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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRRC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
39.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
38.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
37.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
30.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
30.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
30.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
30.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
28.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
26.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
26.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
24.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
23.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
22.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
21.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
21.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
21.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
20.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
18.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
15.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
11.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRRC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.7
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
32.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
28.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
27.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
25.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
24.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
16.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
14.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
617
Tumor
1.0
527
Tumor
0.9
383
Tumor
0.8
353
Tumor
0.8
533
Tumor
0.7
913
Tumor
0.7
525
Tumor
0.7
745
Tumor
0.7
145
Tumor
0.6
823
Tumor
0.6
557
Tumor
0.6
123
Tumor
0.6
327
Tumor
0.5
223
Tumor
0.5
863
Tumor
0.5
713
Tumor
0.5
471
Tumor
0.5
427
Tumor
0.5
727
Tumor
0.5
1027
Tumor
0.4
1045
Tumor
0.4
135
Tumor
0.4
665
Tumor
0.4
873
Tumor
0.4
1021
Tumor
0.4
923
Tumor
0.4
1013
Tumor
0.4
113
Tumor
0.4
743
Tumor
0.4
777
Tumor
0.4
911
Tumor
0.4
925
Tumor
0.4
161
Tumor
0.4
147
Tumor
0.3
487
Tumor
0.3
721
Tumor
0.3
187
Tumor
0.3
755
Tumor
0.3
641
Tumor
0.3
724
Normal
0.3
481
Tumor
0.3
523
Tumor
0.3
571
Tumor
0.3
951
Tumor
0.3
285
Tumor
0.3
647
Tumor
0.3
813
Tumor
0.3
857
Tumor
0.3
257
Tumor
0.3
191
Tumor
0.3
213
Tumor
0.3
497
Tumor
0.3
573
Tumor
0.3
467
Tumor
0.3
431
Tumor
0.2
131
Tumor
0.2
171
Tumor
0.2
443
Tumor
0.2
227
Tumor
0.2
413
Tumor
0.2
865
Tumor
0.2
615
Tumor
0.2
983
Tumor
0.2
937
Tumor
0.2
473
Tumor
0.2
221
Tumor
0.2
141
Tumor
0.2
461
Tumor
0.2
1025
Tumor
0.2
375
Tumor
0.2
261
Tumor
0.2
112
Tumor
0.2
137
Tumor
0.2
1041
Tumor
0.2
421
Tumor
0.1
127
Tumor
0.1
965
Tumor
0.1
415
Tumor
0.1
451
Tumor
0.1
357
Tumor
0.1
635
Tumor
0.1
786
Normal
0.1
447
Tumor
0.1
267
Tumor
0.1
393
Tumor
0.1
435
Tumor
0.1
517
Tumor
0.1
411
Tumor
0.1
537
Tumor
0.1
697
Tumor
0.1
868
Normal
0.1
368
Normal
0.1
545
Tumor
0.1
494
Normal
0.1
195
Tumor
0.1
685
Tumor
0.1
1026
Normal
0.1
395
Tumor
0.1
1044
Normal
0.1
363
Tumor
0.1
1031
Tumor
0.1
814
Normal
0.1
328
Normal
0.1
883
Tumor
0.1
114
Normal
0.1
526
Normal
0.1
277
Tumor
0.1
663
Tumor
0.1
365
Tumor
0.1
553
Tumor
0.1
1032
Normal
0.1
817
Tumor
0.1
955
Tumor
0.0
111
Normal
0.0
627
Tumor
0.0
628
Normal
0.0
376
Normal
0.0
212
Normal
0.0
391
Tumor
0.0
271
Tumor
0.0
493
Tumor
0.0
185
Tumor
0.0
366
Normal
0.0
714
Normal
0.0
218
Normal
0.0
416
Normal
0.0
484
Normal
0.0
385
Tumor
0.0
564
Normal
0.0
558
Normal
0.0
984
Normal
0.0
756
Normal
0.0
958
Normal
0.0
952
Normal
0.0
884
Normal
0.0
1014
Normal
0.0
867
Tumor
0.0
1042
Normal
0.0
482
Normal
0.0
824
Normal
0.0
217
Tumor
0.0
864
Normal
0.0
567
Tumor
0.0
514
Normal
0.0
1022
Normal
0.0
918
Normal
0.0
963
Tumor
0.0
722
Normal
0.0
944
Normal
0.0
362
Normal
0.0
535
Tumor
0.0
488
Normal
0.0
968
Normal
0.0
228
Normal
0.0
912
Normal
0.0
818
Normal
0.0
436
Normal
0.0
922
Normal
0.0
478
Normal
0.0
126
Normal
0.0
563
Tumor
0.0
214
Normal
0.0
128
Normal
0.0
356
Normal
0.0
618
Normal
0.0
778
Normal
0.0
364
Normal
0.0
964
Normal
0.0
361
Tumor
0.0
286
Normal
0.0
696
Normal
0.0
938
Normal
0.0
462
Normal
0.0
977
Tumor
0.0
528
Normal
0.0
568
Normal
0.0
423
Tumor
0.0
616
Normal
0.0
851
Tumor
0.0
914
Normal
0.0
341
Tumor
0.0
926
Normal
0.0
728
Normal
0.0
858
Normal
0.0
978
Normal
0.0
956
Normal
0.0
331
Tumor
0.0
981
Tumor
0.0
136
Normal
0.0
862
Normal
0.0
124
Normal
0.0
387
Tumor
-0.1
572
Normal
-0.1
636
Normal
-0.1
351
Tumor
-0.1
472
Normal
-0.1
446
Normal
-0.1
498
Normal
-0.1
695
Tumor
-0.1
424
Normal
-0.1
524
Normal
-0.1
1016
Normal
-0.1
723
Tumor
-0.1
414
Normal
-0.1
664
Normal
-0.1
1046
Normal
-0.1
392
Normal
-0.1
738
Normal
-0.1
483
Tumor
-0.1
916
Normal
-0.1
355
Tumor
-0.1
515
Tumor
-0.1
874
Normal
-0.1
816
Normal
-0.1
297
Tumor
-0.1
866
Normal
-0.1
1043
Tumor
-0.1
976
Normal
-0.1
642
Normal
-0.1
188
Normal
-0.1
426
Normal
-0.1
716
Normal
-0.1
518
Normal
-0.1
284
Normal
-0.1
852
Normal
-0.1
148
Normal
-0.1
746
Normal
-0.1
982
Normal
-0.1
384
Normal
-0.1
396
Normal
-0.1
262
Normal
-0.1
162
Normal
-0.1
142
Normal
-0.1
433
Tumor
-0.1
466
Normal
-0.1
534
Normal
-0.1
132
Normal
-0.1
412
Normal
-0.1
882
Normal
-0.1
513
Tumor
-0.1
1028
Normal
-0.1
422
Normal
-0.1
546
Normal
-0.1
474
Normal
-0.1
222
Normal
-0.1
358
Normal
-0.1
662
Normal
-0.1
672
Normal
-0.1
554
Normal
-0.1
666
Normal
-0.1
924
Normal
-0.1
648
Normal
-0.1
737
Tumor
-0.1
352
Normal
-0.1
686
Normal
-0.1
463
Tumor
-0.1
428
Normal
-0.1
966
Normal
-0.1
477
Tumor
-0.1
344
Normal
-0.1
434
Normal
-0.1
448
Normal
-0.1
492
Normal
-0.1
314
Normal
-0.1
258
Normal
-0.2
877
Tumor
-0.2
192
Normal
-0.2
196
Normal
-0.2
975
Tumor
-0.2
138
Normal
-0.2
211
Tumor
-0.2
455
Tumor
-0.2
311
Tumor
-0.2
388
Normal
-0.2
456
Normal
-0.2
742
Normal
-0.2
878
Normal
-0.2
231
Tumor
-0.2
881
Tumor
-0.2
917
Tumor
-0.2
464
Normal
-0.2
224
Normal
-0.2
432
Normal
-0.2
425
Tumor
-0.2
536
Normal
-0.2
268
Normal
-0.2
172
Normal
-0.2
312
Normal
-0.2
272
Normal
-0.2
967
Tumor
-0.2
921
Tumor
-0.2
354
Normal
-0.2
954
Normal
-0.2
232
Normal
-0.2
146
Normal
-0.2
468
Normal
-0.2
715
Tumor
-0.2
394
Normal
-0.2
386
Normal
-0.2
574
Normal
-0.2
698
Normal
-0.2
186
Normal
-0.2
861
Tumor
-0.2
452
Normal
-0.3
953
Tumor
-0.3
516
Normal
-0.3
298
Normal
-0.3
815
Tumor
-0.3
445
Tumor
-0.3
332
Normal
-0.3
915
Tumor
-0.3
491
Tumor
-0.3
957
Tumor
-0.3
283
Tumor
-0.3
278
Normal
-0.3
465
Tumor
-0.3
1015
Tumor
-0.3
367
Tumor
-0.3
444
Normal
-0.3
785
Tumor
-0.4
661
Tumor
-0.4
741
Tumor
-0.4
343
Tumor
-0.4
538
Normal
-0.4
125
Tumor
-0.4
342
Normal
-0.4
744
Normal
-0.4
943
Tumor
-0.5
313
Tumor
-0.6
671
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
