MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.4 nTPM
HPA Brain:45.3 nTPM
GTEx:23.4 nTPM
FANTOM5:41.8 Scaled Tags Per Million
Pig:51.5 nTPM
Mouse:17.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.8
2666 Male, age 74, left hemisphere 55.6
2019 Male, age 18, unknown 51.1
1830 Male, age 51, unknown 45.2
2411 Female, age 72, unknown 43.3
1833 Male, age 53, unknown 39.1
1870 Female, age 42, unknown 38.6
2828 Female, age 72, unknown 33.5
1827 Male, age 72, unknown 30.5
2219 Male, age 76, both hemispheres 27.4
2586 Male, age 75, left hemisphere 23.6
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 43.9
1828 Male, age 53, unknown 36.6
2047 Male, age 72, unknown 31.0
2016 Female, age 72, unknown 30.5
2298 Female, age 72, unknown 26.5
Inferior colliculus
nTPM: 34.9
1890 Male, age 53, unknown 41.2
2097 Female, age 72, unknown 35.2
1848 Female, age 42, unknown 31.8
2849 Male, age 72, unknown 31.2
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 28.9
2502 Female, age 75, unknown 41.3
1947 Male, age 18, unknown 24.2
1795 Male, age 51, unknown 21.3
Periaquaductal grey, dorsal
nTPM: 27.4
2464 Female, age 72, unknown 34.1
1831 Male, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 23.0
1840 Male, age 53, unknown 20.8
Periaquaductal grey, lateral
nTPM: 26.5
2053 Male, age 18, unknown 29.7
2272 Male, age 74, both hemispheres 26.0
2140 Male, age 76, both hemispheres 23.9
Pretectal area
nTPM: 32.3
2007 Male, age 72, unknown 43.5
2316 Male, age 76, right hemisphere 41.3
1817 Female, age 42, unknown 39.1
1944 Female, age 72, unknown 36.2
1815 Male, age 53, unknown 34.9
1816 Male, age 51, unknown 30.8
2667 Female, age 75, unknown 29.2
2825 Male, age 18, unknown 28.8
2224 Female, age 72, unknown 24.9
2273 Male, age 74, both hemispheres 23.6
2407 Male, age 75, both hemispheres 22.9
Red nucleus
nTPM: 45.3
1821 Female, age 72, unknown 57.2
1865 Male, age 51, unknown 54.6
2823 Male, age 76, right hemisphere 53.3
1954 Female, age 42, unknown 48.1
1904 Male, age 53, unknown 47.1
2785 Male, age 18, unknown 45.2
2769 Male, age 72, unknown 44.7
2588 Male, age 74, left hemisphere 43.8
2227 Male, age 72, unknown 42.9
2503 Female, age 72, unknown 38.4
2584 Male, age 75, left hemisphere 34.9
2725 Female, age 75, unknown 33.9
Substantia nigra
nTPM: 40.8
2665 Male, age 74, both hemispheres 66.1
1889 Female, age 72, unknown 42.4
1941 Male, age 53, unknown 40.8
1851 Male, age 51, unknown 39.7
2241 Male, age 72, unknown 39.7
2409 Female, age 72, unknown 39.3
1916 Female, age 42, unknown 37.2
2590 Female, age 75, unknown 35.9
2699 Male, age 18, unknown 35.3
2583 Male, age 75, right hemisphere 31.3
Superior colliculus
nTPM: 34.1
2587 Male, age 74, left hemisphere 42.6
1895 Male, age 76, right hemisphere 41.5
1913 Female, age 42, unknown 40.9
2087 Female, age 72, unknown 37.1
2668 Female, age 75, unknown 35.8
1839 Male, age 51, unknown 33.6
1995 Male, age 72, unknown 31.6
2261 Male, age 18, unknown 30.7
1796 Male, age 53, unknown 27.3
2664 Male, age 75, both hemispheres 19.9
Ventral tegmental area
nTPM: 36.6
2223 Female, age 72, unknown 48.8
2410 Female, age 72, unknown 37.2
2021 Male, age 53, unknown 35.2
1915 Female, age 42, unknown 33.0
1942 Male, age 51, unknown 32.8
2218 Male, age 76, both hemispheres 32.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 23.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.4
Samples: 139

Max nTPM: 99.1
Min nTPM: 6.9
Std nTPM: 14.9
Median nTPM: 19.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 99.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 96.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 69.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 69.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 65.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 65.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 50.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 48.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 46.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 44.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 42.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 41.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.8
FF:10158-103A5 76 years, female 41.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 51.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.7
Samples: 4

Max nTPM: 72.4
Min nTPM: 31.3
Sample A Female 34.2
Sample B Female 31.3
Sample C Male 36.8
Sample D Male 72.4
Midbrain
nTPM: 51.5
Samples: 4

Max nTPM: 113.9
Min nTPM: 25.7
Sample A Female 113.9
Sample B Female 38.5
Sample C Male 25.7
Sample D Male 27.9
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 34.6
Min nTPM: 20.7
Sample B Female 32.9
Sample C Male 20.7
Sample D Male 34.6
Superior colliculi
nTPM: 31.5
Samples: 4

Max nTPM: 39.6
Min nTPM: 23.4
Sample A Female 25.6
Sample B Female 23.4
Sample C Male 37.2
Sample D Male 39.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.6
Samples: 4

Max nTPM: 18.5
Min nTPM: 16.2
Sample A Male 16.2
Sample B Male 17.9
Sample C Female 17.7
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71487106 Antisense, RP_050913_01_C05, Mouse strain C57BL/6J (56 days, male) 0.0

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