HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:6.1 nTPM
HPA Brain:32.6 nTPM
GTEx:6.1 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:38.5 nTPM
Mouse:11.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037802Antibody HPA037803
Glial cells LowMedium
Neuronal cells MediumHigh




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 32.6
Sample id Sample description nTPM
Hippocampus
nTPM: 30.0
1898 Male, age 80, left hemisphere 34.7
2621 Female, age 67, right hemisphere 33.0
1911 Female, age 85, right hemisphere 32.2
2529 Female, age 94, left hemisphere 30.7
2148 Female, age 91, left hemisphere 26.7
1855 Male, age 76, left hemisphere 22.5
Dentate gyrus
nTPM: 31.3
1927 Female, age 91, both hemispheres 39.1
2010 Male, age 76, both hemispheres 33.9
2530 Female, age 94, left hemisphere 33.3
2528 Male, age 74, both hemispheres 27.6
2246 Female, age 85, both hemispheres 27.2
2531 Female, age 67, both hemispheres 26.9
Entorhinal gyrus
nTPM: 23.8
1938 Female, age 85, left hemisphere 32.0
2117 Female, age 91, right hemisphere 27.7
2764 Male, age 80, right hemisphere 22.5
2686 Male, age 75, right hemisphere 21.5
1787 Male, age 76, left hemisphere 19.4
2613 Female, age 94, left hemisphere 19.4
Hippocampus, CA1
nTPM: 32.6
2749 Male, age 80, left hemisphere 51.5
2045 Male, age 76, both hemispheres 29.3
1873 Female, age 85, both hemispheres 28.7
2527 Male, age 74, both hemispheres 27.8
2082 Female, age 91, right hemisphere 25.5
Hippocampus, CA2
nTPM: 29.8
1963 Male, age 80, left hemisphere 39.0
1892 Male, age 76, both hemispheres 31.9
2249 Male, age 74, both hemispheres 30.5
2437 Female, age 94, left hemisphere 29.7
2113 Female, age 91, right hemisphere 26.1
1940 Female, age 85, left hemisphere 21.9
Hippocampus, CA3
nTPM: 30.5
2137 Male, age 80, left hemisphere 41.1
1867 Male, age 76, both hemispheres 32.0
1891 Female, age 85, both hemispheres 30.9
2436 Male, age 74, both hemispheres 28.8
2861 Female, age 67, both hemispheres 25.6
2620 Female, age 94, left hemisphere 24.3
Parahippocampal cortex
nTPM: 25.1
2018 Male, age 76, both hemispheres 30.0
1990 Female, age 91, right hemisphere 28.7
1850 Male, age 80, both hemispheres 28.6
1933 Female, age 85, both hemispheres 28.2
2245 Female, age 91, both hemispheres 25.6
2532 Female, age 72, left hemisphere 25.3
2250 Female, age 67, right hemisphere 23.1
2692 Male, age 74, both hemispheres 22.8
2693 Female, age 94, both hemispheres 22.3
2622 Female, age 67, right hemisphere 16.5
Perirhinal gyrus
nTPM: 26.1
1847 Female, age 91, left hemisphere 29.1
1841 Female, age 85, right hemisphere 28.2
1794 Male, age 80, right hemisphere 25.9
2521 Female, age 94, right hemisphere 25.3
2848 Male, age 76, right hemisphere 22.2
Subiculum
nTPM: 30.3
2438 Female, age 94, left hemisphere 41.3
2042 Male, age 76, both hemispheres 33.3
1977 Female, age 85, both hemispheres 32.2
1901 Male, age 80, both hemispheres 29.6
2729 Female, age 91, right hemisphere 24.5
2619 Male, age 74, both hemispheres 20.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 6.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 6.1
Samples: 197

Max nTPM: 12.4
Min nTPM: 2.1
Std nTPM: 1.8
Median nTPM: 6.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 12.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 12.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 11.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 11.1
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 10.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 10.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 10.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 10.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 9.9
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 9.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 9.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.8
FF:10169-103B7 60 years, female 57.1
FF:10153-102I9 76 years, female 54.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 38.5
Pig sample Sample description nTPM
Subiculum
nTPM: 30.0
Samples: 4

Max nTPM: 31.2
Min nTPM: 28.0
Sample A Female 30.4
Sample B Female 30.4
Sample C Male 28.0
Sample D Male 31.2
Dorsal hippocampus
nTPM: 38.5
Samples: 4

Max nTPM: 45.5
Min nTPM: 30.1
Sample A Female 41.5
Sample B Female 36.8
Sample C Male 45.5
Sample D Male 30.1
Entorhinal cortex
nTPM: 30.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 27.4
Sample A Female 29.4
Sample B Female 34.4
Sample C Male 27.4
Sample D Male 28.8
Ventral hippocampus
nTPM: 32.4
Samples: 4

Max nTPM: 38.8
Min nTPM: 23.3
Sample A Female 38.8
Sample B Female 29.9
Sample C Male 23.3
Sample D Male 37.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 11.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.2
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.0
Sample A Male 11.2
Sample B Male 11.0
Sample C Female 10.0
Sample D Female 12.7
Hippocampal formation
nTPM: 10.5
Samples: 4

Max nTPM: 12.0
Min nTPM: 9.3
Sample A Male 9.3
Sample B Male 12.0
Sample C Female 11.4
Sample D Female 9.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69407791 Antisense, RP_050414_02_D05, Mouse strain C57BL/6J (56 days, male) 3.8

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