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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMBL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
201.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
175.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
165.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
165.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
149.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
136.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
127.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
126.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
121.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
119.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
118.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
118.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
117.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
113.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
108.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
108.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
107.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
103.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
101.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
97.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
95.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
94.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
94.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
94.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
93.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
92.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
91.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
90.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
90.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
89.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
88.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
87.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
87.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
85.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
85.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
85.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
83.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
83.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
83.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
83.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
81.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
75.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
75.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
75.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
74.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
74.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
73.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
72.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
72.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
71.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
71.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
71.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
71.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
71.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
71.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
70.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
70.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
69.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
68.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
68.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
66.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
66.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
65.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
64.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
64.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
64.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
63.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
62.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
62.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
61.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
60.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
60.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
60.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
60.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
60.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
60.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
59.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
59.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
59.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
58.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
58.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
58.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
57.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
56.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
56.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
56.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
56.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
55.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
54.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
54.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
51.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
51.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
51.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
50.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
50.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
50.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
50.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
49.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
48.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
48.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
48.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
48.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
47.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
47.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
47.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
46.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
46.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
46.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
45.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
45.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
44.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
43.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
42.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
40.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
40.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
40.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
40.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
37.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
36.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
36.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
36.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
36.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
35.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
35.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
35.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
33.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
32.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
32.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
31.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
31.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
31.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
30.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
30.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
30.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
28.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
26.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
25.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
25.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
24.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
24.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
23.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
22.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
22.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
21.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
20.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
20.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
19.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
19.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
16.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
16.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
15.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
14.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
11.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CMBL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.1
Number of samples
231
Samples
Sample
Description
TPM
DO23509
0 years, male, NA, stage:3, dead, 780 days
230.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
171.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
170.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
158.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
155.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
153.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
144.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
142.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
139.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
123.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
119.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
111.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
101.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
100.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
98.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
96.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
94.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
92.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
87.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
87.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
85.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
85.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
85.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
82.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
81.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
80.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
79.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
77.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
77.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
76.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
76.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
76.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
74.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
69.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
67.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
66.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
66.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
65.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
64.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
62.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
62.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
62.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
61.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
61.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
60.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
58.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
57.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
55.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
54.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
53.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
53.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
53.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
52.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
52.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
51.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
50.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
49.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
49.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
48.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
47.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
46.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
45.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
45.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
45.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
44.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
44.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
43.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
43.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
43.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
42.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
42.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
41.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
41.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
41.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
40.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
38.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
37.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
36.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
36.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
35.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
34.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
30.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
30.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
26.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
24.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
20.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
436
Normal
1.2
756
Normal
1.2
484
Normal
1.2
862
Normal
1.1
342
Normal
1.1
858
Normal
1.1
698
Normal
1.0
1027
Tumor
1.0
742
Normal
1.0
746
Normal
1.0
1026
Normal
1.0
162
Normal
1.0
222
Normal
1.0
824
Normal
1.0
882
Normal
1.0
964
Normal
1.0
518
Normal
1.0
938
Normal
0.9
472
Normal
0.9
1046
Normal
0.9
465
Tumor
0.9
723
Tumor
0.9
714
Normal
0.9
298
Normal
0.9
462
Normal
0.9
196
Normal
0.9
922
Normal
0.9
172
Normal
0.9
128
Normal
0.9
818
Normal
0.8
466
Normal
0.8
546
Normal
0.8
738
Normal
0.8
944
Normal
0.8
132
Normal
0.8
616
Normal
0.8
186
Normal
0.8
648
Normal
0.8
568
Normal
0.8
394
Normal
0.8
1016
Normal
0.8
664
Normal
0.8
448
Normal
0.7
358
Normal
0.7
423
Tumor
0.7
926
Normal
0.7
258
Normal
0.7
952
Normal
0.7
716
Normal
0.7
482
Normal
0.7
982
Normal
0.7
452
Normal
0.7
1022
Normal
0.7
111
Normal
0.7
534
Normal
0.7
426
Normal
0.7
356
Normal
0.7
618
Normal
0.7
432
Normal
0.7
744
Normal
0.7
864
Normal
0.7
376
Normal
0.7
412
Normal
0.7
1032
Normal
0.7
728
Normal
0.6
786
Normal
0.6
314
Normal
0.6
488
Normal
0.6
662
Normal
0.6
866
Normal
0.6
464
Normal
0.6
696
Normal
0.6
232
Normal
0.6
422
Normal
0.6
924
Normal
0.6
414
Normal
0.6
148
Normal
0.6
666
Normal
0.6
428
Normal
0.6
474
Normal
0.5
141
Tumor
0.5
564
Normal
0.5
572
Normal
0.5
628
Normal
0.5
816
Normal
0.5
515
Tumor
0.5
868
Normal
0.5
456
Normal
0.5
332
Normal
0.5
1014
Normal
0.5
278
Normal
0.5
114
Normal
0.5
914
Normal
0.5
446
Normal
0.5
136
Normal
0.5
956
Normal
0.5
494
Normal
0.5
867
Tumor
0.5
918
Normal
0.5
267
Tumor
0.5
212
Normal
0.5
615
Tumor
0.5
366
Normal
0.5
272
Normal
0.5
286
Normal
0.5
142
Normal
0.5
388
Normal
0.5
354
Normal
0.4
362
Normal
0.4
554
Normal
0.4
146
Normal
0.4
636
Normal
0.4
878
Normal
0.4
396
Normal
0.4
912
Normal
0.4
722
Normal
0.4
138
Normal
0.4
424
Normal
0.4
874
Normal
0.4
328
Normal
0.4
976
Normal
0.4
1042
Normal
0.4
884
Normal
0.4
911
Tumor
0.3
364
Normal
0.3
392
Normal
0.3
312
Normal
0.3
516
Normal
0.3
958
Normal
0.3
915
Tumor
0.3
686
Normal
0.3
966
Normal
0.3
257
Tumor
0.3
161
Tumor
0.3
218
Normal
0.3
558
Normal
0.3
528
Normal
0.3
214
Normal
0.3
857
Tumor
0.2
416
Normal
0.2
642
Normal
0.2
574
Normal
0.2
195
Tumor
0.2
137
Tumor
0.2
352
Normal
0.2
978
Normal
0.2
955
Tumor
0.2
262
Normal
0.2
968
Normal
0.2
386
Normal
0.2
513
Tumor
0.2
228
Normal
0.2
741
Tumor
0.2
514
Normal
0.2
1044
Normal
0.2
483
Tumor
0.2
526
Normal
0.2
953
Tumor
0.1
533
Tumor
0.1
368
Normal
0.1
571
Tumor
0.1
852
Normal
0.1
327
Tumor
0.1
353
Tumor
0.1
468
Normal
0.1
778
Normal
0.1
427
Tumor
0.1
344
Normal
0.1
434
Normal
0.1
865
Tumor
0.1
126
Normal
0.0
1028
Normal
0.0
913
Tumor
0.0
375
Tumor
0.0
663
Tumor
0.0
916
Normal
0.0
984
Normal
0.0
261
Tumor
-0.1
461
Tumor
-0.1
954
Normal
-0.1
1045
Tumor
-0.1
361
Tumor
-0.1
873
Tumor
-0.1
672
Normal
-0.2
627
Tumor
-0.2
493
Tumor
-0.2
755
Tumor
-0.2
284
Normal
-0.2
188
Normal
-0.2
981
Tumor
-0.2
124
Normal
-0.2
481
Tumor
-0.2
127
Tumor
-0.3
478
Normal
-0.3
925
Tumor
-0.3
523
Tumor
-0.3
1041
Tumor
-0.3
617
Tumor
-0.3
365
Tumor
-0.3
192
Normal
-0.4
415
Tumor
-0.4
937
Tumor
-0.4
224
Normal
-0.4
113
Tumor
-0.5
492
Normal
-0.5
357
Tumor
-0.5
477
Tumor
-0.5
1013
Tumor
-0.5
451
Tumor
-0.5
384
Normal
-0.5
785
Tumor
-0.5
861
Tumor
-0.6
268
Normal
-0.6
145
Tumor
-0.6
695
Tumor
-0.6
185
Tumor
-0.6
217
Tumor
-0.6
171
Tumor
-0.6
563
Tumor
-0.6
421
Tumor
-0.6
123
Tumor
-0.7
557
Tumor
-0.7
433
Tumor
-0.7
923
Tumor
-0.7
863
Tumor
-0.7
444
Normal
-0.7
538
Normal
-0.7
498
Normal
-0.7
525
Tumor
-0.7
977
Tumor
-0.7
1021
Tumor
-0.8
363
Tumor
-0.8
647
Tumor
-0.8
411
Tumor
-0.8
745
Tumor
-0.8
635
Tumor
-0.9
147
Tumor
-0.9
435
Tumor
-0.9
524
Normal
-0.9
883
Tumor
-0.9
685
Tumor
-1.0
355
Tumor
-1.0
431
Tumor
-1.0
313
Tumor
-1.0
963
Tumor
-1.0
823
Tumor
-1.0
737
Tumor
-1.0
191
Tumor
-1.0
917
Tumor
-1.0
537
Tumor
-1.0
311
Tumor
-1.0
715
Tumor
-1.0
1025
Tumor
-1.0
536
Normal
-1.1
387
Tumor
-1.1
463
Tumor
-1.1
1015
Tumor
-1.1
921
Tumor
-1.1
471
Tumor
-1.1
473
Tumor
-1.1
527
Tumor
-1.1
727
Tumor
-1.1
1043
Tumor
-1.1
187
Tumor
-1.1
341
Tumor
-1.1
957
Tumor
-1.1
491
Tumor
-1.1
517
Tumor
-1.1
553
Tumor
-1.2
277
Tumor
-1.2
297
Tumor
-1.2
777
Tumor
-1.2
227
Tumor
-1.2
721
Tumor
-1.2
393
Tumor
-1.2
112
Tumor
-1.2
231
Tumor
-1.2
487
Tumor
-1.2
443
Tumor
-1.3
445
Tumor
-1.3
813
Tumor
-1.3
567
Tumor
-1.3
455
Tumor
-1.3
425
Tumor
-1.3
641
Tumor
-1.3
391
Tumor
-1.3
213
Tumor
-1.3
943
Tumor
-1.4
814
Normal
-1.4
131
Tumor
-1.4
447
Tumor
-1.4
665
Tumor
-1.4
413
Tumor
-1.4
467
Tumor
-1.5
881
Tumor
-1.5
545
Tumor
-1.5
367
Tumor
-1.5
383
Tumor
-1.5
125
Tumor
-1.5
223
Tumor
-1.6
271
Tumor
-1.6
697
Tumor
-1.6
395
Tumor
-1.6
221
Tumor
-1.6
965
Tumor
-1.6
135
Tumor
-1.7
573
Tumor
-1.7
951
Tumor
-1.7
983
Tumor
-1.8
877
Tumor
-1.8
351
Tumor
-1.8
497
Tumor
-1.8
671
Tumor
-1.9
343
Tumor
-1.9
851
Tumor
-1.9
331
Tumor
-1.9
1031
Tumor
-2.0
815
Tumor
-2.0
975
Tumor
-2.0
743
Tumor
-2.0
285
Tumor
-2.2
211
Tumor
-2.2
713
Tumor
-2.2
283
Tumor
-2.2
385
Tumor
-2.3
967
Tumor
-2.3
817
Tumor
-2.4
724
Normal
-2.4
535
Tumor
-2.6
661
Tumor
-2.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
