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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STARD4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
17.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
4.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
3.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
3.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
2.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
1.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
127
Tumor
1.3
358
Normal
1.2
112
Tumor
1.2
342
Normal
1.1
128
Normal
1.1
368
Normal
1.1
113
Tumor
1.0
111
Normal
1.0
456
Normal
1.0
354
Normal
0.9
446
Normal
0.9
331
Tumor
0.9
366
Normal
0.9
361
Tumor
0.9
344
Normal
0.8
436
Normal
0.8
452
Normal
0.8
376
Normal
0.8
123
Tumor
0.8
278
Normal
0.8
722
Normal
0.7
357
Tumor
0.7
352
Normal
0.7
466
Normal
0.7
432
Normal
0.7
413
Tumor
0.7
723
Tumor
0.7
356
Normal
0.7
463
Tumor
0.7
874
Normal
0.6
482
Normal
0.6
434
Normal
0.6
464
Normal
0.6
362
Normal
0.6
864
Normal
0.6
341
Tumor
0.6
1044
Normal
0.6
1041
Tumor
0.6
388
Normal
0.6
126
Normal
0.6
114
Normal
0.5
272
Normal
0.5
258
Normal
0.5
672
Normal
0.5
365
Tumor
0.5
716
Normal
0.5
384
Normal
0.5
394
Normal
0.5
414
Normal
0.5
1046
Normal
0.5
375
Tumor
0.5
1032
Normal
0.5
448
Normal
0.5
468
Normal
0.5
617
Tumor
0.5
367
Tumor
0.5
862
Normal
0.5
618
Normal
0.5
232
Normal
0.5
125
Tumor
0.4
514
Normal
0.4
462
Normal
0.4
714
Normal
0.4
187
Tumor
0.4
465
Tumor
0.4
558
Normal
0.4
616
Normal
0.4
332
Normal
0.4
172
Normal
0.4
698
Normal
0.4
124
Normal
0.4
391
Tumor
0.4
964
Normal
0.4
286
Normal
0.4
435
Tumor
0.4
186
Normal
0.4
627
Tumor
0.4
574
Normal
0.4
298
Normal
0.4
135
Tumor
0.4
536
Normal
0.3
421
Tumor
0.3
742
Normal
0.3
314
Normal
0.3
416
Normal
0.3
162
Normal
0.3
428
Normal
0.3
976
Normal
0.3
444
Normal
0.3
262
Normal
0.3
664
Normal
0.3
424
Normal
0.3
636
Normal
0.3
422
Normal
0.3
1043
Tumor
0.3
396
Normal
0.3
517
Tumor
0.3
1026
Normal
0.3
615
Tumor
0.3
967
Tumor
0.3
648
Normal
0.3
327
Tumor
0.3
535
Tumor
0.3
267
Tumor
0.3
297
Tumor
0.3
386
Normal
0.3
353
Tumor
0.2
445
Tumor
0.2
148
Normal
0.2
387
Tumor
0.2
212
Normal
0.2
467
Tumor
0.2
738
Normal
0.2
744
Normal
0.2
868
Normal
0.2
426
Normal
0.2
877
Tumor
0.2
526
Normal
0.2
474
Normal
0.2
472
Normal
0.2
914
Normal
0.2
451
Tumor
0.2
628
Normal
0.2
642
Normal
0.2
882
Normal
0.2
415
Tumor
0.2
728
Normal
0.2
884
Normal
0.2
268
Normal
0.1
311
Tumor
0.1
696
Normal
0.1
227
Tumor
0.1
392
Normal
0.1
641
Tumor
0.1
697
Tumor
0.1
277
Tumor
0.1
957
Tumor
0.1
284
Normal
0.1
966
Normal
0.1
228
Normal
0.1
494
Normal
0.1
564
Normal
0.1
431
Tumor
0.1
863
Tumor
0.1
443
Tumor
0.1
188
Normal
0.1
488
Normal
0.1
958
Normal
0.1
411
Tumor
0.1
455
Tumor
0.0
328
Normal
0.0
571
Tumor
0.0
313
Tumor
0.0
171
Tumor
0.0
873
Tumor
0.0
423
Tumor
0.0
477
Tumor
0.0
261
Tumor
0.0
1027
Tumor
0.0
383
Tumor
0.0
141
Tumor
0.0
363
Tumor
0.0
231
Tumor
0.0
145
Tumor
0.0
161
Tumor
0.0
478
Normal
0.0
666
Normal
0.0
912
Normal
0.0
861
Tumor
0.0
516
Normal
0.0
433
Tumor
0.0
724
Normal
0.0
662
Normal
0.0
878
Normal
0.0
1022
Normal
0.0
271
Tumor
0.0
132
Normal
0.0
1042
Normal
0.0
663
Tumor
-0.1
136
Normal
-0.1
484
Normal
-0.1
727
Tumor
-0.1
185
Tumor
-0.1
568
Normal
-0.1
686
Normal
-0.1
518
Normal
-0.1
563
Tumor
-0.1
671
Tumor
-0.1
1028
Normal
-0.1
224
Normal
-0.1
312
Normal
-0.1
515
Tumor
-0.1
918
Normal
-0.1
223
Tumor
-0.1
471
Tumor
-0.2
968
Normal
-0.2
138
Normal
-0.2
364
Normal
-0.2
721
Tumor
-0.2
481
Tumor
-0.2
395
Tumor
-0.2
487
Tumor
-0.2
883
Tumor
-0.2
911
Tumor
-0.2
147
Tumor
-0.2
965
Tumor
-0.2
866
Normal
-0.2
393
Tumor
-0.2
412
Normal
-0.3
665
Tumor
-0.3
285
Tumor
-0.3
926
Normal
-0.3
1045
Tumor
-0.3
975
Tumor
-0.3
867
Tumor
-0.3
283
Tumor
-0.3
498
Normal
-0.3
461
Tumor
-0.3
497
Tumor
-0.3
524
Normal
-0.3
921
Tumor
-0.3
257
Tumor
-0.3
447
Tumor
-0.4
913
Tumor
-0.4
713
Tumor
-0.4
923
Tumor
-0.4
715
Tumor
-0.4
647
Tumor
-0.4
131
Tumor
-0.4
351
Tumor
-0.4
685
Tumor
-0.4
922
Normal
-0.4
427
Tumor
-0.4
493
Tumor
-0.4
925
Tumor
-0.4
525
Tumor
-0.5
492
Normal
-0.5
635
Tumor
-0.5
385
Tumor
-0.5
661
Tumor
-0.5
743
Tumor
-0.5
146
Normal
-0.5
513
Tumor
-0.5
924
Normal
-0.6
881
Tumor
-0.6
137
Tumor
-0.6
425
Tumor
-0.6
737
Tumor
-0.6
695
Tumor
-0.6
572
Normal
-0.7
1025
Tumor
-0.7
963
Tumor
-0.7
343
Tumor
-0.7
523
Tumor
-0.7
483
Tumor
-0.7
865
Tumor
-0.8
916
Normal
-0.8
915
Tumor
-0.9
741
Tumor
-0.9
1021
Tumor
-0.9
355
Tumor
-0.9
491
Tumor
-1.0
211
Tumor
-1.2
567
Tumor
-1.3
917
Tumor
-1.4
473
Tumor
-1.5
1031
Tumor
-1.8
557
Tumor
-1.9
573
Tumor
-1.9
142
Normal
-3.4
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
858
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
745
Tumor
N/A
746
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
527
Tumor
N/A
528
Normal
N/A
533
Tumor
N/A
534
Normal
N/A
777
Tumor
N/A
778
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
545
Tumor
N/A
546
Normal
N/A
553
Tumor
N/A
554
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
