NA, stage:pT1bN0M0, alive, 3390 days
27.7
ccRCC-48
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
27.7
ccRCC-34
0 years, male, NA, stage:pT3bN0M1, alive, 1530 days
26.9
ccRCC-42
0 years, male, NA, stage:pT3aN0M0, alive, 1170 days
26.5
ccRCC-39
0 years, male, NA, stage:pT2N0M0, alive, 900 days
26.4
ccRCC-35
0 years, male, NA, stage:pT1aN0M0, alive, 1380 days
26.2
ccRCC-83
0 years, male, NA, stage:pT1aN0M0, alive, 300 days
25.5
ccRCC-100
0 years, male, NA, stage:pT1aN0M0, alive, 4260 days
25.2
ccRCC-24
0 years, male, NA, stage:pT3bN0M0, dead, 750 days
25.0
ccRCC-30
0 years, male, NA, stage:pT2N0M0, dead, 420 days
25.0
ccRCC-88
0 years, male, NA, stage:pT1aN0M0, alive, 2880 days
24.8
ccRCC-46
0 years, male, NA, stage:pT1bN0M0, alive, 990 days
24.5
ccRCC-8
0 years, male, NA, stage:pT1bN0M0, alive, 2400 days
24.3
ccRCC-19
0 years, female, NA, stage:pT2N0M0, alive, 2100 days
24.2
ccRCC-25
0 years, male, NA, stage:pT1aN0M0, alive, 1350 days
23.8
ccRCC-71
0 years, male, NA, stage:pT1bN0M0, alive, 2160 days
23.8
ccRCC-43
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
23.6
ccRCC-1
0 years, female, NA, stage:pT1bN0M0, alive, 3330 days
23.5
ccRCC-18
0 years, female, NA, stage:pT1aN0M0, alive, 2130 days
23.5
ccRCC-53
0 years, male, NA, stage:pT1aN0M0, alive, 1260 days
23.0
ccRCC-67
0 years, male, NA, stage:pT1aN0M0, dead, 1260 days
22.9
ccRCC-91
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
22.7
ccRCC-40
0 years, male, NA, stage:pT1aN0M0, alive, 1020 days
22.3
ccRCC-66
0 years, female, NA, stage:pT3bN0M1, alive, 2520 days
21.5
ccRCC-81
0 years, male, NA, stage:pT3aN2M0, dead, 1290 days
21.2
ccRCC-3
0 years, male, NA, stage:pT3bN1M0, dead, 240 days
21.2
ccRCC-61
0 years, male, NA, stage:pT1aN0M0, alive, 1470 days
21.0
ccRCC-12
0 years, male, NA, stage:pT1aN0M0, alive, 900 days
20.3
ccRCC-78
0 years, female, NA, stage:pT1aN0M0, alive, 2610 days
20.3
ccRCC-32
0 years, male, NA, stage:pT2N0M0, dead, 1320 days
20.2
ccRCC-6
0 years, male, NA, stage:pT1bN0M0, alive, 2820 days
19.0
ccRCC-22
0 years, male, NA, stage:pT3bN0M0, dead, 330 days
18.7
ccRCC-31
0 years, male, NA, stage:pT1aN0M0, alive, 1560 days
18.4
ccRCC-2
0 years, male, NA, stage:pT1aN0M1, dead, 2190 days
18.3
ccRCC-26
0 years, male, NA, stage:pT1bN0M0, alive, 1800 days
18.0
ccRCC-92
0 years, male, NA, stage:pT1aN0M0, alive, 3660 days
18.0
ccRCC-106
0 years, male, NA, stage:pT1aN0M0, dead, 1890 days
17.5
ccRCC-14
0 years, male, NA, stage:pT3cN0M0, alive, 2280 days
17.4
ccRCC-13
0 years, female, NA, stage:pT3aN2M0, dead, 540 days
17.2
ccRCC-4
0 years, male, NA, stage:pT1bN0M0, dead, 270 days
16.5
ccRCC-82
0 years, male, NA, stage:pT1aN0M0, alive, 3090 days
16.4
ccRCC-80
0 years, male, NA, stage:pT2N0M0, alive, 3000 days
16.3
ccRCC-49
0 years, male, NA, stage:pT3bN0M0, alive, 1290 days
16.2
ccRCC-99
0 years, female, NA, stage:pT2N0M0, alive, 3330 days
16.1
ccRCC-70
0 years, male, NA, stage:pT4N0M1, dead, 540 days
15.4
ccRCC-94
0 years, male, NA, stage:pT1bN0M0, dead, 480 days
15.2
ccRCC-98
0 years, male, NA, stage:pT1aN0M0, alive, 30 days
14.8
ccRCC-51
0 years, male, NA, stage:pT3aN0M0, alive, 1410 days
14.8
ccRCC-68
0 years, male, NA, stage:pT1bN0M0, alive, 2640 days
14.7
ccRCC-50
0 years, male, NA, stage:pT3bN0M0, alive, 900 days
14.6
ccRCC-55
0 years, female, NA, stage:pT3bN0M0, alive, 1260 days
14.3
ccRCC-64
0 years, male, NA, stage:pT3aN0M0, alive, 2430 days
13.7
ccRCC-44
0 years, female, NA, stage:pT1bN0M0, alive, 1050 days
13.4
ccRCC-56
0 years, male, NA, stage:pT1aN0M0, alive, 1950 days
11.9
ccRCC-21
0 years, male, NA, stage:pT1bN0M0, alive, 1080 days
11.3
ccRCC-65
0 years, male, NA, stage:pT3bN0M1, dead, 300 days
10.8
ccRCC-84
0 years, male, NA, stage:pT1bN0M0, alive, 2010 days
10.8
ccRCC-69
0 years, male, NA, stage:pT1aN0M0, alive, 2670 days
10.6
ccRCC-59
0 years, male, NA, stage:pT1bN0M0, alive, 930 days
10.0
ccRCC-95
0 years, male, NA, stage:pT1bN0M0, alive, 3960 days
9.1
ccRCC-9
0 years, male, NA, stage:pT2N1M1, dead, 360 days
8.5
ccRCC-36
0 years, male, NA, stage:pT2N0M0, alive, 1410 days
7.5
ccRCC-37
0 years, female, NA, stage:pT1aN0M0, alive, 1500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM200A is not prognostic in Kidney Renal Papillary Cell Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
282
Samples
Sample
Description
TPM
TCGA-B3-4103-01A
0 years, male, white, stage:Stage I, alive, 930 days
131.5
TCGA-A4-7288-01A
0 years, female, white, stage:'--, alive, 1857 days
73.4
TCGA-DZ-6133-01A
0 years, female, white, stage:Stage I, dead, 1557 days
62.9
TCGA-G7-7501-01A
0 years, female, black or african american, stage:Stage III, dead, 624 days
61.8
TCGA-BQ-5876-01A
0 years, male, white, stage:Stage I, alive, 586 days
61.3
TCGA-B9-5155-01A
0 years, male, white, stage:Stage III, alive, 665 days
60.9
TCGA-HE-7129-01A
male, stage:Stage II, alive, 2492 days
57.7
TCGA-IZ-8196-01A
0 years, male, white, stage:Stage I, alive, 649 days
52.0
TCGA-A4-7583-01A
0 years, male, black or african american, stage:Stage I, alive, 3 days
50.3
TCGA-BQ-7051-01A
0 years, male, white, stage:Stage II, alive, 1533 days
48.4
TCGA-B1-A655-01A
0 years, female, white, stage:Stage I, alive, 510 days
46.5
TCGA-A4-A5Y1-01A
0 years, male, white, stage:Stage III, dead, 395 days
45.5
TCGA-B3-3925-01A
0 years, male, white, stage:Stage III, alive, 1029 days
45.1
TCGA-A4-7997-01A
0 years, male, white, stage:Stage I, alive, 927 days
42.7
TCGA-BQ-5892-01A
0 years, male, white, stage:Stage I, alive, 364 days
42.2
TCGA-2Z-A9JS-01A
0 years, male, white, stage:Stage I, dead, 492 days
42.1
TCGA-A4-8515-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 709 days
40.4
TCGA-BQ-5884-01A
0 years, female, black or african american, stage:Stage I, alive, 792 days
40.1
TCGA-GL-A9DC-01A
0 years, female, white, stage:Stage I, alive, 392 days
39.9
TCGA-B9-5156-01A
0 years, male, white, stage:'--, alive, 1338 days
39.7
TCGA-GL-6846-01A
0 years, male, white, stage:Stage IV, alive, 5925 days
39.6
TCGA-AL-3471-01A
0 years, male, white, stage:Stage I, dead, 1500 days
39.5
TCGA-A4-8630-01A
0 years, female, white, stage:Stage I, alive, 436 days
38.9
TCGA-Y8-A897-01A
0 years, female, white, stage:Stage I, alive, 549 days
38.4
TCGA-DW-7842-01A
0 years, male, white, stage:Stage I, alive, 92 days
38.3
TCGA-GL-8500-01A
0 years, male, white, stage:Stage I, alive, 841 days
38.0
TCGA-A4-A4ZT-01A
0 years, female, white, stage:Stage I, alive, 516 days
37.1
TCGA-A4-8310-01A
0 years, male, white, stage:Stage III, alive, 780 days
36.4
TCGA-B3-A6W5-01A
0 years, male, black or african american, stage:Stage I, alive, 309 days
36.0
TCGA-HE-A5NH-01A
0 years, male, stage:Stage I, alive, 791 days
35.7
TCGA-A4-7734-01A
0 years, female, white, stage:Stage I, alive, 27 days
35.2
TCGA-A4-8516-01A
0 years, male, white, stage:Stage III, alive, 23 days
35.1
TCGA-G7-6792-01A
0 years, male, black or african american, stage:Stage I, alive, 2765 days
35.1
TCGA-BQ-5891-01A
0 years, female, white, stage:Stage III, alive, 29 days
34.9
TCGA-UZ-A9PS-01A
0 years, female, black or african american, stage:Stage II, alive, 2167 days
34.8
TCGA-AL-3473-01A
0 years, male, white, stage:Stage II, alive, 1906 days
34.7
TCGA-G7-6797-01A
0 years, male, white, stage:Stage III, alive, 765 days
34.0
TCGA-DW-7838-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.9
TCGA-Y8-A894-01A
0 years, female, white, stage:Stage I, alive, 567 days
33.8
TCGA-A4-7584-01A
0 years, male, black or african american, stage:Stage I, alive, 650 days
33.1
TCGA-BQ-7053-01A
0 years, female, black or african american, stage:Stage III, alive, 1516 days
32.6
TCGA-Y8-A8S0-01A
0 years, male, white, stage:Stage I, alive, 183 days
32.3
TCGA-MH-A55W-01A
0 years, male, black or african american, stage:Stage I, alive, 1043 days
32.2
TCGA-A4-A5XZ-01A
0 years, female, white, stage:Stage II, alive, 479 days
32.1
TCGA-B9-A5W9-01A
0 years, male, white, stage:Stage I, alive, 5 days
32.0
TCGA-B1-7332-01A
0 years, female, black or african american, stage:Stage II, alive, 1141 days
31.8
TCGA-UZ-A9PU-01A
0 years, male, white, stage:Stage I, dead, 933 days
31.6
TCGA-DZ-6135-01A
0 years, male, stage:Stage I, alive, 2269 days
31.0
TCGA-SX-A7SQ-01A
0 years, male, white, stage:Stage I, alive, 1266 days
30.1
TCGA-UZ-A9PP-01A
0 years, male, white, stage:Stage I, alive, 3010 days
29.9
TCGA-SX-A71W-01A
0 years, male, white, stage:Stage I, alive, 1076 days
29.8
TCGA-P4-A5EB-01A
0 years, male, white, stage:Stage I, alive, 2477 days
29.7
TCGA-F9-A97G-01A
0 years, male, asian, stage:Stage III, alive, 13 days
29.5
TCGA-EV-5901-01A
0 years, female, white, stage:Stage I, alive, 1040 days
28.9
TCGA-5P-A9KC-01A
0 years, female, white, stage:'--, alive, 377 days
28.5
TCGA-GL-A9DE-01A
0 years, male, black or african american, stage:Stage I, alive, 496 days
28.2
TCGA-B3-8121-01A
0 years, female, black or african american, stage:Stage I, alive, 379 days
28.2
TCGA-SX-A71S-01A
0 years, female, white, stage:Stage I, alive, 1504 days
28.1
TCGA-Y8-A8RZ-01A
0 years, male, white, stage:Stage I, alive, 205 days
27.7
TCGA-B9-A8YH-01A
0 years, male, black or african american, stage:Stage I, alive, 532 days
27.5
TCGA-2Z-A9JK-01A
0 years, male, white, stage:Stage III, alive, 1186 days
27.5
TCGA-2Z-A9JJ-01A
0 years, female, white, stage:Stage I, alive, 1213 days
27.4
TCGA-G7-A8LE-01A
0 years, male, white, stage:Stage I, alive, 2453 days
27.2
TCGA-SX-A71V-01A
0 years, male, white, stage:Stage I, alive, 876 days
27.2
TCGA-KV-A74V-01A
0 years, male, white, stage:Stage I, alive, 347 days
27.1
TCGA-BQ-5875-01A
0 years, female, white, stage:Stage III, alive, 2639 days
26.9
TCGA-PJ-A5Z9-01A
0 years, female, white, stage:Stage I, alive, 540 days
26.8
TCGA-B9-4117-01A
0 years, female, black or african american, stage:'--, alive, 14 days
26.8
TCGA-J7-6720-01A
0 years, male, asian, stage:Stage I, alive, 388 days
26.3
TCGA-2Z-A9J3-01A
0 years, male, white, stage:Stage II, dead, 1771 days
26.3
TCGA-UZ-A9PK-01A
0 years, male, white, stage:Stage I, alive, 3571 days
26.3
TCGA-EV-5903-01A
0 years, male, white, stage:Stage I, alive, 757 days
26.2
TCGA-B9-A5W7-01A
0 years, male, black or african american, stage:Stage I, alive, 585 days
26.1
TCGA-UZ-A9PR-01A
0 years, male, white, stage:Stage I, alive, 2191 days
26.1
TCGA-B1-A657-01A
0 years, male, white, stage:Stage I, alive, 641 days
25.9
TCGA-2Z-A9JR-01A
0 years, male, white, stage:Stage I, alive, 161 days
25.8
TCGA-BQ-7049-01A
0 years, female, white, stage:Stage I, dead, 1364 days
25.7
TCGA-MH-A561-01A
0 years, male, white, stage:Stage I, alive, 841 days
25.3
TCGA-BQ-7061-01A
0 years, female, white, stage:Stage I, alive, 218 days
25.3
TCGA-B1-5398-01A
0 years, male, white, stage:Stage III, alive, 1251 days
25.2
TCGA-B3-3926-01A
0 years, female, white, stage:Stage I, alive, 883 days
25.1
TCGA-UZ-A9PJ-01A
0 years, male, white, stage:Stage I, dead, 797 days
25.0
TCGA-IA-A40Y-01A
0 years, female, white, stage:Stage III, alive, 62 days
24.9
TCGA-GL-A59R-01A
0 years, male, white, stage:Stage III, alive, 378 days
24.7
TCGA-5P-A9JV-01A
0 years, male, white, stage:'--, alive, 2043 days
24.4
TCGA-SX-A7SR-01A
0 years, male, white, stage:Stage II, alive, 805 days
24.3
TCGA-5P-A9K6-01A
0 years, male, white, stage:'--, alive, 1914 days
23.2
TCGA-BQ-7046-01A
0 years, male, white, stage:Stage I, alive, 2948 days
23.1
TCGA-HE-A5NJ-01A
0 years, male, stage:'--, alive, 1726 days
23.0
TCGA-UZ-A9PQ-01A
0 years, male, black or african american, stage:Stage III, dead, 2624 days
22.9
TCGA-DW-7836-01A
0 years, male, white, stage:Stage I, alive, 1093 days
22.9
TCGA-A4-8517-01A
0 years, male, white, stage:Stage I, alive, 597 days
22.8
TCGA-UZ-A9PV-01A
0 years, male, white, stage:Stage I, alive, 1444 days
22.7
TCGA-4A-A93X-01A
0 years, male, white, stage:Stage IV, alive, 390 days
22.5
TCGA-5P-A9KA-01A
0 years, male, white, stage:'--, alive, 395 days
22.4
TCGA-UZ-A9Q1-01A
0 years, female, white, stage:Stage I, alive, 730 days
22.3
TCGA-BQ-5890-01A
0 years, male, white, stage:Stage III, alive, 233 days
22.3
TCGA-5P-A9K4-01A
0 years, male, white, stage:'--, alive, 2184 days
21.8
TCGA-DW-7837-01A
0 years, male, black or african american, stage:Stage I, alive, 1142 days
21.8
TCGA-2Z-A9JD-01A
0 years, male, white, stage:Stage I, alive, 1060 days
21.5
TCGA-B9-A8YI-01A
0 years, male, black or african american, stage:Stage I, alive, 374 days
21.5
TCGA-B9-4113-01A
0 years, male, black or african american, stage:Stage I, dead, 1536 days
21.5
TCGA-B9-4114-01A
0 years, male, black or african american, stage:'--, alive, 857 days
21.1
TCGA-DW-7834-01A
0 years, male, white, stage:Stage I, alive, 3950 days
21.1
TCGA-UZ-A9PX-01A
0 years, male, white, stage:Stage I, alive, 1981 days
21.1
TCGA-2Z-A9J8-01A
0 years, male, white, stage:Stage I, alive, 2790 days
20.8
TCGA-UZ-A9PO-01A
0 years, male, white, stage:Stage I, alive, 1911 days
20.7
TCGA-DZ-6134-01A
0 years, male, white, stage:Stage I, alive, 1856 days
20.7
TCGA-2Z-A9JG-01A
0 years, male, white, stage:Stage I, alive, 1662 days
20.4
TCGA-BQ-7060-01A
0 years, male, american indian or alaska native, stage:Stage I, alive, 214 days
20.2
TCGA-BQ-5878-01A
0 years, female, white, stage:Stage III, alive, 1938 days
20.0
TCGA-G7-A4TM-01A
0 years, male, black or african american, stage:Stage I, alive, 768 days
19.9
TCGA-SX-A71U-01A
0 years, male, white, stage:Stage I, alive, 1357 days
19.7
TCGA-DZ-6132-01A
0 years, male, stage:Stage I, alive, 2460 days
19.6
TCGA-J7-8537-01A
0 years, female, asian, stage:Stage III, dead, 321 days
19.4
TCGA-Y8-A895-01A
0 years, male, white, stage:Stage I, alive, 484 days
19.2
TCGA-AL-3468-01A
0 years, male, white, stage:Stage II, dead, 2331 days
18.7
TCGA-A4-A5DU-01A
0 years, female, white, stage:Stage I, alive, 496 days
18.6
TCGA-GL-A59T-01A
0 years, male, white, stage:Stage I, alive, 546 days
18.4
TCGA-IA-A83W-01A
0 years, male, white, stage:Stage I, dead, 2043 days
17.9
TCGA-UZ-A9PN-01A
0 years, male, white, stage:Stage III, dead, 1136 days
17.8
TCGA-V9-A7HT-01A
0 years, male, black or african american, stage:Stage II, alive, 965 days
17.7
TCGA-BQ-7062-01A
0 years, male, black or african american, stage:Stage I, alive, 116 days
17.5
TCGA-B9-4115-01A
0 years, male, black or african american, stage:Stage I, alive, 803 days
17.4
TCGA-BQ-5877-01A
0 years, male, black or african american, stage:Stage IV, dead, 270 days
17.2
TCGA-UN-AAZ9-01A
0 years, female, black or african american, stage:Stage I, alive, 548 days
16.9
TCGA-2Z-A9J6-01A
0 years, male, white, stage:Stage I, alive, 1731 days
16.9
TCGA-DW-5561-01A
0 years, male, black or african american, stage:Stage I, alive, 414 days
16.8
TCGA-P4-AAVL-01A
0 years, male, white, stage:Stage III, dead, 487 days
16.7
TCGA-A4-7585-01A
0 years, male, white, stage:Stage III, dead, 1070 days
16.7
TCGA-GL-7773-01A
0 years, male, white, stage:Stage I, alive, 393 days
16.0
TCGA-BQ-7059-01A
0 years, male, white, stage:Stage I, alive, 232 days
15.9
TCGA-HE-A5NF-01A
0 years, male, stage:Stage I, alive, 2582 days
15.8
TCGA-2Z-A9JE-01A
0 years, male, white, stage:Stage I, alive, 1728 days
15.8
TCGA-SX-A7SO-01A
0 years, male, white, stage:Stage I, alive, 1257 days
15.7
TCGA-A4-A5Y0-01A
0 years, female, white, stage:Stage I, alive, 252 days
15.6
TCGA-IZ-8195-01A
0 years, male, white, stage:Stage II, alive, 677 days
15.6
TCGA-BQ-5882-01A
0 years, male, stage:Stage III, dead, 658 days
15.6
TCGA-BQ-7048-01A
0 years, male, white, stage:Stage III, alive, 2839 days
15.5
TCGA-BQ-7044-01A
0 years, male, white, stage:Stage III, alive, 3760 days
15.5
TCGA-2Z-A9JL-01A
0 years, male, black or african american, stage:Stage I, alive, 1006 days
15.5
TCGA-P4-A5E7-01A
0 years, female, white, stage:Stage I, alive, 2649 days
15.4
TCGA-A4-7732-01A
0 years, male, black or african american, stage:'--, alive, 582 days
15.3
TCGA-B9-4116-01A
0 years, female, black or african american, stage:'--, alive, 627 days
15.2
TCGA-5P-A9K9-01A
0 years, female, white, stage:'--, dead, 589 days
15.2
TCGA-Y8-A8RY-01A
0 years, male, white, stage:Stage I, alive, 769 days
15.1
TCGA-DW-7840-01A
0 years, male, black or african american, stage:Stage I, alive, 114 days
15.1
TCGA-2Z-A9JM-01A
0 years, male, white, stage:Stage I, alive, 934 days
14.9
TCGA-5P-A9JZ-01A
0 years, female, white, stage:'--, alive, 2744 days
14.8
TCGA-AT-A5NU-01A
0 years, male, white, stage:Stage I, alive, 67 days
14.5
TCGA-IA-A83V-01A
0 years, male, white, stage:Stage I, dead, 2941 days
14.5
TCGA-A4-A57E-01A
0 years, male, white, stage:Stage IV, dead, 258 days
14.3
TCGA-5P-A9KF-01A
0 years, male, white, stage:'--, alive, 845 days
14.3
TCGA-A4-A48D-01A
0 years, male, black or african american, stage:Stage I, alive, 379 days
14.3
TCGA-5P-A9JU-01A
0 years, male, white, stage:Stage III, alive, 373 days
14.1
TCGA-Y8-A898-01A
0 years, male, white, stage:Stage I, alive, 475 days
14.0
TCGA-P4-AAVM-01A
0 years, male, white, stage:Stage I, alive, 1539 days
13.9
TCGA-BQ-7050-01A
0 years, female, white, stage:Stage I, alive, 1864 days
13.7
TCGA-EV-5902-01A
0 years, male, white, stage:Stage I, alive, 578 days
13.7
TCGA-DZ-6131-01A
0 years, male, white, stage:Stage III, alive, 2429 days
13.6
TCGA-5P-A9K8-01A
0 years, female, white, stage:'--, alive, 1309 days
13.6
TCGA-AL-3466-01A
0 years, male, white, stage:Stage IV, dead, 293 days
13.5
TCGA-P4-AAVK-01A
0 years, male, white, stage:Stage III, alive, 1590 days
13.3
TCGA-4A-A93W-01A
0 years, female, white, stage:Stage I, alive, 4 days
13.1
TCGA-KV-A6GD-01A
0 years, male, white, stage:Stage I, alive, 560 days
13.1
TCGA-A4-8311-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.1
TCGA-2Z-A9J1-01A
0 years, male, white, stage:Stage I, alive, 2298 days
13.0
TCGA-IA-A40U-01A
0 years, male, white, stage:Stage III, alive, 511 days
13.0
TCGA-DW-7839-01A
0 years, female, white, stage:Stage I, alive, 419 days
12.9
TCGA-G7-6796-01A
0 years, male, white, stage:Stage I, alive, 2173 days
12.9
TCGA-G7-6789-01A
0 years, female, white, stage:Stage IV, dead, 122 days
12.8
TCGA-UZ-A9PM-01A
0 years, male, white, stage:Stage II, alive, 3811 days
12.8
TCGA-UZ-A9PL-01A
0 years, male, white, stage:Stage II, alive, 3152 days
12.7
TCGA-GL-A9DD-01A
0 years, male, white, stage:Stage I, alive, 341 days
12.6
TCGA-HE-A5NL-01A
0 years, male, stage:Stage I, alive, 767 days
12.4
TCGA-5P-A9KE-01A
0 years, male, white, stage:'--, alive, 824 days
12.3
TCGA-SX-A7SP-01A
0 years, female, white, stage:Stage I, dead, 496 days
12.3
TCGA-SX-A7SM-01A
0 years, male, black or african american, stage:Stage IV, dead, 363 days
12.0
TCGA-MH-A55Z-01A
0 years, male, black or african american, stage:Stage I, alive, 845 days
12.0
TCGA-DW-7841-01A
0 years, male, black or african american, stage:Stage I, alive, 445 days
11.8
TCGA-IA-A40X-01A
0 years, female, black or african american, stage:Stage I, alive, 608 days
11.7
TCGA-A4-8518-01A
0 years, male, white, stage:Stage I, alive, 600 days
11.7
TCGA-MH-A855-01A
0 years, female, black or african american, stage:Stage II, alive, 369 days
11.6
TCGA-B1-A47M-01A
0 years, male, black or african american, stage:Stage III, alive, 659 days
11.5
TCGA-SX-A7SU-01A
0 years, male, stage:Stage I, alive, 1331 days
11.4
TCGA-2Z-A9J7-01A
0 years, male, white, stage:Stage IV, dead, 139 days
11.3
TCGA-BQ-7045-01A
0 years, male, black or african american, stage:Stage I, dead, 1468 days
11.3
TCGA-SX-A7SN-01A
0 years, male, white, stage:Stage I, alive, 578 days
11.2
TCGA-B9-A44B-01A
0 years, male, black or african american, stage:Stage III, alive, 361 days
11.1
TCGA-IA-A83T-01A
0 years, male, white, stage:'--, dead, 2684 days
11.1
TCGA-MH-A560-01A
0 years, male, white, stage:Stage I, alive, 924 days
11.1
TCGA-UZ-A9PZ-01A
0 years, male, white, stage:Stage III, alive, 657 days
11.0
TCGA-PJ-A5Z8-01A
0 years, female, white, stage:Stage I, alive, 600 days
11.0
TCGA-5P-A9JY-01A
0 years, male, white, stage:'--, dead, 1508 days
10.9
TCGA-BQ-5885-01A
0 years, male, white, stage:Stage III, alive, 921 days
10.8
TCGA-IA-A83S-01A
0 years, male, white, stage:'--, dead, 2609 days
10.8
TCGA-A4-7286-01A
0 years, male, white, stage:'--, alive, 554 days
10.7
TCGA-O9-A75Z-01A
0 years, male, white, stage:Stage I, alive, 471 days
10.7
TCGA-BQ-5880-01A
0 years, male, white, stage:Stage III, dead, 1314 days
10.6
TCGA-5P-A9K3-01A
0 years, male, white, stage:'--, dead, 471 days
10.4
TCGA-B9-A69E-01A
0 years, male, white, stage:Stage III, alive, 452 days
10.4
TCGA-SX-A71R-01A
0 years, male, white, stage:Stage I, alive, 1457 days
10.2
TCGA-GL-A4EM-01A
0 years, male, white, stage:Stage I, alive, 32 days
10.0
TCGA-G7-6795-01A
0 years, male, white, stage:Stage I, alive, 1194 days
9.9
TCGA-5P-A9K0-01A
0 years, male, white, stage:'--, alive, 677 days
9.7
TCGA-P4-A5E6-01A
0 years, male, black or african american, stage:Stage III, alive, 3035 days
9.6
TCGA-Y8-A896-01A
0 years, male, white, stage:Stage III, alive, 567 days
9.5
TCGA-BQ-5881-01A
0 years, male, white, stage:Stage I, alive, 1454 days
9.1
TCGA-2K-A9WE-01A
0 years, male, white, stage:Stage II, alive, 214 days
8.8
TCGA-P4-AAVO-01A
0 years, male, white, stage:Stage I, alive, 2400 days
8.8
TCGA-B1-A654-01A
0 years, female, black or african american, stage:Stage I, alive, 616 days
8.7
TCGA-BQ-7058-01A
0 years, male, white, stage:Stage III, dead, 343 days
8.6
TCGA-5P-A9K2-01A
0 years, male, white, stage:'--, alive, 2392 days
8.4
TCGA-B9-A5W8-01A
0 years, male, black or african american, stage:Stage II, alive, 524 days
8.4
TCGA-B3-4104-01A
0 years, male, white, stage:Stage II, alive, 1049 days
8.4
TCGA-B9-4617-01A
0 years, male, black or african american, stage:'--, alive, 35 days
8.3
TCGA-BQ-7056-01A
0 years, female, white, stage:Stage III, alive, 612 days
8.1
TCGA-2Z-A9J5-01A
0 years, male, white, stage:Stage II, alive, 3050 days
8.1
TCGA-A4-7287-01A
0 years, female, white, stage:Stage I, dead, 597 days
7.7
TCGA-IZ-A6M8-01A
0 years, male, black or african american, stage:Stage I, alive, 497 days
7.6
TCGA-BQ-5887-01A
0 years, male, white, stage:Stage III, alive, 771 days
7.6
TCGA-2Z-A9JI-01A
0 years, male, white, stage:Stage III, alive, 1567 days
7.6
TCGA-A4-A6HP-01A
0 years, male, white, stage:Stage I, alive, 379 days
7.6
TCGA-A4-7828-01A
0 years, female, black or african american, stage:Stage I, alive, 238 days
7.4
TCGA-SX-A7SS-01A
0 years, male, white, stage:Stage I, alive, 1615 days
7.1
TCGA-HE-A5NK-01A
0 years, male, stage:'--, alive, 2228 days
7.0
TCGA-B1-A656-01A
0 years, male, white, stage:Stage I, alive, 618 days
7.0
TCGA-A4-8098-01A
0 years, male, black or african american, stage:Stage I, alive, 896 days
6.8
TCGA-2Z-A9JP-01A
0 years, male, white, stage:Stage I, alive, 893 days
6.7
TCGA-4A-A93Y-01A
0 years, female, black or african american, stage:Stage II, alive, 352 days
6.6
TCGA-IZ-A6M9-01A
0 years, male, white, stage:Stage I, alive, 376 days
6.5
TCGA-5P-A9JW-01A
0 years, male, white, stage:'--, alive, 3241 days
6.3
TCGA-BQ-5886-01A
0 years, male, white, stage:Stage III, alive, 792 days
6.2
TCGA-HE-A5NI-01A
0 years, male, stage:Stage I, alive, 360 days
6.2
TCGA-F9-A7VF-01A
0 years, female, white, stage:Stage I, alive, 73 days
6.0
TCGA-AL-7173-01A
0 years, female, white, stage:Stage IV, alive, 2060 days
5.7
TCGA-AL-3472-01A
0 years, male, black or african american, stage:'--, alive, 2029 days
5.7
TCGA-AL-3467-01A
0 years, female, white, stage:'--, alive, 2135 days
5.7
TCGA-2Z-A9JO-01A
0 years, female, black or african american, stage:Stage I, alive, 949 days
5.6
TCGA-G7-A8LC-01A
0 years, male, white, stage:Stage I, alive, 702 days
5.3
TCGA-MH-A854-01A
0 years, female, black or african american, stage:Stage I, alive, 536 days
4.9
TCGA-Y8-A8S1-01A
0 years, male, white, stage:Stage I, alive, 404 days
4.8
TCGA-MH-A856-01A
0 years, male, white, stage:Stage I, alive, 947 days
4.8
TCGA-G7-A8LB-01A
0 years, male, white, stage:Stage IV, alive, 547 days
4.7
TCGA-B1-A47N-01A
0 years, male, white, stage:Stage I, alive, 1110 days
4.7
TCGA-B1-A47O-01A
0 years, female, white, stage:Stage I, alive, 842 days
4.7
TCGA-MH-A562-01A
0 years, male, black or african american, stage:Stage I, alive, 616 days
4.7
TCGA-2Z-A9JQ-01A
0 years, male, white, stage:Stage I, alive, 778 days
4.6
TCGA-SX-A7SL-01A
0 years, male, stage:Stage I, alive, 823 days
4.5
TCGA-AL-A5DJ-01A
0 years, female, white, stage:Stage III, dead, 1498 days
4.2
TCGA-BQ-5889-01A
0 years, male, white, stage:Stage IV, dead, 329 days
4.1
TCGA-2Z-A9J2-01A
0 years, female, white, stage:Stage I, alive, 1795 days
4.0
TCGA-MH-A857-01A
0 years, male, black or african american, stage:Stage I, alive, 890 days
4.0
TCGA-F9-A7Q0-01A
0 years, female, asian, stage:Stage I, alive, 398 days
3.9
TCGA-BQ-5883-01A
0 years, female, black or african american, stage:Stage I, alive, 1242 days
3.7
TCGA-G7-6793-01A
0 years, female, white, stage:Stage IV, dead, 336 days
3.7
TCGA-DW-5560-01A
0 years, female, white, stage:Stage I, alive, 1486 days
3.7
TCGA-WN-A9G9-01A
0 years, male, white, stage:Stage I, alive, 791 days
3.6
TCGA-WN-AB4C-01A
0 years, female, white, stage:Stage I, alive, 1188 days
3.5
TCGA-KV-A6GE-01A
0 years, male, white, stage:Stage I, alive, 885 days
3.3
TCGA-2Z-A9JT-01A
0 years, male, white, stage:Stage I, alive, 684 days
2.9
TCGA-BQ-5894-01A
0 years, male, stage:Stage IV, alive, 84 days
2.8
TCGA-A4-7915-01A
0 years, female, black or african american, stage:Stage II, alive, 7 days
2.7
TCGA-BQ-5888-01A
0 years, female, white, stage:Stage I, alive, 403 days
2.6
TCGA-BQ-5879-01A
0 years, female, white, stage:Stage III, dead, 697 days
2.6
TCGA-P4-A5ED-01A
0 years, male, white, stage:Stage I, alive, 2816 days
2.3
TCGA-GL-7966-01A
0 years, female, white, stage:Stage III, alive, 112 days
2.2
TCGA-UZ-A9Q0-01A
0 years, male, white, stage:Stage I, alive, 3368 days
2.2
TCGA-BQ-5893-01A
0 years, male, white, stage:Stage IV, dead, 241 days
2.0
TCGA-Q2-A5QZ-01A
0 years, female, black or african american, stage:Stage III, alive, 428 days
2.0
TCGA-G7-A8LD-01A
0 years, male, white, stage:Stage III, dead, 514 days
1.4
TCGA-P4-A5EA-01A
0 years, female, white, stage:Stage III, dead, 201 days
1.4
TCGA-2Z-A9JN-01A
0 years, female, black or african american, stage:Stage I, alive, 740 days
1.1
TCGA-J7-A8I2-01A
0 years, male, asian, stage:Stage I, alive, 307 days
1.1
TCGA-5P-A9KH-01A
0 years, male, white, stage:'--, alive, 2051 days
1.0
TCGA-F9-A8NY-01A
0 years, female, asian, stage:Stage IV, alive, 36 days
0.8
TCGA-F9-A4JJ-01A
0 years, female, black or african american, stage:Stage III, dead, 325 days
0.8
TCGA-2Z-A9J9-01A
0 years, male, black or african american, stage:Stage I, alive, 2294 days
0.7
TCGA-HE-7130-01A
female, stage:Stage III, alive, 1770 days
0.7
TCGA-A4-8312-01A
0 years, male, black or african american, stage:Stage I, alive, 708 days
0.7
TCGA-P4-A5E8-01A
0 years, male, white, stage:Stage III, dead, 1306 days
0.6
TCGA-BQ-7055-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
Show allShow less
RENAL CELL CARCINOMA - Protein relative expression (CPTAC)
Number of samples
194
Samples
Sample ID
Sample type
nRPX
CPT0026410003
Tumor
N/A
CPT0002370001
Normal
N/A
CPT0000790001
Normal
N/A
CPT0019130003
Tumor
N/A
CPT0088570001
Normal
N/A
CPT0065820001
Normal
N/A
CPT0025880003
Tumor
N/A
CPT0076330003
Tumor
N/A
CPT0001180009
Tumor
N/A
CPT0078800003
Tumor
N/A
CPT0078660003
Tumor
N/A
CPT0065690003
Tumor
N/A
CPT0078930003
Tumor
N/A
CPT0011240003
Tumor
N/A
CPT0084560003
Tumor
N/A
CPT0012670003
Tumor
N/A
CPT0002350011
Tumor
N/A
CPT0012920003
Normal
N/A
CPT0064370003
Tumor
N/A
CPT0088900003
Tumor
N/A
CPT0006730001
Normal
N/A
CPT0007870001
Normal
N/A
CPT0087040003
Tumor
N/A
CPT0079380003
Tumor
N/A
CPT0025170003
Tumor
N/A
CPT0024670003
Tumor
N/A
CPT0012640003
Normal
N/A
CPT0078830003
Tumor
N/A
CPT0021240003
Tumor
N/A
CPT0071150004
Tumor
N/A
CPT0089020003
Tumor
N/A
CPT0088970003
Tumor
N/A
CPT0066480003
Tumor
N/A
CPT0000870016
Tumor
N/A
CPT0092790003
Tumor
N/A
CPT0025610001
Normal
N/A
CPT0063330001
Normal
N/A
CPT0001350001
Normal
N/A
CPT0078940001
Normal
N/A
CPT0086830003
Normal
N/A
CPT0088760003
Tumor
N/A
CPT0092190003
Normal
N/A
CPT0002270011
Tumor
N/A
CPT0088550004
Tumor
N/A
CPT0023710001
Normal
N/A
CPT0077140001
Normal
N/A
CPT0025230003
Tumor
N/A
CPT0025050003
Tumor
N/A
CPT0075720003
Tumor
N/A
CPT0012570003
Normal
N/A
CPT0089040001
Normal
N/A
CPT0017850003
Tumor
N/A
CPT0019990003
Tumor
N/A
CPT0012900004
Tumor
N/A
CPT0000780007
Tumor
N/A
CPT0023360001
Normal
N/A
CPT0001510001
Normal
N/A
CPT0078840001
Normal
N/A
CPT0010110003
Tumor
N/A
CPT0086890003
Normal
N/A
CPT0092290003
Tumor
N/A
CPT0020120003
Tumor
N/A
CPT0088640003
Normal
N/A
CPT0088500001
Normal
N/A
CPT0069010001
Normal
N/A
CPT0006440003
Tumor
N/A
CPT0063630003
Tumor
N/A
CPT0001550001
Normal
N/A
CPT0086950003
Tumor
N/A
CPT0014350001
Normal
N/A
CPT0014470001
Normal
N/A
CPT0086360003
Tumor
N/A
CPT0069160003
Tumor
N/A
CPT0006950001
Normal
N/A
CPT0007860003
Tumor
N/A
CPT0082010001
Normal
N/A
CPT0079230003
Tumor
N/A
CPT0001340003
Tumor
N/A
CPT0011410003
Tumor
N/A
CPT0079180003
Tumor
N/A
CPT0012080003
Tumor
N/A
CPT0084590001
Normal
N/A
CPT0063640001
Normal
N/A
CPT0009000003
Tumor
N/A
CPT0010170001
Normal
N/A
CPT0079270003
Tumor
N/A
CPT0069190001
Normal
N/A
CPT0001270001
Normal
N/A
CPT0015810003
Tumor
N/A
CPT0025110003
Tumor
N/A
CPT0024680001
Normal
N/A
CPT0012090003
Normal
N/A
CPT0009020003
Normal
N/A
CPT0077310003
Tumor
N/A
CPT0077490003
Tumor
N/A
CPT0014160003
Tumor
N/A
CPT0078530001
Normal
N/A
CPT0020020001
Normal
N/A
CPT0066520001
Normal
N/A
CPT0014370004
Tumor
N/A
CPT0001500009
Tumor
N/A
CPT0081600003
Tumor
N/A
CPT0001190001
Normal
N/A
CPT0088630003
Tumor
N/A
CPT0069000003
Tumor
N/A
CPT0088710001
Normal
N/A
CPT0092160003
Tumor
N/A
CPT0006630003
Tumor
N/A
CPT0001260009
Tumor
N/A
CPT0065750003
Tumor
N/A
CPT0065930003
Tumor
N/A
CPT0012770003
Normal
N/A
CPT0012180003
Tumor
N/A
CPT0017410003
Tumor
N/A
CPT0023350003
Tumor
N/A
CPT0075570001
Normal
N/A
CPT0014130001
Normal
N/A
CPT0078510003
Tumor
N/A
CPT0066470004
Tumor
N/A
CPT0065450001
Normal
N/A
CPT0079000001
Normal
N/A
CPT0092800003
Normal
N/A
CPT0006900003
Tumor
N/A
CPT0015910003
Tumor
N/A
CPT0020130001
Normal
N/A
CPT0089480003
Normal
N/A
CPT0007470001
Normal
N/A
CPT0064400001
Normal
N/A
CPT0088920001
Normal
N/A
CPT0092730003
Tumor
N/A
CPT0077110003
Tumor
N/A
CPT0086030003
Tumor
N/A
CPT0025290003
Tumor
N/A
CPT0012550003
Tumor
N/A
CPT0018250001
Normal
N/A
CPT0017450001
Normal
N/A
CPT0077320001
Normal
N/A
CPT0077500001
Normal
N/A
CPT0092310003
Normal
N/A
CPT0079480003
Tumor
N/A
CPT0006530001
Normal
N/A
CPT0065430003
Tumor
N/A
CPT0019160001
Normal
N/A
CPT0081620001
Normal
N/A
CPT0063320003
Tumor
N/A
CPT0078670001
Normal
N/A
CPT0089460004
Tumor
N/A
CPT0007320003
Tumor
N/A
CPT0088690003
Tumor
N/A
CPT0010160003
Tumor
N/A
CPT0014450004
Tumor
N/A
CPT0025920001
Normal
N/A
CPT0076350001
Normal
N/A
CPT0015730003
Tumor
N/A
CPT0025350003
Tumor
N/A
CPT0012370003
Tumor
N/A
CPT0012280003
Tumor
N/A
CPT0009080003
Normal
N/A
CPT0079410003
Tumor
N/A
CPT0075560003
Tumor
N/A
CPT0001230001
Normal
N/A
CPT0079510001
Normal
N/A
CPT0066430001
Normal
N/A
CPT0001540009
Tumor
N/A
CPT0078990003
Tumor
N/A
CPT0065810003
Tumor
N/A
CPT0010120001
Normal
N/A
CPT0086870003
Tumor
N/A
CPT0075170001
Normal
N/A
CPT0000640003
Tumor
N/A
CPT0065870003
Tumor
N/A
CPT0088780001
Normal
N/A
CPT0086970003
Normal
N/A
CPT0079300001
Normal
N/A
CPT0092740003
Normal
N/A
CPT0085670003
Tumor
N/A
CPT0081880003
Tumor
N/A
CPT0013790003
Normal
N/A
CPT0012290003
Normal
N/A
CPT0087050003
Normal
N/A
CPT0009060003
Tumor
N/A
CPT0023690003
Tumor
N/A
CPT0001220008
Tumor
N/A
CPT0088480003
Tumor
N/A
CPT0026420001
Normal
N/A
CPT0079430001
Normal
N/A
CPT0000890001
Normal
N/A
CPT0086370003
Normal
N/A
CPT0025580004
Tumor
N/A
CPT0081990003
Tumor
N/A
CPT0025060001
Normal
N/A
CPT0075130003
Tumor
N/A
CPT0000660001
Normal
N/A
CPT0086820003
Tumor
N/A
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RENAL CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
