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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
2.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
2.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAD2L1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.1
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
44.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
39.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
23.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
2.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
2.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
2.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
2.1
463
Tumor
1.5
983
Tumor
1.4
743
Tumor
1.3
923
Tumor
1.3
661
Tumor
1.3
351
Tumor
1.2
724
Normal
1.2
967
Tumor
1.2
663
Tumor
1.2
413
Tumor
1.2
487
Tumor
1.2
567
Tumor
1.1
285
Tumor
1.0
951
Tumor
1.0
473
Tumor
1.0
497
Tumor
0.9
523
Tumor
0.9
737
Tumor
0.9
367
Tumor
0.9
817
Tumor
0.9
277
Tumor
0.9
1031
Tumor
0.8
647
Tumor
0.8
727
Tumor
0.8
1013
Tumor
0.8
957
Tumor
0.8
161
Tumor
0.7
112
Tumor
0.7
877
Tumor
0.7
123
Tumor
0.7
535
Tumor
0.7
125
Tumor
0.7
127
Tumor
0.6
573
Tumor
0.6
815
Tumor
0.6
517
Tumor
0.6
814
Normal
0.6
331
Tumor
0.6
283
Tumor
0.6
813
Tumor
0.5
355
Tumor
0.5
447
Tumor
0.5
921
Tumor
0.5
131
Tumor
0.5
267
Tumor
0.5
943
Tumor
0.5
391
Tumor
0.5
1021
Tumor
0.5
755
Tumor
0.5
435
Tumor
0.5
671
Tumor
0.5
213
Tumor
0.5
1015
Tumor
0.5
883
Tumor
0.4
211
Tumor
0.4
467
Tumor
0.4
917
Tumor
0.4
925
Tumor
0.4
862
Normal
0.4
695
Tumor
0.4
713
Tumor
0.4
493
Tumor
0.4
464
Normal
0.4
147
Tumor
0.4
363
Tumor
0.4
425
Tumor
0.4
113
Tumor
0.4
221
Tumor
0.4
385
Tumor
0.4
433
Tumor
0.4
665
Tumor
0.3
141
Tumor
0.3
537
Tumor
0.3
361
Tumor
0.3
465
Tumor
0.3
313
Tumor
0.3
411
Tumor
0.3
697
Tumor
0.3
977
Tumor
0.3
1041
Tumor
0.3
451
Tumor
0.3
1043
Tumor
0.3
341
Tumor
0.3
227
Tumor
0.3
483
Tumor
0.3
525
Tumor
0.2
357
Tumor
0.2
491
Tumor
0.2
431
Tumor
0.2
455
Tumor
0.2
426
Normal
0.2
851
Tumor
0.2
534
Normal
0.2
1025
Tumor
0.2
427
Tumor
0.2
741
Tumor
0.2
937
Tumor
0.2
615
Tumor
0.2
387
Tumor
0.2
375
Tumor
0.1
881
Tumor
0.1
966
Normal
0.1
443
Tumor
0.1
217
Tumor
0.1
857
Tumor
0.1
557
Tumor
0.1
554
Normal
0.1
685
Tumor
0.1
191
Tumor
0.1
171
Tumor
0.1
434
Normal
0.1
777
Tumor
0.1
145
Tumor
0.1
261
Tumor
0.1
383
Tumor
0.1
231
Tumor
0.1
745
Tumor
0.1
785
Tumor
0.1
258
Normal
0.1
135
Tumor
0.1
262
Normal
0.1
715
Tumor
0.0
286
Normal
0.0
445
Tumor
0.0
981
Tumor
0.0
617
Tumor
0.0
311
Tumor
0.0
271
Tumor
0.0
868
Normal
0.0
538
Normal
0.0
393
Tumor
0.0
428
Normal
0.0
571
Tumor
0.0
953
Tumor
0.0
343
Tumor
0.0
527
Tumor
0.0
185
Tumor
0.0
563
Tumor
0.0
365
Tumor
0.0
964
Normal
0.0
186
Normal
0.0
545
Tumor
0.0
172
Normal
0.0
272
Normal
0.0
492
Normal
0.0
354
Normal
-0.1
721
Tumor
-0.1
874
Normal
-0.1
314
Normal
-0.1
224
Normal
-0.1
911
Tumor
-0.1
528
Normal
-0.1
114
Normal
-0.1
195
Tumor
-0.1
866
Normal
-0.1
162
Normal
-0.1
414
Normal
-0.1
187
Tumor
-0.1
786
Normal
-0.1
553
Tumor
-0.1
297
Tumor
-0.1
963
Tumor
-0.1
756
Normal
-0.1
498
Normal
-0.1
864
Normal
-0.1
865
Tumor
-0.1
146
Normal
-0.1
138
Normal
-0.1
148
Normal
-0.1
188
Normal
-0.1
421
Tumor
-0.1
415
Tumor
-0.1
362
Normal
-0.1
913
Tumor
-0.1
132
Normal
-0.1
416
Normal
-0.1
192
Normal
-0.1
124
Normal
-0.2
327
Tumor
-0.2
268
Normal
-0.2
823
Tumor
-0.2
746
Normal
-0.2
386
Normal
-0.2
142
Normal
-0.2
128
Normal
-0.2
722
Normal
-0.2
861
Tumor
-0.2
394
Normal
-0.2
778
Normal
-0.2
471
Tumor
-0.2
352
Normal
-0.2
126
Normal
-0.2
257
Tumor
-0.2
975
Tumor
-0.2
388
Normal
-0.2
232
Normal
-0.2
648
Normal
-0.2
423
Tumor
-0.2
342
Normal
-0.2
424
Normal
-0.2
328
Normal
-0.2
137
Tumor
-0.2
366
Normal
-0.2
867
Tumor
-0.2
915
Tumor
-0.2
494
Normal
-0.2
136
Normal
-0.2
546
Normal
-0.2
468
Normal
-0.2
912
Normal
-0.2
635
Tumor
-0.3
228
Normal
-0.3
714
Normal
-0.3
664
Normal
-0.3
298
Normal
-0.3
1045
Tumor
-0.3
513
Tumor
-0.3
461
Tumor
-0.3
484
Normal
-0.3
376
Normal
-0.3
332
Normal
-0.3
666
Normal
-0.3
716
Normal
-0.3
358
Normal
-0.3
392
Normal
-0.3
223
Tumor
-0.3
384
Normal
-0.3
914
Normal
-0.3
356
Normal
-0.3
396
Normal
-0.3
364
Normal
-0.3
533
Tumor
-0.3
524
Normal
-0.3
422
Normal
-0.3
466
Normal
-0.3
641
Tumor
-0.3
536
Normal
-0.3
412
Normal
-0.3
662
Normal
-0.3
353
Tumor
-0.3
312
Normal
-0.3
873
Tumor
-0.4
958
Normal
-0.4
278
Normal
-0.4
444
Normal
-0.4
481
Tumor
-0.4
344
Normal
-0.4
1027
Tumor
-0.4
686
Normal
-0.4
978
Normal
-0.4
448
Normal
-0.4
368
Normal
-0.4
395
Tumor
-0.4
518
Normal
-0.4
516
Normal
-0.4
284
Normal
-0.4
488
Normal
-0.4
916
Normal
-0.4
456
Normal
-0.4
1044
Normal
-0.4
212
Normal
-0.4
432
Normal
-0.4
976
Normal
-0.4
696
Normal
-0.4
863
Tumor
-0.4
1046
Normal
-0.4
452
Normal
-0.4
698
Normal
-0.5
884
Normal
-0.5
878
Normal
-0.5
477
Tumor
-0.5
984
Normal
-0.5
436
Normal
-0.5
515
Tumor
-0.5
564
Normal
-0.5
968
Normal
-0.5
852
Normal
-0.5
526
Normal
-0.5
728
Normal
-0.5
882
Normal
-0.6
738
Normal
-0.6
214
Normal
-0.6
858
Normal
-0.6
446
Normal
-0.6
572
Normal
-0.6
1016
Normal
-0.6
618
Normal
-0.6
478
Normal
-0.6
111
Normal
-0.6
472
Normal
-0.6
218
Normal
-0.6
744
Normal
-0.6
514
Normal
-0.7
482
Normal
-0.7
627
Tumor
-0.7
558
Normal
-0.7
924
Normal
-0.7
818
Normal
-0.7
222
Normal
-0.7
1028
Normal
-0.7
816
Normal
-0.7
1032
Normal
-0.7
462
Normal
-0.7
1014
Normal
-0.8
1042
Normal
-0.8
196
Normal
-0.8
672
Normal
-0.8
824
Normal
-0.8
982
Normal
-0.8
922
Normal
-0.8
568
Normal
-0.8
628
Normal
-0.8
642
Normal
-0.8
474
Normal
-0.8
636
Normal
-0.8
926
Normal
-0.8
955
Tumor
-0.8
723
Tumor
-0.8
616
Normal
-0.8
574
Normal
-0.9
742
Normal
-0.9
1022
Normal
-0.9
944
Normal
-0.9
1026
Normal
-0.9
918
Normal
-0.9
956
Normal
-1.1
954
Normal
-1.1
938
Normal
-1.1
952
Normal
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
