We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
125.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
646.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
586.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
586.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
531.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
528.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
500.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
495.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
489.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
456.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
453.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
449.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
428.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
428.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
419.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
371.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
346.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
339.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
337.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
332.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
307.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
306.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
303.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
302.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
296.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
283.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
277.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
277.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
275.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
274.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
269.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
262.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
261.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
260.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
259.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
257.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
255.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
251.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
251.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
245.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
240.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
222.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
222.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
221.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
220.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
219.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
218.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
209.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
209.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
208.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
207.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
206.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
205.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
205.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
203.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
202.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
201.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
200.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
197.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
196.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
196.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
196.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
196.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
194.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
192.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
192.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
190.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
190.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
187.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
186.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
184.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
184.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
184.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
184.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
183.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
182.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
181.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
181.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
178.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
177.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
175.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
175.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
174.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
171.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
171.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
170.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
170.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
166.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
165.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
164.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
161.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
160.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
160.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
159.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
159.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
158.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
155.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
154.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
154.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
152.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
151.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
150.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
146.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
146.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
146.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
145.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
144.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
144.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
144.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
142.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
141.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
138.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
137.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
137.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
137.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
136.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
136.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
136.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
135.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
133.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
133.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
133.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
132.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
132.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
128.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
128.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
128.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
127.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
127.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
126.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
125.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
125.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
123.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
123.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
123.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
122.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
122.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
122.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
122.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
122.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
121.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
121.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
120.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
119.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
118.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
117.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
117.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
116.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
115.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
114.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
114.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
114.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
113.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
113.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
113.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
113.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
112.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
112.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
112.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
110.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
110.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
110.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
108.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
108.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
107.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
106.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
105.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
105.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
103.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
103.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
103.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
102.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
100.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
100.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
98.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
97.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
97.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
97.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
96.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
96.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
96.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
95.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
95.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
95.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
95.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
95.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
94.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
94.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
94.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
94.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
93.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
93.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
92.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
92.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
91.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
91.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
91.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
90.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
90.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
90.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
89.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
89.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
88.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
87.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
87.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
86.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
86.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
86.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
85.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
84.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
83.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
83.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
83.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
82.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
81.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
81.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
81.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
81.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
80.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
80.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
80.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
80.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
79.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
79.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
78.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
77.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
76.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
73.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
73.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
73.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
72.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
70.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
70.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
70.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
69.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
68.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
66.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
65.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
65.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
65.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
64.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
63.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
62.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
62.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
62.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
62.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
62.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
61.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
61.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
60.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
60.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
59.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
59.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
57.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
57.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
57.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
57.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
57.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
57.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
56.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
56.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
55.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
55.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
55.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
54.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
53.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
53.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
52.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
52.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
52.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
51.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
50.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
49.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
49.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
47.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
46.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
45.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
44.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
44.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
44.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
43.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
42.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
42.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
41.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
36.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
36.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
35.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
35.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
32.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
32.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
31.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
30.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
29.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
28.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
28.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
28.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
27.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
25.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
25.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
24.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
21.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA5 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
145.4
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
753.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
674.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
615.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
592.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
552.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
533.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
488.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
478.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
439.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
432.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
395.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
393.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
391.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
375.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
375.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
371.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
371.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
367.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
361.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
343.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
322.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
321.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
311.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
307.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
305.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
304.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
298.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
282.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
277.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
276.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
271.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
269.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
265.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
254.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
252.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
250.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
247.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
245.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
245.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
238.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
236.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
235.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
235.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
232.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
227.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
223.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
215.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
215.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
214.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
213.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
209.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
208.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
207.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
207.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
206.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
204.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
204.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
199.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
199.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
197.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
197.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
191.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
188.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
185.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
185.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
181.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
180.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
179.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
178.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
173.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
172.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
172.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
171.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
163.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
161.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
160.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
158.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
158.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
155.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
155.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
150.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
144.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
143.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
142.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
136.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
135.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
133.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
132.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
132.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
131.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
130.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
130.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
129.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
126.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
126.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
125.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
124.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
124.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
123.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
120.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
119.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
117.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
117.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
117.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
116.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
115.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
115.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
114.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
114.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
113.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
111.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
111.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
110.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
108.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
108.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
107.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
106.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
106.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
104.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
103.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
103.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
102.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
101.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
99.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
98.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
98.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
97.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
97.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
96.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
96.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
95.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
93.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
93.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
93.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
93.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
90.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
88.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
88.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
88.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
87.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
87.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
87.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
86.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
86.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
84.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
82.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
82.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
82.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
80.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
79.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
79.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
79.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
74.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
74.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
73.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
73.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
71.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
70.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
70.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
69.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
68.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
65.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
65.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
64.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
63.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
62.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
61.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
59.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
57.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
56.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
54.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
54.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
54.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
49.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
48.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
45.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
43.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
41.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
40.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
37.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
36.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
34.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
33.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
29.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
26.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
20.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1015
Tumor
0.8
573
Tumor
0.8
917
Tumor
0.7
395
Tumor
0.7
523
Tumor
0.6
421
Tumor
0.6
545
Tumor
0.6
192
Normal
0.6
311
Tumor
0.6
327
Tumor
0.6
187
Tumor
0.6
188
Normal
0.6
223
Tumor
0.6
146
Normal
0.6
297
Tumor
0.6
135
Tumor
0.6
444
Normal
0.5
268
Normal
0.5
563
Tumor
0.5
713
Tumor
0.5
283
Tumor
0.5
126
Normal
0.5
467
Tumor
0.5
363
Tumor
0.5
743
Tumor
0.5
723
Tumor
0.5
285
Tumor
0.5
191
Tumor
0.5
535
Tumor
0.5
724
Normal
0.5
478
Normal
0.5
131
Tumor
0.5
916
Normal
0.4
386
Normal
0.4
487
Tumor
0.4
672
Normal
0.4
952
Normal
0.4
354
Normal
0.4
491
Tumor
0.4
375
Tumor
0.4
262
Normal
0.4
424
Normal
0.4
455
Tumor
0.4
434
Normal
0.4
498
Normal
0.4
884
Normal
0.4
218
Normal
0.3
874
Normal
0.3
343
Tumor
0.3
284
Normal
0.3
312
Normal
0.3
978
Normal
0.3
557
Tumor
0.3
145
Tumor
0.3
1026
Normal
0.3
344
Normal
0.3
224
Normal
0.3
492
Normal
0.3
984
Normal
0.3
141
Tumor
0.3
818
Normal
0.3
852
Normal
0.3
671
Tumor
0.3
185
Tumor
0.3
536
Normal
0.3
1016
Normal
0.3
172
Normal
0.3
923
Tumor
0.3
195
Tumor
0.3
384
Normal
0.3
913
Tumor
0.2
527
Tumor
0.2
1042
Normal
0.2
138
Normal
0.2
362
Normal
0.2
755
Tumor
0.2
924
Normal
0.2
212
Normal
0.2
447
Tumor
0.2
1044
Normal
0.2
1025
Tumor
0.2
564
Normal
0.2
738
Normal
0.2
147
Tumor
0.2
661
Tumor
0.2
516
Normal
0.2
955
Tumor
0.2
528
Normal
0.2
383
Tumor
0.2
353
Tumor
0.2
364
Normal
0.2
538
Normal
0.2
918
Normal
0.2
461
Tumor
0.2
385
Tumor
0.2
662
Normal
0.2
466
Normal
0.2
211
Tumor
0.2
124
Normal
0.2
355
Tumor
0.2
778
Normal
0.2
392
Normal
0.2
558
Normal
0.2
863
Tumor
0.2
111
Normal
0.2
214
Normal
0.2
414
Normal
0.2
721
Tumor
0.2
394
Normal
0.2
756
Normal
0.2
162
Normal
0.2
462
Normal
0.2
366
Normal
0.2
976
Normal
0.2
982
Normal
0.2
786
Normal
0.2
857
Tumor
0.1
628
Normal
0.1
474
Normal
0.1
664
Normal
0.1
958
Normal
0.1
868
Normal
0.1
574
Normal
0.1
137
Tumor
0.1
914
Normal
0.1
314
Normal
0.1
616
Normal
0.1
746
Normal
0.1
396
Normal
0.1
524
Normal
0.1
456
Normal
0.1
514
Normal
0.1
352
Normal
0.1
464
Normal
0.1
716
Normal
0.1
686
Normal
0.1
567
Tumor
0.1
737
Tumor
0.1
715
Tumor
0.1
217
Tumor
0.1
816
Normal
0.1
416
Normal
0.1
432
Normal
0.1
666
Normal
0.1
1046
Normal
0.1
956
Normal
0.1
518
Normal
0.1
968
Normal
0.1
1043
Tumor
0.1
1028
Normal
0.1
391
Tumor
0.1
1022
Normal
0.0
497
Tumor
0.0
922
Normal
0.0
926
Normal
0.0
136
Normal
0.0
663
Tumor
0.0
258
Normal
0.0
537
Tumor
0.0
328
Normal
0.0
817
Tumor
0.0
428
Normal
0.0
257
Tumor
0.0
186
Normal
0.0
881
Tumor
0.0
696
Normal
0.0
332
Normal
0.0
445
Tumor
0.0
722
Normal
0.0
472
Normal
0.0
468
Normal
0.0
422
Normal
0.0
358
Normal
0.0
278
Normal
0.0
482
Normal
0.0
222
Normal
0.0
943
Tumor
0.0
877
Tumor
0.0
272
Normal
0.0
983
Tumor
0.0
427
Tumor
0.0
966
Normal
0.0
526
Normal
0.0
368
Normal
0.0
568
Normal
0.0
228
Normal
0.0
448
Normal
0.0
376
Normal
0.0
954
Normal
0.0
132
Normal
0.0
864
Normal
0.0
741
Tumor
0.0
365
Tumor
0.0
433
Tumor
0.0
742
Normal
-0.1
286
Normal
-0.1
415
Tumor
-0.1
878
Normal
-0.1
642
Normal
-0.1
618
Normal
-0.1
128
Normal
-0.1
446
Normal
-0.1
572
Normal
-0.1
388
Normal
-0.1
728
Normal
-0.1
114
Normal
-0.1
824
Normal
-0.1
1032
Normal
-0.1
912
Normal
-0.1
367
Tumor
-0.1
494
Normal
-0.1
862
Normal
-0.1
426
Normal
-0.1
1014
Normal
-0.1
142
Normal
-0.1
525
Tumor
-0.1
636
Normal
-0.1
744
Normal
-0.1
161
Tumor
-0.1
546
Normal
-0.1
148
Normal
-0.2
231
Tumor
-0.2
213
Tumor
-0.2
883
Tumor
-0.2
697
Tumor
-0.2
412
Normal
-0.2
866
Normal
-0.2
361
Tumor
-0.2
823
Tumor
-0.2
113
Tumor
-0.2
387
Tumor
-0.2
1021
Tumor
-0.2
813
Tumor
-0.2
882
Normal
-0.2
342
Normal
-0.2
925
Tumor
-0.2
436
Normal
-0.2
463
Tumor
-0.2
698
Normal
-0.2
714
Normal
-0.2
356
Normal
-0.2
196
Normal
-0.2
938
Normal
-0.2
858
Normal
-0.2
488
Normal
-0.2
814
Normal
-0.2
127
Tumor
-0.2
232
Normal
-0.2
515
Tumor
-0.2
481
Tumor
-0.3
963
Tumor
-0.3
745
Tumor
-0.3
452
Normal
-0.3
627
Tumor
-0.3
533
Tumor
-0.3
554
Normal
-0.3
331
Tumor
-0.3
423
Tumor
-0.3
944
Normal
-0.3
298
Normal
-0.3
964
Normal
-0.3
477
Tumor
-0.3
785
Tumor
-0.3
1045
Tumor
-0.3
648
Normal
-0.3
277
Tumor
-0.4
517
Tumor
-0.4
617
Tumor
-0.4
393
Tumor
-0.4
271
Tumor
-0.4
975
Tumor
-0.4
957
Tumor
-0.4
873
Tumor
-0.4
1013
Tumor
-0.4
351
Tumor
-0.4
484
Normal
-0.4
977
Tumor
-0.4
443
Tumor
-0.5
483
Tumor
-0.5
615
Tumor
-0.5
341
Tumor
-0.5
1041
Tumor
-0.5
665
Tumor
-0.5
695
Tumor
-0.5
685
Tumor
-0.5
965
Tumor
-0.5
641
Tumor
-0.5
534
Normal
-0.5
261
Tumor
-0.5
861
Tumor
-0.5
867
Tumor
-0.5
647
Tumor
-0.5
413
Tumor
-0.5
967
Tumor
-0.5
451
Tumor
-0.5
125
Tumor
-0.6
953
Tumor
-0.6
1031
Tumor
-0.6
465
Tumor
-0.6
513
Tumor
-0.6
571
Tumor
-0.6
411
Tumor
-0.6
851
Tumor
-0.6
425
Tumor
-0.6
493
Tumor
-0.6
865
Tumor
-0.6
313
Tumor
-0.7
473
Tumor
-0.7
921
Tumor
-0.7
951
Tumor
-0.7
1027
Tumor
-0.7
937
Tumor
-0.7
357
Tumor
-0.7
777
Tumor
-0.7
123
Tumor
-0.8
227
Tumor
-0.8
911
Tumor
-0.8
112
Tumor
-0.8
221
Tumor
-0.9
727
Tumor
-0.9
471
Tumor
-0.9
171
Tumor
-0.9
553
Tumor
-0.9
915
Tumor
-1.0
815
Tumor
-1.1
981
Tumor
-1.2
431
Tumor
-1.2
635
Tumor
-1.3
267
Tumor
-1.4
435
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.