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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LEAP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
124.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
587.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
559.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
494.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
492.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
475.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
461.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
434.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
415.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
407.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
383.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
382.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
381.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
380.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
377.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
371.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
365.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
357.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
339.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
339.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
337.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
333.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
320.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
317.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
311.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
307.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
300.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
298.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
297.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
287.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
285.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
283.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
282.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
280.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
277.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
276.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
273.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
273.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
272.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
269.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
266.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
263.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
258.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
258.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
255.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
253.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
250.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
249.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
247.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
240.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
239.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
235.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
231.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
229.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
229.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
229.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
229.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
227.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
222.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
222.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
218.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
215.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
213.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
213.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
212.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
212.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
211.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
207.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
204.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
203.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
202.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
202.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
200.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
199.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
197.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
197.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
197.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
193.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
190.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
189.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
189.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
188.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
187.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
183.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
181.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
179.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
178.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
177.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
173.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
172.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
170.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
166.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
166.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
165.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
165.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
165.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
164.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
164.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
162.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
161.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
161.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
160.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
160.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
160.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
159.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
158.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
157.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
156.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
156.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
156.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
155.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
153.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
152.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
151.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
146.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
145.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
144.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
144.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
142.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
141.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
141.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
141.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
140.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
139.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
138.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
136.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
135.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
134.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
134.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
134.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
133.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
133.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
133.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
131.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
130.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
129.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
129.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
127.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
126.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
126.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
125.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
125.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
124.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
124.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
124.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
122.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
122.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
122.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
118.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
117.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
116.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
115.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
114.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
114.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
114.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
113.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
113.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
112.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
112.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
110.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
110.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
110.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
108.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
108.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
108.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
108.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
107.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
106.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
106.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
105.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
105.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
105.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
103.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
102.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
102.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
101.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
101.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
98.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
98.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
97.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
97.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
97.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
97.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
96.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
94.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
92.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
90.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
89.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
89.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
89.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
87.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
87.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
86.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
86.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
85.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
84.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
84.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
83.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
83.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
83.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
82.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
80.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
79.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
79.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
79.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
79.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
78.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
78.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
78.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
77.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
77.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
76.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
74.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
73.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
73.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
72.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
72.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
72.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
72.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
70.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
69.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
69.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
68.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
68.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
68.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
68.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
66.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
66.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
65.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
65.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
64.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
62.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
62.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
61.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
60.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
60.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
59.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
59.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
59.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
58.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
58.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
57.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
57.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
55.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
53.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
53.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
51.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
48.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
46.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
46.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
46.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
45.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
45.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
44.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
44.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
43.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
42.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
42.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
40.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
39.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
37.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
36.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
34.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
33.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
31.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
31.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
30.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
30.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
29.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
24.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
24.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
24.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
22.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
21.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
19.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LEAP2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
167.6
Number of samples
231
Samples
Sample
Description
TPM
DO23546
0 years, male, NA, stage:2, alive, 1050 days
637.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
608.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
575.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
530.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
529.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
523.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
509.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
508.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
498.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
489.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
446.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
437.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
432.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
429.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
425.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
420.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
410.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
409.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
404.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
396.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
358.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
357.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
351.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
350.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
348.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
340.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
339.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
335.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
325.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
323.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
322.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
321.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
320.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
317.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
311.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
308.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
307.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
306.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
301.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
297.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
289.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
288.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
288.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
287.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
285.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
284.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
281.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
279.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
271.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
266.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
265.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
264.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
254.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
253.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
247.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
246.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
243.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
243.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
242.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
242.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
241.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
236.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
234.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
230.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
229.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
225.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
224.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
222.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
221.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
219.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
219.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
218.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
213.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
211.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
211.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
200.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
199.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
198.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
196.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
193.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
193.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
191.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
187.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
187.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
187.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
186.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
185.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
184.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
181.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
180.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
180.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
179.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
179.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
177.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
175.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
175.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
170.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
166.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
165.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
164.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
164.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
164.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
162.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
161.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
155.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
149.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
147.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
146.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
144.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
141.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
138.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
137.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
136.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
134.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
134.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
130.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
129.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
129.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
124.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
123.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
121.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
120.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
116.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
115.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
115.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
115.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
115.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
114.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
112.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
110.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
107.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
107.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
107.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
105.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
104.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
104.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
103.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
102.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
102.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
100.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
98.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
98.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
98.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
97.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
97.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
94.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
94.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
89.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
88.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
87.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
87.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
85.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
83.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
83.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
81.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
80.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
78.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
74.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
74.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
74.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
70.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
68.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
66.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
64.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
63.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
62.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
61.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
58.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
56.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
54.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
54.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
49.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
49.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
48.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
48.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
45.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
44.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
42.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
39.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
37.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
32.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
3.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.