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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A46 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
12.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
11.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
8.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
6.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC25A46 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
231
Samples
Sample
Description
TPM
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
20.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
20.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
19.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
615
Tumor
0.8
571
Tumor
0.8
1041
Tumor
0.8
627
Tumor
0.8
353
Tumor
0.8
865
Tumor
0.6
1027
Tumor
0.6
261
Tumor
0.6
145
Tumor
0.5
411
Tumor
0.5
616
Normal
0.5
635
Tumor
0.5
513
Tumor
0.5
1045
Tumor
0.5
636
Normal
0.5
465
Tumor
0.5
642
Normal
0.5
365
Tumor
0.5
553
Tumor
0.4
423
Tumor
0.4
686
Normal
0.4
464
Normal
0.4
137
Tumor
0.4
111
Normal
0.4
426
Normal
0.4
714
Normal
0.4
414
Normal
0.4
361
Tumor
0.4
491
Tumor
0.4
722
Normal
0.4
824
Normal
0.4
534
Normal
0.4
867
Tumor
0.4
628
Normal
0.4
196
Normal
0.4
915
Tumor
0.4
428
Normal
0.4
648
Normal
0.4
746
Normal
0.4
443
Tumor
0.4
1032
Normal
0.4
128
Normal
0.4
696
Normal
0.4
422
Normal
0.4
944
Normal
0.4
123
Tumor
0.3
981
Tumor
0.3
466
Normal
0.3
572
Normal
0.3
161
Tumor
0.3
568
Normal
0.3
744
Normal
0.3
618
Normal
0.3
462
Normal
0.3
424
Normal
0.3
564
Normal
0.3
862
Normal
0.3
922
Normal
0.3
716
Normal
0.3
446
Normal
0.3
148
Normal
0.3
557
Tumor
0.3
481
Tumor
0.3
344
Normal
0.3
526
Normal
0.3
214
Normal
0.3
474
Normal
0.3
132
Normal
0.3
728
Normal
0.3
114
Normal
0.3
858
Normal
0.3
484
Normal
0.3
952
Normal
0.3
136
Normal
0.3
723
Tumor
0.3
468
Normal
0.3
431
Tumor
0.3
448
Normal
0.3
938
Normal
0.3
472
Normal
0.3
665
Tumor
0.3
1013
Tumor
0.3
126
Normal
0.3
384
Normal
0.3
1026
Normal
0.3
436
Normal
0.3
954
Normal
0.3
574
Normal
0.3
412
Normal
0.3
868
Normal
0.3
368
Normal
0.3
914
Normal
0.3
383
Tumor
0.3
376
Normal
0.3
494
Normal
0.3
818
Normal
0.3
358
Normal
0.3
328
Normal
0.3
352
Normal
0.2
356
Normal
0.2
745
Tumor
0.2
127
Tumor
0.2
232
Normal
0.2
222
Normal
0.2
362
Normal
0.2
786
Normal
0.2
866
Normal
0.2
662
Normal
0.2
388
Normal
0.2
1022
Normal
0.2
396
Normal
0.2
482
Normal
0.2
258
Normal
0.2
742
Normal
0.2
162
Normal
0.2
223
Tumor
0.2
672
Normal
0.2
968
Normal
0.2
715
Tumor
0.2
456
Normal
0.2
342
Normal
0.2
488
Normal
0.2
124
Normal
0.2
452
Normal
0.2
172
Normal
0.2
558
Normal
0.2
286
Normal
0.2
911
Tumor
0.2
218
Normal
0.2
392
Normal
0.2
142
Normal
0.2
926
Normal
0.2
415
Tumor
0.2
278
Normal
0.2
964
Normal
0.2
1042
Normal
0.2
354
Normal
0.2
912
Normal
0.2
864
Normal
0.2
1014
Normal
0.2
816
Normal
0.2
738
Normal
0.2
231
Tumor
0.2
364
Normal
0.2
478
Normal
0.2
641
Tumor
0.2
138
Normal
0.2
664
Normal
0.2
955
Tumor
0.2
863
Tumor
0.2
874
Normal
0.2
298
Normal
0.2
227
Tumor
0.2
394
Normal
0.2
756
Normal
0.2
1028
Normal
0.2
546
Normal
0.2
958
Normal
0.2
416
Normal
0.2
228
Normal
0.1
685
Tumor
0.1
698
Normal
0.1
778
Normal
0.1
386
Normal
0.1
514
Normal
0.1
1046
Normal
0.1
421
Tumor
0.1
984
Normal
0.1
432
Normal
0.1
188
Normal
0.1
451
Tumor
0.1
554
Normal
0.1
473
Tumor
0.1
976
Normal
0.1
444
Normal
0.1
617
Tumor
0.1
187
Tumor
0.1
113
Tumor
0.1
982
Normal
0.1
666
Normal
0.1
186
Normal
0.1
923
Tumor
0.1
257
Tumor
0.1
518
Normal
0.1
924
Normal
0.1
467
Tumor
0.1
332
Normal
0.1
956
Normal
0.1
884
Normal
0.1
528
Normal
0.1
224
Normal
0.1
695
Tumor
0.1
268
Normal
0.1
873
Tumor
0.1
1044
Normal
0.1
966
Normal
0.1
916
Normal
0.1
882
Normal
0.1
563
Tumor
0.1
212
Normal
0.0
461
Tumor
0.0
852
Normal
0.0
918
Normal
0.0
393
Tumor
0.0
524
Normal
0.0
191
Tumor
0.0
925
Tumor
0.0
741
Tumor
0.0
1016
Normal
0.0
878
Normal
0.0
777
Tumor
0.0
284
Normal
0.0
498
Normal
0.0
737
Tumor
0.0
357
Tumor
0.0
314
Normal
0.0
978
Normal
0.0
492
Normal
0.0
487
Tumor
0.0
477
Tumor
0.0
262
Normal
0.0
516
Normal
0.0
217
Tumor
0.0
1025
Tumor
0.0
861
Tumor
0.0
538
Normal
0.0
471
Tumor
0.0
135
Tumor
-0.1
312
Normal
-0.1
515
Tumor
-0.1
195
Tumor
-0.1
366
Normal
-0.1
146
Normal
-0.1
536
Normal
-0.1
1043
Tumor
-0.1
327
Tumor
-0.1
663
Tumor
-0.1
171
Tumor
-0.1
267
Tumor
-0.1
721
Tumor
-0.1
525
Tumor
-0.1
435
Tumor
-0.1
112
Tumor
-0.1
192
Normal
-0.1
913
Tumor
-0.1
517
Tumor
-0.1
755
Tumor
-0.1
395
Tumor
-0.1
1031
Tumor
-0.1
434
Normal
-0.1
977
Tumor
-0.1
785
Tumor
-0.1
221
Tumor
-0.2
147
Tumor
-0.2
272
Normal
-0.2
363
Tumor
-0.2
341
Tumor
-0.2
497
Tumor
-0.2
433
Tumor
-0.2
527
Tumor
-0.2
533
Tumor
-0.2
567
Tumor
-0.2
213
Tumor
-0.2
141
Tumor
-0.2
483
Tumor
-0.2
953
Tumor
-0.2
713
Tumor
-0.2
823
Tumor
-0.2
185
Tumor
-0.2
857
Tumor
-0.2
937
Tumor
-0.2
535
Tumor
-0.2
455
Tumor
-0.2
813
Tumor
-0.3
724
Normal
-0.3
523
Tumor
-0.3
427
Tumor
-0.3
425
Tumor
-0.3
493
Tumor
-0.3
814
Normal
-0.4
727
Tumor
-0.4
851
Tumor
-0.4
883
Tumor
-0.4
917
Tumor
-0.4
573
Tumor
-0.4
343
Tumor
-0.4
313
Tumor
-0.4
1015
Tumor
-0.4
447
Tumor
-0.4
963
Tumor
-0.4
967
Tumor
-0.4
391
Tumor
-0.4
375
Tumor
-0.4
965
Tumor
-0.4
957
Tumor
-0.4
921
Tumor
-0.4
697
Tumor
-0.4
331
Tumor
-0.4
355
Tumor
-0.5
277
Tumor
-0.5
297
Tumor
-0.5
815
Tumor
-0.5
387
Tumor
-0.5
951
Tumor
-0.5
131
Tumor
-0.5
943
Tumor
-0.5
975
Tumor
-0.5
285
Tumor
-0.5
463
Tumor
-0.5
311
Tumor
-0.6
881
Tumor
-0.6
351
Tumor
-0.6
211
Tumor
-0.6
647
Tumor
-0.6
743
Tumor
-0.6
983
Tumor
-0.6
385
Tumor
-0.6
877
Tumor
-0.6
413
Tumor
-0.7
445
Tumor
-0.7
545
Tumor
-0.7
537
Tumor
-0.7
125
Tumor
-0.7
271
Tumor
-0.7
817
Tumor
-0.9
367
Tumor
-1.0
1021
Tumor
-1.0
283
Tumor
-1.1
671
Tumor
-1.2
661
Tumor
-1.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
