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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
308.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
269.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
261.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
256.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
252.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
215.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
187.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
186.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
181.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
178.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
175.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
164.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
163.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
162.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
155.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
155.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
152.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
149.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
149.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
141.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
141.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
137.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
137.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
132.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
131.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
130.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
129.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
123.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
116.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
110.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
110.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
107.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
101.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
100.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
99.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
96.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
96.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
95.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
94.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
93.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
91.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
90.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
90.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
89.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
88.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
86.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
85.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
85.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
84.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
84.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
82.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
81.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
81.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
81.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
81.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
80.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
80.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
79.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
78.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
78.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
77.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
75.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
75.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
74.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
73.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
72.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
72.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
70.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
69.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
69.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
66.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
66.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
65.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
63.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
63.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
62.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
62.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
61.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
61.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
60.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
59.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
58.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
58.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
58.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
56.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
56.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
55.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
54.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
54.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
53.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
52.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
52.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
52.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
51.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
50.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
50.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
50.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
48.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
48.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
48.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
47.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
47.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
47.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
46.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
46.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
45.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
45.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
45.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
45.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
45.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
44.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
44.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
43.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
42.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
41.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
41.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
41.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
40.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
40.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
40.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
40.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
40.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
40.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
38.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
38.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
38.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
38.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
38.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
37.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
36.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
36.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
36.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
35.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
35.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
34.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
33.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
33.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
32.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
32.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
32.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
31.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
31.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
30.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
30.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
30.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
29.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
29.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
29.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
29.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
28.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
28.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
28.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
27.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
27.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
27.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
26.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
25.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
24.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
24.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
24.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
24.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
23.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
23.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
22.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
22.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
21.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
20.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
20.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
20.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
20.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
19.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
18.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
18.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
16.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
16.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
15.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
15.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
14.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
14.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
14.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
12.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
11.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HMGB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.4
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
283.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
205.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
191.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
190.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
173.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
152.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
145.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
123.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
122.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
112.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
110.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
109.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
102.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
98.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
96.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
92.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
92.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
92.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
91.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
91.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
91.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
88.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
86.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
86.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
82.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
77.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
75.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
75.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
74.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
73.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
71.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
68.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
67.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
66.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
65.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
64.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
64.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
63.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
63.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
62.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
59.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
58.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
58.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
57.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
56.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
56.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
56.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
56.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
55.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
55.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
52.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
52.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
52.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
51.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
49.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
49.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
48.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
48.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
48.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
47.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
46.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
46.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
45.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
45.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
44.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
44.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
43.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
42.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
41.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
41.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
40.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
39.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
39.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
38.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
37.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
37.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
37.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
36.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
36.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
34.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
34.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
33.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
33.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
31.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
27.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
21.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
17.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.6
497
Tumor
1.3
727
Tumor
1.2
285
Tumor
1.2
917
Tumor
1.1
523
Tumor
1.1
463
Tumor
1.0
211
Tumor
1.0
487
Tumor
1.0
661
Tumor
1.0
695
Tumor
1.0
467
Tumor
1.0
351
Tumor
0.9
953
Tumor
0.9
977
Tumor
0.9
311
Tumor
0.9
131
Tumor
0.9
413
Tumor
0.9
1031
Tumor
0.9
983
Tumor
0.9
161
Tumor
0.9
536
Normal
0.8
923
Tumor
0.8
724
Normal
0.8
951
Tumor
0.8
355
Tumor
0.8
943
Tumor
0.8
385
Tumor
0.8
447
Tumor
0.8
431
Tumor
0.7
865
Tumor
0.7
663
Tumor
0.7
411
Tumor
0.7
445
Tumor
0.6
957
Tumor
0.6
277
Tumor
0.6
963
Tumor
0.6
877
Tumor
0.6
535
Tumor
0.6
192
Normal
0.6
493
Tumor
0.6
455
Tumor
0.6
814
Normal
0.5
647
Tumor
0.5
492
Normal
0.5
141
Tumor
0.5
883
Tumor
0.5
823
Tumor
0.5
478
Normal
0.5
813
Tumor
0.5
425
Tumor
0.5
1013
Tumor
0.5
267
Tumor
0.5
213
Tumor
0.5
815
Tumor
0.5
817
Tumor
0.5
966
Normal
0.5
721
Tumor
0.4
861
Tumor
0.4
297
Tumor
0.4
498
Normal
0.4
524
Normal
0.4
975
Tumor
0.4
881
Tumor
0.4
313
Tumor
0.4
737
Tumor
0.4
785
Tumor
0.4
343
Tumor
0.4
873
Tumor
0.4
357
Tumor
0.4
283
Tumor
0.3
516
Normal
0.3
857
Tumor
0.3
471
Tumor
0.3
538
Normal
0.3
473
Tumor
0.3
537
Tumor
0.3
916
Normal
0.3
185
Tumor
0.3
1021
Tumor
0.3
545
Tumor
0.3
517
Tumor
0.3
224
Normal
0.3
434
Normal
0.3
567
Tumor
0.3
375
Tumor
0.2
415
Tumor
0.2
331
Tumor
0.2
483
Tumor
0.2
427
Tumor
0.2
573
Tumor
0.2
978
Normal
0.2
341
Tumor
0.2
816
Normal
0.2
491
Tumor
0.2
921
Tumor
0.2
367
Tumor
0.2
716
Normal
0.2
1025
Tumor
0.2
112
Tumor
0.2
852
Normal
0.2
741
Tumor
0.2
271
Tumor
0.1
1044
Normal
0.1
715
Tumor
0.1
851
Tumor
0.1
743
Tumor
0.1
984
Normal
0.1
755
Tumor
0.1
635
Tumor
0.1
778
Normal
0.1
444
Normal
0.1
268
Normal
0.1
671
Tumor
0.1
433
Tumor
0.1
686
Normal
0.1
488
Normal
0.1
525
Tumor
0.1
1043
Tumor
0.0
461
Tumor
0.0
958
Normal
0.0
938
Normal
0.0
867
Tumor
0.0
563
Tumor
0.0
383
Tumor
0.0
527
Tumor
0.0
223
Tumor
0.0
967
Tumor
0.0
126
Normal
0.0
685
Tumor
0.0
384
Normal
0.0
878
Normal
0.0
364
Normal
0.0
494
Normal
0.0
363
Tumor
0.0
188
Normal
0.0
481
Tumor
0.0
187
Tumor
0.0
697
Tumor
0.0
212
Normal
0.0
1015
Tumor
-0.1
127
Tumor
-0.1
386
Normal
-0.1
968
Normal
-0.1
976
Normal
-0.1
744
Normal
-0.1
954
Normal
-0.1
146
Normal
-0.1
1014
Normal
-0.1
443
Tumor
-0.1
217
Tumor
-0.1
1032
Normal
-0.1
553
Tumor
-0.1
913
Tumor
-0.1
272
Normal
-0.1
125
Tumor
-0.1
352
Normal
-0.1
918
Normal
-0.1
952
Normal
-0.1
195
Tumor
-0.1
362
Normal
-0.1
926
Normal
-0.1
924
Normal
-0.1
328
Normal
-0.1
387
Tumor
-0.1
465
Tumor
-0.1
884
Normal
-0.1
191
Tumor
-0.1
874
Normal
-0.1
261
Tumor
-0.1
472
Normal
-0.1
312
Normal
-0.1
518
Normal
-0.1
628
Normal
-0.2
1042
Normal
-0.2
1028
Normal
-0.2
925
Tumor
-0.2
423
Tumor
-0.2
882
Normal
-0.2
662
Normal
-0.2
866
Normal
-0.2
262
Normal
-0.2
421
Tumor
-0.2
937
Tumor
-0.2
395
Tumor
-0.2
546
Normal
-0.2
142
Normal
-0.2
171
Tumor
-0.2
332
Normal
-0.2
922
Normal
-0.2
738
Normal
-0.2
135
Tumor
-0.2
818
Normal
-0.2
956
Normal
-0.2
554
Normal
-0.2
1026
Normal
-0.2
344
Normal
-0.2
533
Tumor
-0.2
393
Tumor
-0.3
412
Normal
-0.3
448
Normal
-0.3
284
Normal
-0.3
477
Tumor
-0.3
451
Tumor
-0.3
641
Tumor
-0.3
557
Tumor
-0.3
365
Tumor
-0.3
137
Tumor
-0.3
858
Normal
-0.3
366
Normal
-0.3
944
Normal
-0.3
514
Normal
-0.3
1016
Normal
-0.3
824
Normal
-0.3
484
Normal
-0.3
756
Normal
-0.3
147
Tumor
-0.3
114
Normal
-0.3
474
Normal
-0.3
915
Tumor
-0.3
113
Tumor
-0.3
982
Normal
-0.4
435
Tumor
-0.4
714
Normal
-0.4
361
Tumor
-0.4
1022
Normal
-0.4
696
Normal
-0.4
231
Tumor
-0.4
777
Tumor
-0.4
615
Tumor
-0.4
617
Tumor
-0.4
534
Normal
-0.4
558
Normal
-0.4
713
Tumor
-0.4
698
Normal
-0.4
723
Tumor
-0.4
342
Normal
-0.4
728
Normal
-0.4
1046
Normal
-0.4
456
Normal
-0.4
964
Normal
-0.4
672
Normal
-0.4
863
Tumor
-0.4
138
Normal
-0.4
298
Normal
-0.4
665
Tumor
-0.4
1041
Tumor
-0.4
912
Normal
-0.4
722
Normal
-0.4
572
Normal
-0.4
124
Normal
-0.4
914
Normal
-0.4
1045
Tumor
-0.4
221
Tumor
-0.4
391
Tumor
-0.4
1027
Tumor
-0.4
396
Normal
-0.4
742
Normal
-0.4
515
Tumor
-0.4
786
Normal
-0.4
111
Normal
-0.5
911
Tumor
-0.5
981
Tumor
-0.5
862
Normal
-0.5
466
Normal
-0.5
214
Normal
-0.5
136
Normal
-0.5
446
Normal
-0.5
528
Normal
-0.5
356
Normal
-0.5
416
Normal
-0.5
574
Normal
-0.5
218
Normal
-0.5
864
Normal
-0.5
227
Tumor
-0.5
746
Normal
-0.5
513
Tumor
-0.6
228
Normal
-0.6
392
Normal
-0.6
424
Normal
-0.6
278
Normal
-0.6
664
Normal
-0.6
526
Normal
-0.6
468
Normal
-0.6
482
Normal
-0.6
462
Normal
-0.6
196
Normal
-0.6
128
Normal
-0.6
354
Normal
-0.6
257
Tumor
-0.6
353
Tumor
-0.6
145
Tumor
-0.6
955
Tumor
-0.6
314
Normal
-0.6
358
Normal
-0.7
428
Normal
-0.7
636
Normal
-0.7
148
Normal
-0.7
464
Normal
-0.7
571
Tumor
-0.7
432
Normal
-0.7
394
Normal
-0.7
616
Normal
-0.7
376
Normal
-0.7
868
Normal
-0.7
388
Normal
-0.7
666
Normal
-0.7
232
Normal
-0.7
286
Normal
-0.8
327
Tumor
-0.8
368
Normal
-0.8
422
Normal
-0.8
132
Normal
-0.8
222
Normal
-0.8
564
Normal
-0.8
123
Tumor
-0.8
162
Normal
-0.9
648
Normal
-0.9
568
Normal
-0.9
426
Normal
-0.9
642
Normal
-0.9
452
Normal
-0.9
436
Normal
-0.9
186
Normal
-0.9
414
Normal
-0.9
258
Normal
-0.9
627
Tumor
-1.0
172
Normal
-1.0
618
Normal
-1.0
745
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.