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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CASP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
31.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
28.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
18.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CASP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.7
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
50.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
34.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
30.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
28.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
26.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
24.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
24.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
23.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
22.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
15.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
15.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
727
Tumor
1.7
363
Tumor
1.1
957
Tumor
0.9
161
Tumor
0.9
413
Tumor
0.8
125
Tumor
0.8
285
Tumor
0.8
463
Tumor
0.8
617
Tumor
0.8
661
Tumor
0.7
923
Tumor
0.7
724
Normal
0.7
953
Tumor
0.6
1043
Tumor
0.6
355
Tumor
0.6
427
Tumor
0.6
147
Tumor
0.6
211
Tumor
0.6
271
Tumor
0.5
385
Tumor
0.5
523
Tumor
0.5
113
Tumor
0.5
917
Tumor
0.5
331
Tumor
0.5
1031
Tumor
0.5
851
Tumor
0.5
641
Tumor
0.4
921
Tumor
0.4
341
Tumor
0.4
223
Tumor
0.4
695
Tumor
0.4
537
Tumor
0.4
517
Tumor
0.4
423
Tumor
0.4
983
Tumor
0.4
1013
Tumor
0.4
1025
Tumor
0.4
313
Tumor
0.4
1015
Tumor
0.3
1027
Tumor
0.3
663
Tumor
0.3
671
Tumor
0.3
965
Tumor
0.3
553
Tumor
0.3
141
Tumor
0.3
817
Tumor
0.3
283
Tumor
0.3
434
Normal
0.3
393
Tumor
0.3
375
Tumor
0.3
535
Tumor
0.2
737
Tumor
0.2
966
Normal
0.2
865
Tumor
0.2
343
Tumor
0.2
367
Tumor
0.2
925
Tumor
0.2
514
Normal
0.2
955
Tumor
0.2
435
Tumor
0.2
387
Tumor
0.2
221
Tumor
0.2
471
Tumor
0.2
422
Normal
0.2
424
Normal
0.2
357
Tumor
0.2
518
Normal
0.2
943
Tumor
0.2
951
Tumor
0.2
914
Normal
0.2
647
Tumor
0.2
414
Normal
0.2
967
Tumor
0.1
391
Tumor
0.1
358
Normal
0.1
212
Normal
0.1
137
Tumor
0.1
126
Normal
0.1
432
Normal
0.1
714
Normal
0.1
111
Normal
0.1
557
Tumor
0.1
353
Tumor
0.1
975
Tumor
0.1
881
Tumor
0.1
467
Tumor
0.1
411
Tumor
0.1
362
Normal
0.1
516
Normal
0.1
445
Tumor
0.1
567
Tumor
0.1
395
Tumor
0.1
272
Normal
0.1
533
Tumor
0.1
188
Normal
0.1
444
Normal
0.1
262
Normal
0.1
114
Normal
0.1
877
Tumor
0.1
421
Tumor
0.1
786
Normal
0.1
327
Tumor
0.1
128
Normal
0.1
473
Tumor
0.1
525
Tumor
0.1
861
Tumor
0.1
361
Tumor
0.1
913
Tumor
0.1
464
Normal
0.1
721
Tumor
0.1
564
Normal
0.1
722
Normal
0.1
956
Normal
0.0
351
Tumor
0.0
456
Normal
0.0
911
Tumor
0.0
497
Tumor
0.0
568
Normal
0.0
492
Normal
0.0
267
Tumor
0.0
873
Tumor
0.0
554
Normal
0.0
686
Normal
0.0
482
Normal
0.0
136
Normal
0.0
487
Tumor
0.0
916
Normal
0.0
412
Normal
0.0
814
Normal
0.0
366
Normal
0.0
416
Normal
0.0
344
Normal
0.0
187
Tumor
0.0
662
Normal
0.0
728
Normal
0.0
446
Normal
0.0
124
Normal
0.0
376
Normal
0.0
447
Tumor
0.0
755
Tumor
0.0
232
Normal
0.0
883
Tumor
0.0
138
Normal
0.0
756
Normal
0.0
135
Tumor
0.0
545
Tumor
0.0
314
Normal
0.0
277
Tumor
0.0
213
Tumor
0.0
524
Normal
0.0
195
Tumor
0.0
715
Tumor
0.0
455
Tumor
0.0
526
Normal
0.0
697
Tumor
0.0
978
Normal
0.0
536
Normal
0.0
926
Normal
0.0
352
Normal
0.0
258
Normal
0.0
342
Normal
0.0
452
Normal
-0.1
738
Normal
-0.1
571
Tumor
-0.1
716
Normal
-0.1
618
Normal
-0.1
185
Tumor
-0.1
778
Normal
-0.1
484
Normal
-0.1
172
Normal
-0.1
261
Tumor
-0.1
365
Tumor
-0.1
813
Tumor
-0.1
162
Normal
-0.1
354
Normal
-0.1
698
Normal
-0.1
494
Normal
-0.1
461
Tumor
-0.1
745
Tumor
-0.1
884
Normal
-0.1
852
Normal
-0.1
415
Tumor
-0.1
472
Normal
-0.1
696
Normal
-0.1
912
Normal
-0.1
858
Normal
-0.1
981
Tumor
-0.1
648
Normal
-0.1
723
Tumor
-0.1
257
Tumor
-0.1
148
Normal
-0.1
574
Normal
-0.1
217
Tumor
-0.1
368
Normal
-0.1
474
Normal
-0.1
311
Tumor
-0.1
938
Normal
-0.1
171
Tumor
-0.1
944
Normal
-0.1
616
Normal
-0.1
1016
Normal
-0.1
132
Normal
-0.1
145
Tumor
-0.1
742
Normal
-0.1
642
Normal
-0.1
131
Tumor
-0.1
386
Normal
-0.1
863
Tumor
-0.1
127
Tumor
-0.1
868
Normal
-0.1
214
Normal
-0.1
328
Normal
-0.1
123
Tumor
-0.1
1021
Tumor
-0.1
451
Tumor
-0.1
968
Normal
-0.1
436
Normal
-0.1
563
Tumor
-0.1
468
Normal
-0.1
824
Normal
-0.1
186
Normal
-0.1
816
Normal
-0.1
493
Tumor
-0.2
713
Tumor
-0.2
746
Normal
-0.2
466
Normal
-0.2
685
Tumor
-0.2
268
Normal
-0.2
428
Normal
-0.2
952
Normal
-0.2
635
Tumor
-0.2
628
Normal
-0.2
573
Tumor
-0.2
196
Normal
-0.2
513
Tumor
-0.2
924
Normal
-0.2
528
Normal
-0.2
878
Normal
-0.2
741
Tumor
-0.2
191
Tumor
-0.2
1042
Normal
-0.2
874
Normal
-0.2
356
Normal
-0.2
963
Tumor
-0.2
384
Normal
-0.2
477
Tumor
-0.2
224
Normal
-0.2
915
Tumor
-0.2
312
Normal
-0.2
1045
Tumor
-0.2
286
Normal
-0.2
558
Normal
-0.2
866
Normal
-0.2
298
Normal
-0.2
222
Normal
-0.2
918
Normal
-0.2
1041
Tumor
-0.2
478
Normal
-0.2
297
Tumor
-0.2
498
Normal
-0.2
572
Normal
-0.2
666
Normal
-0.2
744
Normal
-0.2
284
Normal
-0.2
146
Normal
-0.2
882
Normal
-0.2
546
Normal
-0.2
864
Normal
-0.2
1046
Normal
-0.2
862
Normal
-0.2
1028
Normal
-0.2
534
Normal
-0.2
785
Tumor
-0.2
332
Normal
-0.2
112
Tumor
-0.2
426
Normal
-0.2
984
Normal
-0.2
388
Normal
-0.2
396
Normal
-0.2
857
Tumor
-0.2
491
Tumor
-0.2
636
Normal
-0.3
488
Normal
-0.3
394
Normal
-0.3
937
Tumor
-0.3
743
Tumor
-0.3
231
Tumor
-0.3
1022
Normal
-0.3
433
Tumor
-0.3
227
Tumor
-0.3
538
Normal
-0.3
465
Tumor
-0.3
1044
Normal
-0.3
142
Normal
-0.3
664
Normal
-0.3
383
Tumor
-0.3
515
Tumor
-0.3
627
Tumor
-0.3
228
Normal
-0.3
672
Normal
-0.3
922
Normal
-0.3
982
Normal
-0.3
364
Normal
-0.3
976
Normal
-0.3
192
Normal
-0.3
1014
Normal
-0.3
1026
Normal
-0.3
462
Normal
-0.3
815
Tumor
-0.3
425
Tumor
-0.3
218
Normal
-0.3
448
Normal
-0.3
392
Normal
-0.3
818
Normal
-0.3
977
Tumor
-0.4
527
Tumor
-0.4
867
Tumor
-0.4
777
Tumor
-0.4
615
Tumor
-0.4
483
Tumor
-0.4
481
Tumor
-0.4
278
Normal
-0.4
431
Tumor
-0.4
954
Normal
-0.4
823
Tumor
-0.4
443
Tumor
-0.5
964
Normal
-0.5
1032
Normal
-0.5
958
Normal
-0.5
665
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.