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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR41 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
22.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
21.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
5.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR41 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
13.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
6.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
5.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
161
Tumor
1.5
351
Tumor
1.0
661
Tumor
0.9
953
Tumor
0.8
1013
Tumor
0.8
473
Tumor
0.8
145
Tumor
0.8
147
Tumor
0.8
965
Tumor
0.8
148
Normal
0.7
186
Normal
0.6
211
Tumor
0.6
491
Tumor
0.6
162
Normal
0.6
261
Tumor
0.6
724
Normal
0.6
553
Tumor
0.5
172
Normal
0.5
187
Tumor
0.5
138
Normal
0.5
135
Tumor
0.5
721
Tumor
0.5
696
Normal
0.5
188
Normal
0.5
716
Normal
0.4
141
Tumor
0.4
727
Tumor
0.4
685
Tumor
0.4
171
Tumor
0.4
533
Tumor
0.4
877
Tumor
0.4
722
Normal
0.4
714
Normal
0.4
123
Tumor
0.4
513
Tumor
0.4
363
Tumor
0.4
132
Normal
0.4
915
Tumor
0.4
421
Tumor
0.4
686
Normal
0.4
427
Tumor
0.4
923
Tumor
0.4
911
Tumor
0.4
415
Tumor
0.3
777
Tumor
0.3
497
Tumor
0.3
713
Tumor
0.3
314
Normal
0.3
353
Tumor
0.3
283
Tumor
0.3
1045
Tumor
0.3
957
Tumor
0.3
1031
Tumor
0.3
142
Normal
0.3
355
Tumor
0.3
285
Tumor
0.3
635
Tumor
0.2
981
Tumor
0.2
146
Normal
0.2
455
Tumor
0.2
313
Tumor
0.2
665
Tumor
0.2
185
Tumor
0.2
627
Tumor
0.2
463
Tumor
0.2
428
Normal
0.2
914
Normal
0.2
977
Tumor
0.2
262
Normal
0.2
695
Tumor
0.2
554
Normal
0.2
221
Tumor
0.2
478
Normal
0.2
617
Tumor
0.2
943
Tumor
0.2
921
Tumor
0.2
357
Tumor
0.2
434
Normal
0.2
615
Tumor
0.2
136
Normal
0.2
978
Normal
0.2
332
Normal
0.2
1046
Normal
0.2
975
Tumor
0.2
481
Tumor
0.2
527
Tumor
0.2
861
Tumor
0.2
278
Normal
0.2
411
Tumor
0.2
737
Tumor
0.2
715
Tumor
0.2
1041
Tumor
0.1
385
Tumor
0.1
444
Normal
0.1
298
Normal
0.1
223
Tumor
0.1
212
Normal
0.1
487
Tumor
0.1
412
Normal
0.1
863
Tumor
0.1
1027
Tumor
0.1
525
Tumor
0.1
728
Normal
0.1
213
Tumor
0.1
918
Normal
0.1
416
Normal
0.1
446
Normal
0.1
641
Tumor
0.1
364
Normal
0.1
755
Tumor
0.1
482
Normal
0.1
451
Tumor
0.1
698
Normal
0.1
358
Normal
0.1
432
Normal
0.1
1028
Normal
0.1
867
Tumor
0.1
137
Tumor
0.1
257
Tumor
0.1
328
Normal
0.1
862
Normal
0.1
528
Normal
0.1
917
Tumor
0.1
535
Tumor
0.1
312
Normal
0.1
433
Tumor
0.1
534
Normal
0.1
498
Normal
0.1
468
Normal
0.1
536
Normal
0.1
558
Normal
0.1
523
Tumor
0.1
435
Tumor
0.1
268
Normal
0.0
967
Tumor
0.0
352
Normal
0.0
964
Normal
0.0
663
Tumor
0.0
494
Normal
0.0
271
Tumor
0.0
422
Normal
0.0
426
Normal
0.0
514
Normal
0.0
474
Normal
0.0
647
Tumor
0.0
955
Tumor
0.0
571
Tumor
0.0
471
Tumor
0.0
354
Normal
0.0
868
Normal
0.0
127
Tumor
0.0
742
Normal
0.0
738
Normal
0.0
1044
Normal
0.0
466
Normal
0.0
331
Tumor
0.0
128
Normal
0.0
814
Normal
0.0
524
Normal
0.0
414
Normal
0.0
125
Tumor
0.0
956
Normal
0.0
356
Normal
0.0
286
Normal
0.0
231
Tumor
0.0
131
Tumor
0.0
195
Tumor
0.0
436
Normal
0.0
311
Tumor
0.0
881
Tumor
0.0
467
Tumor
0.0
952
Normal
0.0
745
Tumor
0.0
616
Normal
0.0
723
Tumor
0.0
284
Normal
0.0
516
Normal
0.0
272
Normal
0.0
368
Normal
0.0
386
Normal
0.0
448
Normal
0.0
966
Normal
0.0
1014
Normal
0.0
546
Normal
0.0
365
Tumor
0.0
232
Normal
0.0
488
Normal
0.0
447
Tumor
0.0
423
Tumor
0.0
492
Normal
-0.1
375
Tumor
-0.1
666
Normal
-0.1
664
Normal
-0.1
431
Tumor
-0.1
217
Tumor
-0.1
573
Tumor
-0.1
1043
Tumor
-0.1
267
Tumor
-0.1
982
Normal
-0.1
741
Tumor
-0.1
361
Tumor
-0.1
461
Tumor
-0.1
424
Normal
-0.1
1016
Normal
-0.1
111
Normal
-0.1
944
Normal
-0.1
672
Normal
-0.1
224
Normal
-0.1
462
Normal
-0.1
813
Tumor
-0.1
628
Normal
-0.1
662
Normal
-0.1
526
Normal
-0.1
393
Tumor
-0.1
366
Normal
-0.1
922
Normal
-0.1
968
Normal
-0.1
568
Normal
-0.1
538
Normal
-0.1
545
Tumor
-0.1
648
Normal
-0.1
445
Tumor
-0.1
954
Normal
-0.1
484
Normal
-0.1
396
Normal
-0.1
951
Tumor
-0.1
258
Normal
-0.1
517
Tumor
-0.1
341
Tumor
-0.1
493
Tumor
-0.1
394
Normal
-0.1
1022
Normal
-0.1
344
Normal
-0.1
1026
Normal
-0.1
697
Tumor
-0.1
362
Normal
-0.1
191
Tumor
-0.1
878
Normal
-0.1
342
Normal
-0.1
383
Tumor
-0.1
392
Normal
-0.1
464
Normal
-0.1
443
Tumor
-0.1
1015
Tumor
-0.2
858
Normal
-0.2
297
Tumor
-0.2
636
Normal
-0.2
456
Normal
-0.2
937
Tumor
-0.2
564
Normal
-0.2
518
Normal
-0.2
452
Normal
-0.2
913
Tumor
-0.2
327
Tumor
-0.2
384
Normal
-0.2
924
Normal
-0.2
222
Normal
-0.2
465
Tumor
-0.2
388
Normal
-0.2
472
Normal
-0.2
976
Normal
-0.2
744
Normal
-0.2
756
Normal
-0.2
984
Normal
-0.2
227
Tumor
-0.2
413
Tumor
-0.2
938
Normal
-0.2
343
Tumor
-0.2
873
Tumor
-0.2
958
Normal
-0.2
864
Normal
-0.2
114
Normal
-0.2
126
Normal
-0.2
124
Normal
-0.2
574
Normal
-0.2
882
Normal
-0.2
537
Tumor
-0.2
671
Tumor
-0.2
1042
Normal
-0.2
618
Normal
-0.2
214
Normal
-0.2
196
Normal
-0.2
1025
Tumor
-0.3
477
Tumor
-0.3
1021
Tumor
-0.3
916
Normal
-0.3
391
Tumor
-0.3
883
Tumor
-0.3
857
Tumor
-0.3
983
Tumor
-0.3
387
Tumor
-0.3
567
Tumor
-0.3
228
Normal
-0.3
113
Tumor
-0.3
572
Normal
-0.3
912
Normal
-0.3
642
Normal
-0.3
192
Normal
-0.3
926
Normal
-0.3
746
Normal
-0.3
866
Normal
-0.3
376
Normal
-0.3
1032
Normal
-0.3
786
Normal
-0.3
851
Tumor
-0.3
818
Normal
-0.3
824
Normal
-0.3
817
Tumor
-0.3
277
Tumor
-0.3
557
Tumor
-0.4
112
Tumor
-0.4
778
Normal
-0.4
884
Normal
-0.4
874
Normal
-0.4
816
Normal
-0.4
563
Tumor
-0.4
963
Tumor
-0.4
823
Tumor
-0.4
218
Normal
-0.4
367
Tumor
-0.4
743
Tumor
-0.4
483
Tumor
-0.5
515
Tumor
-0.5
395
Tumor
-0.5
852
Normal
-0.5
815
Tumor
-0.6
865
Tumor
-0.6
785
Tumor
-0.6
425
Tumor
-0.7
925
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
