Expression of HMGB2 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

HMGB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 58.39

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

48.1

Number of samples

362

Samples

Sample	Description	TPM
TCGA-BC-A3KG-01A	68 years, female, white, stage:Stage II, alive, 680 days	308.9
TCGA-BC-A10Y-01A	76 years, male, white, stage:'--, dead, 711 days	269.5
TCGA-BC-A8YO-01A	66 years, female, white, stage:Stage IIIC, alive, 562 days	261.4
TCGA-CC-5263-01A	35 years, male, asian, stage:Stage IIIA, dead, 129 days	256.3
TCGA-CC-A5UD-01A	45 years, male, asian, stage:Stage IIIA, dead, 304 days	252.0
TCGA-CC-A3M9-01A	45 years, male, asian, stage:Stage IIIA, dead, 300 days	215.8
TCGA-BC-A216-01A	62 years, female, white, stage:Stage IIIA, alive, 1351 days	187.5
TCGA-DD-A4NE-01A	75 years, female, white, stage:Stage IIIA, dead, 660 days	186.7
TCGA-UB-A7MB-01A	24 years, male, white, stage:Stage II, alive, 601 days	181.0
TCGA-G3-AAV6-01A	53 years, female, white, stage:Stage IIIA, dead, 65 days	178.5
TCGA-G3-AAV7-01A	38 years, male, asian, stage:Stage II, alive, 361 days	175.7
TCGA-DD-AA3A-01A	81 years, female, white, stage:Stage I, dead, 410 days	164.1
TCGA-BC-A217-01A	75 years, female, white, stage:Stage II, dead, 1397 days	163.3
TCGA-G3-A7M9-01A	70 years, male, white, stage:Stage IIIB, dead, 56 days	162.5
TCGA-CC-A1HT-01A	50 years, male, asian, stage:Stage IIIA, dead, 101 days	155.3
TCGA-CC-A7IJ-01A	56 years, male, asian, stage:Stage II, alive, 382 days	155.2
TCGA-ZS-A9CF-01A	64 years, male, white, stage:Stage II, alive, 2412 days	152.9
TCGA-ED-A5KG-01A	60 years, female, asian, stage:Stage II, alive, 854 days	149.9
TCGA-CC-5264-01A	71 years, male, asian, stage:Stage IIIA, dead, 102 days	149.3
TCGA-DD-AACH-01A	69 years, male, asian, stage:Stage II, dead, 195 days	141.9
TCGA-ZP-A9CZ-01A	72 years, male, asian, stage:'--, alive, 706 days	141.9
TCGA-FV-A4ZQ-01A	52 years, male, white, stage:Stage I, alive, 12 days	137.6
TCGA-DD-A4NJ-01A	54 years, female, white, stage:Stage II, alive, 928 days	137.2
TCGA-RG-A7D4-01A	69 years, male, black or african american, stage:Stage II, alive, 1098 days	132.8
TCGA-XR-A8TG-01A	58 years, male, white, stage:Stage I, alive, 898 days	131.4
TCGA-CC-A8HS-01A	18 years, male, asian, stage:Stage IIIC, dead, 300 days	130.8
TCGA-QA-A7B7-01A	48 years, male, black or african american, stage:Stage II, alive, 94 days	129.7
TCGA-CC-A5UE-01A	48 years, male, asian, stage:Stage IIIB, dead, 272 days	123.6
TCGA-G3-A25U-01A	63 years, female, asian, stage:Stage I, alive, 1636 days	116.6
TCGA-UB-AA0U-01A	60 years, male, white, stage:Stage II, alive, 327 days	110.1
TCGA-G3-A7M6-01A	60 years, female, white, stage:Stage I, alive, 632 days	110.1
TCGA-CC-A8HT-01A	74 years, male, asian, stage:Stage IIIA, dead, 140 days	107.6
TCGA-DD-AADD-01A	51 years, male, asian, stage:Stage I, alive, 1231 days	101.3
TCGA-CC-A8HU-01A	39 years, female, asian, stage:Stage IIIA, dead, 344 days	100.7
TCGA-BD-A2L6-01A	69 years, male, white, stage:'--, alive, 1363 days	99.2
TCGA-YA-A8S7-01A	68 years, male, white, stage:Stage IIIA, dead, 412 days	96.9
TCGA-DD-A114-01A	42 years, male, black or african american, stage:Stage II, dead, 1149 days	96.0
TCGA-DD-A1EJ-01A	71 years, female, white, stage:Stage IIIC, dead, 1005 days	95.9
TCGA-DD-A11C-01A	69 years, male, white, stage:Stage I, alive, 662 days	94.6
TCGA-WX-AA44-01A	64 years, female, white, stage:Stage I, alive, 615 days	93.1
TCGA-CC-A3MA-01A	61 years, male, asian, stage:Stage IIIA, dead, 303 days	91.6
TCGA-RC-A7S9-01A	47 years, female, asian, stage:Stage I, alive, 640 days	90.9
TCGA-DD-AAD8-01A	73 years, female, asian, stage:Stage I, alive, 1219 days	90.3
TCGA-ED-A66Y-01A	51 years, female, asian, stage:Stage IIIA, dead, 296 days	89.3
TCGA-DD-AACA-01A	65 years, male, asian, stage:Stage I, alive, 2301 days	88.5
TCGA-DD-AACP-01A	64 years, male, asian, stage:Stage I, alive, 415 days	86.4
TCGA-DD-AADC-01A	53 years, male, asian, stage:Stage I, dead, 425 days	85.4
TCGA-G3-A25Y-01A	52 years, female, asian, stage:Stage I, dead, 452 days	85.0
TCGA-UB-A7MF-01A	56 years, male, white, stage:Stage IIIA, dead, 214 days	84.8
TCGA-FV-A23B-01A	70 years, female, white, stage:Stage II, dead, 1852 days	84.1
TCGA-DD-AAD5-01A	54 years, male, asian, stage:Stage I, alive, 1345 days	82.0
TCGA-DD-AADW-01A	48 years, male, asian, stage:Stage I, alive, 587 days	81.9
TCGA-CC-5260-01A	61 years, female, asian, stage:Stage IIIC, dead, 87 days	81.4
TCGA-G3-A5SJ-01A	59 years, male, white, stage:Stage I, alive, 698 days	81.4
TCGA-DD-AADB-01A	51 years, male, asian, stage:Stage I, alive, 1242 days	81.1
TCGA-CC-A7IG-01A	47 years, male, asian, stage:Stage II, dead, 299 days	80.8
TCGA-DD-AACV-01A	53 years, male, asian, stage:Stage I, alive, 1531 days	80.6
TCGA-RC-A6M6-01A	75 years, male, white, stage:Stage II, alive, 9 days	79.7
TCGA-BC-A10W-01A	50 years, male, asian, stage:'--, dead, 91 days	78.6
TCGA-XR-A8TD-01A	49 years, female, white, stage:Stage IIIB, alive, 1030 days	78.4
TCGA-2Y-A9GS-01A	58 years, male, white, stage:'--, dead, 724 days	78.0
TCGA-CC-A3MB-01A	36 years, male, asian, stage:Stage IIIA, dead, 315 days	77.7
TCGA-DD-AAD6-01A	66 years, male, asian, stage:Stage IIIA, alive, 672 days	75.4
TCGA-K7-AAU7-01A	61 years, male, white, stage:Stage II, alive, 359 days	75.4
TCGA-2Y-A9H2-01A	64 years, female, white, stage:Stage I, alive, 1731 days	75.2
TCGA-DD-A1EL-01A	23 years, male, black or african american, stage:Stage II, dead, 415 days	74.3
TCGA-UB-A7MA-01A	62 years, female, white, stage:Stage II, alive, 848 days	74.2
TCGA-DD-AACL-01A	66 years, female, asian, stage:Stage I, dead, 107 days	73.9
TCGA-CC-A5UC-01A	63 years, male, asian, stage:Stage IIIA, dead, 347 days	72.4
TCGA-G3-AAUZ-01A	48 years, male, stage:Stage I, alive, 480 days	72.2
TCGA-5C-A9VG-01A	58 years, male, white, stage:Stage II, alive, 328 days	70.9
TCGA-G3-A3CH-01A	53 years, male, asian, stage:Stage IIIA, alive, 780 days	69.2
TCGA-G3-A5SI-01A	44 years, male, asian, stage:Stage II, dead, 768 days	69.1
TCGA-CC-A7IE-01A	57 years, male, asian, stage:Stage IIIA, dead, 217 days	66.6
TCGA-2Y-A9GY-01A	64 years, female, white, stage:Stage II, dead, 757 days	66.5
TCGA-BC-A10Q-01A	72 years, female, white, stage:'--, dead, 1135 days	65.0
TCGA-BC-A10Z-01A	62 years, female, white, stage:Stage I, dead, 34 days	64.9
TCGA-EP-A2KA-01A	52 years, female, white, stage:Stage IIIA, dead, 627 days	63.9
TCGA-2Y-A9H0-01A	49 years, male, white, stage:Stage IIIA, alive, 3675 days	63.6
TCGA-ED-A8O6-01A	50 years, female, asian, stage:Stage IIIA, dead, 56 days	63.0
TCGA-BW-A5NO-01A	50 years, male, black or african american, stage:Stage IIIA, alive, 20 days	62.9
TCGA-DD-AACC-01A	61 years, male, asian, stage:Stage I, dead, 1685 days	62.0
TCGA-KR-A7K7-01A	61 years, female, white, stage:Stage II, alive, 951 days	61.7
TCGA-UB-A7MD-01A	67 years, male, black or african american, stage:Stage I, dead, 52 days	61.6
TCGA-DD-A39Y-01A	67 years, male, asian, stage:Stage I, dead, 171 days	60.9
TCGA-DD-A1EF-01A	57 years, female, white, stage:Stage I, dead, 394 days	59.6
TCGA-EP-A2KB-01A	46 years, female, white, stage:Stage I, dead, 596 days	59.5
TCGA-CC-5261-01A	44 years, male, asian, stage:Stage II, dead, 97 days	59.2
TCGA-DD-AACZ-01A	63 years, female, asian, stage:Stage I, dead, 171 days	58.7
TCGA-DD-A4NR-01A	85 years, female, white, stage:Stage I, dead, 9 days	58.5
TCGA-K7-A5RG-01A	66 years, male, black or african american, stage:Stage I, alive, 519 days	58.3
TCGA-G3-A25T-01A	45 years, female, white, stage:Stage IIIA, alive, 1553 days	56.6
TCGA-DD-A3A5-01A	66 years, female, white, stage:Stage III, dead, 3125 days	56.2
TCGA-DD-AAEA-01A	65 years, male, asian, stage:Stage I, alive, 575 days	56.0
TCGA-DD-AACX-01A	66 years, male, asian, stage:Stage II, alive, 170 days	55.8
TCGA-DD-A1EA-01A	68 years, male, asian, stage:Stage II, alive, 2415 days	55.8
TCGA-DD-AAVZ-01A	38 years, male, asian, stage:Stage I, alive, 1900 days	54.9
TCGA-ED-A7PX-01A	48 years, female, asian, stage:Stage II, alive, 6 days	54.1
TCGA-DD-AAEE-01A	55 years, male, asian, stage:Stage I, alive, 810 days	53.6
TCGA-DD-AAD0-01A	73 years, female, asian, stage:Stage I, alive, 137 days	53.1
TCGA-DD-A1EH-01A	23 years, male, white, stage:Stage III, alive, 1495 days	52.4
TCGA-DD-A4NQ-01A	60 years, male, white, stage:Stage II, dead, 373 days	52.1
TCGA-CC-5258-01A	48 years, male, asian, stage:Stage II, dead, 129 days	52.0
TCGA-PD-A5DF-01A	58 years, female, white, stage:Stage IIIB, dead, 639 days	51.9
TCGA-XR-A8TF-01A	74 years, male, white, stage:Stage I, dead, 693 days	50.9
TCGA-GJ-A3OU-01A	59 years, male, white, stage:Stage I, alive, 879 days	50.9
TCGA-FV-A3R2-01A	75 years, male, white, stage:Stage I, dead, 194 days	50.7
TCGA-EP-A3RK-01A	73 years, male, white, stage:Stage IIIA, alive, 363 days	49.5
TCGA-DD-AAE4-01A	49 years, female, asian, stage:Stage I, alive, 608 days	48.6
TCGA-DD-AAVQ-01A	38 years, male, asian, stage:Stage I, alive, 2728 days	48.3
TCGA-DD-A115-01A	53 years, male, white, stage:Stage IIIA, dead, 2542 days	48.1
TCGA-DD-A1EG-01A	76 years, male, white, stage:Stage I, dead, 1372 days	48.0
TCGA-DD-AADN-01A	59 years, male, asian, stage:Stage I, alive, 898 days	47.6
TCGA-DD-A4NN-01A	56 years, female, white, stage:Stage I, dead, 899 days	47.5
TCGA-5C-AAPD-01A	61 years, male, asian, stage:Stage II, alive, 20 days	47.1
TCGA-WQ-A9G7-01A	71 years, female, white, stage:'--, alive, 30 days	46.9
TCGA-MI-A75I-01A	61 years, male, black or african american, stage:'--, alive, 630 days	46.2
TCGA-DD-AACB-01A	74 years, female, asian, stage:Stage I, alive, 2324 days	45.9
TCGA-DD-AACF-01A	68 years, male, asian, stage:Stage I, dead, 365 days	45.5
TCGA-DD-A1EC-01A	20 years, female, white, stage:Stage I, alive, 602 days	45.5
TCGA-DD-AACW-01A	43 years, male, asian, stage:Stage I, alive, 1424 days	45.2
TCGA-DD-A4NA-01A	67 years, female, white, stage:Stage IIIC, alive, 1008 days	45.0
TCGA-CC-A7IK-01A	59 years, male, asian, stage:Stage IIIA, dead, 262 days	44.9
TCGA-DD-AAE6-01A	59 years, female, asian, stage:Stage I, alive, 141 days	44.8
TCGA-DD-A73B-01A	72 years, female, white, stage:Stage I, dead, 283 days	44.6
TCGA-4R-AA8I-01A	66 years, male, white, stage:Stage II, dead, 262 days	44.4
TCGA-FV-A495-01A	51 years, female, white, stage:Stage II, alive, 1 days	44.1
TCGA-2Y-A9H5-01A	59 years, female, white, stage:Stage I, dead, 555 days	43.9
TCGA-DD-AADF-01A	64 years, female, asian, stage:Stage I, dead, 115 days	43.6
TCGA-CC-5262-01A	67 years, male, asian, stage:Stage IIIC, dead, 103 days	43.4
TCGA-EP-A2KC-01A	62 years, male, black or african american, stage:Stage I, dead, 19 days	42.5
TCGA-FV-A3I0-01A	76 years, female, white, stage:Stage II, alive, 848 days	42.4
TCGA-LG-A6GG-01A	79 years, female, white, stage:Stage II, alive, 387 days	42.2
TCGA-ZP-A9D2-01A	51 years, male, white, stage:'--, dead, 765 days	41.9
TCGA-CC-A3MC-01A	54 years, male, asian, stage:Stage IIIA, alive, 363 days	41.6
TCGA-GJ-A9DB-01A	68 years, male, white, stage:Stage I, dead, 67 days	41.4
TCGA-DD-AAVR-01A	44 years, male, asian, stage:Stage I, alive, 2513 days	41.4
TCGA-DD-AADV-01A	50 years, male, asian, stage:Stage I, alive, 574 days	41.4
TCGA-2Y-A9GT-01A	51 years, male, white, stage:Stage I, dead, 1624 days	41.1
TCGA-DD-AAVV-01A	56 years, male, asian, stage:Stage II, alive, 2455 days	40.9
TCGA-2Y-A9H9-01A	70 years, male, white, stage:Stage I, alive, 697 days	40.6
TCGA-DD-AAEI-01A	72 years, male, asian, stage:Stage I, alive, 1531 days	40.6
TCGA-G3-AAV3-01A	58 years, female, white, stage:Stage II, alive, 412 days	40.5
TCGA-FV-A3I1-01A	81 years, female, white, stage:Stage II, dead, 247 days	40.5
TCGA-GJ-A6C0-01A	75 years, female, white, stage:Stage II, dead, 31 days	40.3
TCGA-2Y-A9H4-01A	68 years, male, black or african american, stage:Stage I, alive, 1452 days	40.1
TCGA-2Y-A9H7-01A	81 years, female, white, stage:Stage I, alive, 1168 days	40.1
TCGA-DD-AACK-01A	70 years, male, asian, stage:Stage I, alive, 9 days	39.9
TCGA-CC-A7IF-01A	59 years, male, asian, stage:Stage IIIA, dead, 649 days	38.8
TCGA-DD-AACG-01A	52 years, male, asian, stage:Stage II, dead, 469 days	38.8
TCGA-XR-A8TC-01A	43 years, female, white, stage:Stage I, alive, 1339 days	38.5
TCGA-DD-AAEH-01A	73 years, male, asian, stage:Stage I, alive, 784 days	38.3
TCGA-DD-A73F-01A	77 years, female, white, stage:Stage I, alive, 1085 days	38.3
TCGA-DD-A4ND-01A	56 years, female, white, stage:Stage I, alive, 2746 days	38.0
TCGA-UB-A7ME-01A	51 years, male, asian, stage:Stage I, alive, 486 days	37.8
TCGA-G3-A3CK-01A	61 years, male, asian, stage:Stage I, alive, 585 days	37.6
TCGA-2Y-A9GX-01A	68 years, male, white, stage:Stage I, alive, 2442 days	37.4
TCGA-EP-A3JL-01A	76 years, male, white, stage:Stage I, alive, 303 days	37.2
TCGA-DD-AACS-01A	39 years, male, asian, stage:Stage I, alive, 1804 days	37.0
TCGA-RC-A7SH-01A	42 years, male, asian, stage:Stage II, alive, 468 days	36.9
TCGA-ED-A7XO-01A	29 years, male, asian, stage:Stage IIIA, alive, 427 days	36.5
TCGA-KR-A7K8-01A	57 years, male, stage:Stage I, alive, 906 days	36.3
TCGA-DD-AAD1-01A	51 years, female, asian, stage:Stage I, alive, 564 days	36.1
TCGA-CC-A8HV-01A	51 years, female, asian, stage:Stage II, dead, 279 days	36.1
TCGA-DD-A4NH-01A	65 years, female, white, stage:Stage IIIB, alive, 917 days	35.9
TCGA-5C-A9VH-01A	70 years, male, white, stage:Stage I, alive, 322 days	35.9
TCGA-DD-AADP-01A	45 years, male, asian, stage:Stage I, alive, 458 days	35.7
TCGA-DD-A73E-01A	66 years, male, white, stage:Stage I, alive, 44 days	35.5
TCGA-KR-A7K0-01A	65 years, male, white, stage:Stage I, dead, 65 days	35.3
TCGA-ED-A459-01A	47 years, male, asian, stage:Stage II, alive, 910 days	35.3
TCGA-ED-A97K-01A	54 years, male, asian, stage:Stage IIIA, alive, 6 days	34.8
TCGA-ED-A66X-01A	35 years, male, asian, stage:Stage IIIA, alive, 406 days	34.8
TCGA-ED-A627-01A	74 years, male, white, stage:Stage I, alive, 423 days	34.5
TCGA-RC-A7SF-01A	66 years, male, asian, stage:Stage I, alive, 579 days	34.3
TCGA-DD-AAVS-01A	56 years, male, asian, stage:Stage I, alive, 1823 days	34.1
TCGA-G3-AAV5-01A	67 years, male, white, stage:Stage II, alive, 354 days	33.5
TCGA-RC-A6M4-01A	74 years, female, white, stage:Stage IIIA, alive, 22 days	33.4
TCGA-MI-A75H-01A	77 years, male, white, stage:'--, alive, 747 days	33.3
TCGA-DD-AAVW-01A	35 years, male, asian, stage:Stage I, alive, 2317 days	33.2
TCGA-2Y-A9GW-01A	64 years, male, white, stage:Stage I, dead, 1271 days	33.2
TCGA-DD-AAE2-01A	51 years, male, asian, stage:Stage I, alive, 638 days	32.9
TCGA-XR-A8TE-01A	16 years, male, white, stage:Stage IIIA, alive, 925 days	32.7
TCGA-NI-A8LF-01A	74 years, male, white, stage:Stage I, alive, 799 days	32.7
TCGA-DD-A1EE-01A	73 years, male, white, stage:Stage IIIA, dead, 349 days	32.7
TCGA-2Y-A9H8-01A	85 years, female, white, stage:'--, dead, 633 days	32.6
TCGA-BC-A69H-01A	64 years, male, white, stage:Stage II, alive, 444 days	32.1
TCGA-BD-A3EP-01A	75 years, female, black or african american, stage:Stage I, alive, 409 days	32.0
TCGA-ED-A8O5-01A	59 years, female, asian, stage:Stage IIIA, alive, 406 days	31.9
TCGA-DD-A39Z-01A	43 years, female, stage:Stage II, dead, 601 days	31.7
TCGA-2Y-A9GZ-01A	82 years, female, white, stage:Stage II, dead, 848 days	31.3
TCGA-DD-AAD3-01A	43 years, male, asian, stage:Stage I, alive, 1295 days	31.2
TCGA-CC-A7II-01A	54 years, male, asian, stage:Stage IIIA, alive, 399 days	31.2
TCGA-DD-AAEK-01A	51 years, male, asian, stage:Stage II, alive, 1067 days	30.9
TCGA-DD-AAD2-01A	66 years, male, asian, stage:Stage I, alive, 658 days	30.7
TCGA-DD-AAE0-01A	45 years, female, asian, stage:Stage IIIA, alive, 555 days	30.6
TCGA-DD-AADL-01A	58 years, male, asian, stage:Stage I, alive, 636 days	30.3
TCGA-CC-A7IH-01A	58 years, male, asian, stage:Stage IIIA, alive, 365 days	30.3
TCGA-DD-AADR-01A	58 years, male, asian, stage:Stage I, alive, 2028 days	30.2
TCGA-DD-AACO-01A	40 years, male, asian, stage:Stage I, alive, 1876 days	30.0
TCGA-G3-A25S-01A	64 years, male, white, stage:Stage I, dead, 416 days	29.9
TCGA-WJ-A86L-01A	68 years, female, white, stage:Stage I, alive, 345 days	29.9
TCGA-DD-AAW2-01A	69 years, male, asian, stage:Stage I, alive, 1855 days	29.8
TCGA-DD-AADJ-01A	70 years, female, asian, stage:Stage I, alive, 1066 days	29.8
TCGA-2Y-A9H6-01A	68 years, female, white, stage:Stage I, alive, 357 days	29.8
TCGA-G3-AAV4-01A	83 years, female, white, stage:Stage I, dead, 27 days	29.7
TCGA-KR-A7K2-01A	64 years, male, white, stage:Stage I, alive, 829 days	29.4
TCGA-BC-A112-01A	80 years, male, white, stage:'--, dead, 153 days	29.4
TCGA-BC-A10U-01A	69 years, male, white, stage:'--, dead, 837 days	29.2
TCGA-DD-A113-01A	55 years, female, white, stage:Stage II, alive, 2425 days	29.2
TCGA-EP-A12J-01A	62 years, male, black or african american, stage:Stage I, alive, 570 days	29.1
TCGA-DD-A73A-01A	71 years, male, white, stage:Stage I, alive, 728 days	29.0
TCGA-MI-A75C-01A	64 years, male, white, stage:Stage I, alive, 291 days	28.9
TCGA-DD-AAVY-01A	56 years, male, asian, stage:Stage IIIA, alive, 1970 days	28.7
TCGA-G3-A3CG-01A	80 years, male, white, stage:Stage I, alive, 673 days	28.7
TCGA-DD-AACU-01A	59 years, male, asian, stage:Stage I, alive, 1567 days	28.6
TCGA-DD-AAW3-01A	69 years, male, asian, stage:Stage I, alive, 1633 days	28.4
TCGA-UB-A7MC-01A	59 years, male, white, stage:Stage IIIA, alive, 500 days	28.2
TCGA-FV-A3R3-01A	38 years, female, white, stage:Stage I, dead, 366 days	28.1
TCGA-G3-A25X-01A	73 years, male, asian, stage:Stage II, alive, 1779 days	28.1
TCGA-CC-5259-01A	60 years, female, asian, stage:Stage IIIC, alive, 250 days	27.9
TCGA-DD-A4NS-01A	61 years, female, white, stage:Stage I, dead, 2456 days	27.6
TCGA-2Y-A9HA-01A	70 years, male, white, stage:Stage II, dead, 36 days	27.5
TCGA-HP-A5MZ-01A	78 years, male, stage:Stage I, dead, 91 days	27.5
TCGA-DD-AADA-01A	66 years, female, asian, stage:Stage I, alive, 1233 days	27.4
TCGA-G3-A5SM-01A	58 years, male, white, stage:Stage II, alive, 520 days	27.3
TCGA-DD-AAE9-01A	69 years, male, asian, stage:Stage I, alive, 722 days	26.9
TCGA-O8-A75V-01A	54 years, male, stage:Stage I, alive, 538 days	26.9
TCGA-G3-AAV1-01A	51 years, male, asian, stage:Stage IIIC, dead, 359 days	26.3
TCGA-ED-A7PZ-01A	61 years, male, asian, stage:Stage II, alive, 6 days	26.2
TCGA-G3-A25V-01A	68 years, male, white, stage:Stage I, alive, 860 days	26.0
TCGA-ZP-A9D4-01A	64 years, female, white, stage:'--, alive, 395 days	25.9
TCGA-DD-AADG-01A	70 years, male, asian, stage:Stage IIIA, alive, 1145 days	25.9
TCGA-ZP-A9D1-01A	56 years, female, white, stage:'--, alive, 21 days	25.8
TCGA-2Y-A9HB-01A	66 years, male, stage:Stage I, alive, 260 days	25.7
TCGA-DD-A3A6-01A	72 years, female, white, stage:Stage II, dead, 3258 days	25.7
TCGA-MI-A75G-01A	63 years, male, white, stage:Stage II, alive, 698 days	25.4
TCGA-DD-AACE-01A	62 years, male, asian, stage:Stage I, alive, 2184 days	25.3
TCGA-DD-AADY-01A	55 years, female, asian, stage:Stage I, alive, 555 days	25.0
TCGA-FV-A2QR-01A	75 years, male, white, stage:Stage I, dead, 581 days	24.9
TCGA-MI-A75E-01A	61 years, male, white, stage:Stage IIIC, alive, 507 days	24.8
TCGA-DD-A4NI-01A	67 years, male, white, stage:Stage II, alive, 816 days	24.6
TCGA-FV-A2QQ-01A	80 years, male, white, stage:Stage I, alive, 729 days	24.6
TCGA-DD-A11D-01A	57 years, female, white, stage:Stage I, dead, 1560 days	24.5
TCGA-2Y-A9GU-01A	55 years, female, white, stage:Stage I, alive, 1939 days	24.4
TCGA-BC-A3KF-01A	66 years, female, white, stage:Stage I, alive, 8 days	24.4
TCGA-RC-A7SK-01A	59 years, male, asian, stage:Stage I, alive, 472 days	24.4
TCGA-5R-AAAM-01A	65 years, female, white, stage:Stage II, dead, 46 days	24.3
TCGA-DD-AAVU-01A	46 years, male, asian, stage:Stage II, alive, 2202 days	23.7
TCGA-ZP-A9CY-01A	66 years, female, white, stage:'--, alive, 782 days	23.6
TCGA-WQ-AB4B-01A	62 years, male, white, stage:Stage II, alive, 395 days	23.4
TCGA-5R-AA1D-01A	17 years, female, white, stage:Stage IIIA, alive, 449 days	23.4
TCGA-ZP-A9CV-01A	59 years, male, white, stage:'--, dead, 1088 days	23.0
TCGA-DD-A73D-01A	68 years, female, white, stage:Stage II, alive, 693 days	22.7
TCGA-G3-A3CI-01A	71 years, male, white, stage:Stage I, alive, 180 days	22.7
TCGA-K7-A6G5-01A	66 years, male, white, stage:Stage I, alive, 512 days	22.6
TCGA-ED-A7PY-01A	20 years, female, asian, stage:Stage II, alive, 390 days	22.5
TCGA-DD-AACQ-01A	50 years, male, asian, stage:Stage II, dead, 432 days	22.4
TCGA-ZS-A9CD-01A	73 years, male, white, stage:Stage II, dead, 1386 days	22.4
TCGA-G3-A5SL-01A	70 years, male, white, stage:Stage II, alive, 621 days	22.2
TCGA-DD-AACN-01A	32 years, male, asian, stage:Stage I, alive, 1302 days	22.1
TCGA-BC-A10T-01A	76 years, male, white, stage:'--, dead, 837 days	21.9
TCGA-5R-AA1C-01A	57 years, male, white, stage:Stage II, alive, 520 days	21.9
TCGA-G3-A7M5-01A	76 years, male, asian, stage:Stage I, alive, 447 days	21.8
TCGA-DD-A4NV-01A	61 years, male, white, stage:Stage IIIA, alive, 2398 days	21.7
TCGA-DD-A118-01A	77 years, female, white, stage:Stage II, alive, 3437 days	21.7
TCGA-ED-A7XP-01A	53 years, female, asian, stage:Stage II, alive, 400 days	21.6
TCGA-DD-A4NG-01A	77 years, male, white, stage:Stage IIIA, dead, 802 days	21.3
TCGA-RC-A7SB-01A	53 years, male, asian, stage:Stage II, alive, 588 days	20.7
TCGA-DD-AAED-01A	51 years, male, asian, stage:Stage I, alive, 763 days	20.6
TCGA-DD-AAVX-01A	38 years, male, asian, stage:Stage II, alive, 1718 days	20.5
TCGA-DD-AACT-01A	69 years, female, asian, stage:Stage I, alive, 1562 days	20.4
TCGA-DD-A1EI-01A	46 years, male, asian, stage:Stage I, alive, 183 days	20.4
TCGA-MR-A8JO-01A	34 years, male, white, stage:Stage I, alive, 330 days	20.3
TCGA-EP-A26S-01A	70 years, male, white, stage:Stage I, alive, 608 days	20.1
TCGA-DD-A1EK-01A	64 years, female, white, stage:Stage IVB, dead, 558 days	19.7
TCGA-DD-A11B-01A	73 years, male, white, stage:Stage I, dead, 14 days	19.7
TCGA-DD-AAC8-01A	72 years, male, asian, stage:Stage I, dead, 16 days	19.6
TCGA-DD-A1EB-01A	72 years, female, stage:Stage I, alive, 2017 days	19.4
TCGA-BC-A10S-01A	81 years, male, white, stage:'--, dead, 1423 days	19.2
TCGA-CC-A9FW-01A	68 years, male, asian, stage:Stage IIIA, alive, 248 days	19.2
TCGA-G3-A6UC-01A	65 years, male, white, stage:Stage IIIB, alive, 671 days	19.2
TCGA-ED-A4XI-01A	58 years, male, asian, stage:Stage II, alive, 819 days	19.2
TCGA-DD-AADM-01A	58 years, male, asian, stage:Stage II, dead, 12 days	18.9
TCGA-DD-AAEG-01A	59 years, female, asian, stage:Stage I, alive, 719 days	18.8
TCGA-DD-AADQ-01A	59 years, male, asian, stage:Stage II, alive, 436 days	18.8
TCGA-DD-AAW0-01A	54 years, male, asian, stage:Stage I, alive, 2015 days	18.6
TCGA-CC-A9FS-01A	55 years, male, asian, stage:Stage II, alive, 211 days	18.6
TCGA-DD-A4NB-01A	25 years, male, white, stage:Stage I, alive, 989 days	18.5
TCGA-DD-AADI-01A	43 years, female, asian, stage:Stage I, alive, 1085 days	18.3
TCGA-G3-A25Z-01A	58 years, male, asian, stage:Stage I, alive, 655 days	18.2
TCGA-DD-AAVP-01A	48 years, male, asian, stage:Stage I, alive, 2752 days	18.0
TCGA-2Y-A9GV-01A	54 years, female, white, stage:Stage I, dead, 2532 days	18.0
TCGA-DD-A3A9-01A	64 years, female, white, stage:Stage IVB, dead, 931 days	17.4
TCGA-ED-A82E-01A	60 years, female, asian, stage:Stage IIIA, alive, 408 days	17.2
TCGA-2Y-A9H3-01A	45 years, male, white, stage:Stage II, alive, 1516 days	17.2
TCGA-ZS-A9CG-01A	55 years, male, white, stage:Stage II, alive, 341 days	17.1
TCGA-BC-A10X-01A	52 years, female, white, stage:Stage IIIA, dead, 770 days	17.0
TCGA-ZS-A9CE-01A	79 years, female, white, stage:Stage II, alive, 1241 days	16.7
TCGA-ZP-A9D0-01A	67 years, female, black or african american, stage:'--, alive, 1091 days	16.3
TCGA-DD-AACY-01A	61 years, male, asian, stage:Stage I, alive, 1450 days	16.2
TCGA-DD-A119-01A	40 years, male, asian, stage:Stage IV, dead, 223 days	16.1
TCGA-DD-AAW1-01A	55 years, male, asian, stage:Stage IIIA, alive, 1989 days	16.0
TCGA-DD-AADK-01A	68 years, female, asian, stage:Stage II, alive, 1049 days	15.9
TCGA-DD-AAE7-01A	72 years, male, asian, stage:Stage I, alive, 644 days	15.9
TCGA-DD-A3A1-01A	65 years, male, stage:Stage IIIA, dead, 233 days	15.8
TCGA-G3-A5SK-01A	58 years, male, white, stage:Stage I, alive, 744 days	15.7
TCGA-DD-A73C-01A	65 years, female, white, stage:Stage IIIA, alive, 701 days	15.5
TCGA-DD-A4NK-01A	80 years, female, white, stage:Stage IIIA, dead, 1210 days	15.4
TCGA-BC-A69I-01A	69 years, male, white, stage:Stage I, alive, 387 days	15.3
TCGA-DD-A3A3-01A	45 years, male, asian, stage:Stage I, dead, 535 days	15.2
TCGA-3K-AAZ8-01A	65 years, male, black or african american, stage:Stage IIIB, alive, 396 days	14.8
TCGA-CC-A7IL-01A	61 years, male, asian, stage:Stage IIIA, dead, 278 days	14.8
TCGA-UB-AA0V-01A	69 years, female, white, stage:Stage I, alive, 314 days	14.8
TCGA-DD-A39V-01A	77 years, male, white, stage:Stage II, dead, 643 days	14.6
TCGA-DD-A4NO-01A	65 years, male, white, stage:Stage I, alive, 2245 days	14.5
TCGA-HP-A5N0-01A	90 years, female, stage:'--, dead, 752 days	14.2
TCGA-G3-A3CJ-01A	52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	14.1
TCGA-DD-AAC9-01A	51 years, male, asian, stage:Stage I, alive, 347 days	13.9
TCGA-DD-A39W-01A	29 years, female, white, stage:Stage III, dead, 827 days	13.8
TCGA-K7-A5RF-01A	64 years, male, white, stage:Stage I, alive, 631 days	13.8
TCGA-DD-AAE3-01A	50 years, male, asian, stage:Stage I, alive, 566 days	13.7
TCGA-DD-AAE1-01A	52 years, male, asian, stage:Stage I, alive, 552 days	13.5
TCGA-RC-A6M5-01A	20 years, female, white, stage:Stage IVA, alive, 15 days	13.4
TCGA-DD-AACD-01A	48 years, male, asian, stage:Stage I, dead, 381 days	13.3
TCGA-DD-AAEB-01A	60 years, male, asian, stage:Stage I, alive, 478 days	13.1
TCGA-BD-A3ER-01A	62 years, male, white, stage:Stage II, alive, 1115 days	13.0
TCGA-BC-A10R-01A	66 years, female, white, stage:'--, dead, 308 days	12.8
TCGA-CC-A123-01A	24 years, female, asian, stage:Stage IIIA, alive, 219 days	12.8
TCGA-DD-AACJ-01A	75 years, male, asian, stage:Stage II, alive, 2102 days	12.6
TCGA-DD-A39X-01A	78 years, female, white, stage:Stage I, dead, 1694 days	12.5
TCGA-G3-AAV2-01A	50 years, male, white, stage:Stage I, alive, 372 days	12.4
TCGA-DD-A3A7-01A	67 years, male, stage:Stage IIIB, dead, 419 days	12.3
TCGA-ES-A2HS-01A	80 years, male, white, stage:Stage I, dead, 688 days	12.1
TCGA-LG-A9QD-01A	68 years, male, white, stage:Stage IIIA, alive, 366 days	12.1
TCGA-DD-A4NL-01A	46 years, male, white, stage:Stage I, alive, 1711 days	12.1
TCGA-WX-AA46-01A	61 years, male, white, stage:Stage II, alive, 756 days	12.1
TCGA-BC-A110-01A	51 years, female, black or african american, stage:'--, dead, 2116 days	11.7
TCGA-DD-A1ED-01A	68 years, male, white, stage:Stage I, alive, 2301 days	11.7
TCGA-WX-AA47-01A	33 years, female, white, stage:Stage IIIA, dead, 556 days	11.3
TCGA-LG-A9QC-01A	48 years, male, white, stage:Stage I, alive, 425 days	11.1
TCGA-DD-A3A8-01A	75 years, male, white, stage:Stage II, dead, 11 days	11.1
TCGA-DD-A116-01A	68 years, male, asian, stage:Stage IIIA, dead, 1622 days	11.1
TCGA-FV-A496-01A	84 years, female, white, stage:Stage I, alive, 10 days	10.8
TCGA-DD-AADO-01A	55 years, male, asian, stage:Stage I, alive, 453 days	10.4
TCGA-G3-AAV0-01A	58 years, male, asian, stage:Stage I, alive, 476 days	10.3
TCGA-MR-A520-01A	58 years, male, white, stage:Stage I, alive, 229 days	10.1
TCGA-DD-AACI-01A	69 years, male, asian, stage:Stage II, alive, 1618 days	9.7
TCGA-FV-A4ZP-01A	78 years, male, white, stage:Stage IIIA, dead, 2486 days	9.6
TCGA-DD-AADS-01A	63 years, male, asian, stage:Stage I, alive, 474 days	9.4
TCGA-DD-A4NF-01A	72 years, male, white, stage:Stage I, alive, 942 days	9.1
TCGA-T1-A6J8-01A	68 years, male, white, stage:'--, alive, 23 days	8.9
TCGA-DD-A3A4-01A	37 years, male, white, stage:Stage IIIA, dead, 612 days	8.5
TCGA-2Y-A9H1-01A	58 years, male, white, stage:Stage I, dead, 1229 days	8.0
TCGA-G3-A7M8-01A	31 years, male, asian, stage:Stage I, alive, 430 days	8.0
TCGA-BC-A5W4-01A	69 years, male, white, stage:Stage IIIA, dead, 547 days	7.7
TCGA-DD-A3A2-01A	76 years, female, white, stage:Stage I, dead, 2131 days	7.6
TCGA-NI-A4U2-01A	71 years, male, white, stage:Stage IIIA, dead, 1791 days	7.6
TCGA-G3-A7M7-01A	65 years, male, white, stage:Stage I, alive, 361 days	7.5
TCGA-DD-A4NP-01A	32 years, male, white, stage:Stage I, alive, 3308 days	7.3
TCGA-DD-AADU-01A	60 years, male, asian, stage:Stage II, alive, 554 days	7.2
TCGA-ES-A2HT-01A	54 years, male, black or african american, stage:Stage I, dead, 438 days	6.9
TCGA-DD-A73G-01A	73 years, female, white, stage:Stage I, alive, 3478 days	5.9
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ

& Survival analysisⁱ

HMGB2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 41.01

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

43.4

Number of samples

231

Samples

Sample	Description	TPM
DO45145	78 years, male, NA, stage:3, dead, 60 days	283.6
DO50815	62 years, male, NA, stage:3, alive, 150 days	205.1
DO45299	70 years, female, NA, stage:1, alive, 1440 days	191.8
DO23525	71 years, male, NA, stage:4, alive, 1050 days	190.0
DO45127	73 years, male, NA, stage:3, dead, 420 days	173.0
DO45287	74 years, male, NA, stage:1, alive, 390 days	152.7
DO23549	74 years, male, NA, stage:3, alive, 990 days	145.5
DO45269	59 years, male, NA, stage:3, alive, 750 days	123.1
DO45161	74 years, male, NA, stage:2, dead, 540 days	122.7
DO50809	56 years, male, NA, stage:3, dead, 720 days	112.5
DO45307	54 years, female, NA, stage:4, dead, 240 days	110.0
DO45185	89 years, male, NA, stage:2, alive, 600 days	109.5
DO50798	77 years, male, NA, stage:3, dead, 30 days	102.3
DO48747	62 years, male, NA, stage:3, alive, 540 days	98.7
DO50778	60 years, male, NA, stage:4, alive, 630 days	96.3
DO45237	58 years, male, NA, stage:2, alive, 900 days	92.5
DO45253	50 years, male, NA, stage:2, alive, 870 days	92.5
DO45225	69 years, male, NA, stage:1, alive, 1050 days	92.4
DO23514	64 years, male, NA, stage:2, alive, 1290 days	91.5
DO23537	79 years, male, NA, stage:2, dead, 900 days	91.4
DO45267	73 years, male, NA, stage:3, dead, 570 days	91.4
DO23521	63 years, male, NA, stage:3, alive, 1110 days	88.0
DO23539	77 years, male, NA, stage:1, alive, 1110 days	86.4
DO45211	76 years, male, NA, stage:3, alive, 240 days	86.1
DO23516	69 years, male, NA, stage:3, dead, 20 days	82.3
DO45155	69 years, male, NA, stage:2, alive, 2160 days	82.0
DO50799	66 years, female, NA, stage:2, alive, 540 days	77.2
DO45263	67 years, male, NA, stage:3, dead, 270 days	75.4
DO48715	58 years, female, NA, stage:2, dead, 690 days	75.1
DO50829	78 years, male, NA, stage:3, alive, 570 days	74.7
DO48723	73 years, male, NA, stage:1, alive, 600 days	73.2
DO48757	68 years, female, NA, stage:3, alive, 480 days	71.8
DO48737	52 years, male, NA, stage:1, alive, 720 days	68.2
DO50806	70 years, male, NA, stage:4, alive, 540 days	67.8
DO50807	67 years, male, NA, stage:1, alive, 540 days	67.6
DO23546	63 years, male, NA, stage:2, alive, 1050 days	66.7
DO45259	65 years, male, NA, stage:3, alive, 330 days	66.7
DO23533	61 years, male, NA, stage:2, alive, 900 days	65.1
DO50791	79 years, female, NA, stage:1, dead, 480 days	64.4
DO45093	71 years, male, NA, stage:2, dead, 720 days	64.1
DO48728	74 years, female, NA, stage:2, alive, 150 days	63.7
DO45275	65 years, male, NA, stage:3, dead, 10 days	63.3
DO45205	67 years, female, NA, stage:2, dead, 90 days	62.3
DO23543	63 years, male, NA, stage:2, alive, 1020 days	59.1
DO48717	54 years, male, NA, stage:4, dead, 180 days	58.9
DO48720	62 years, female, NA, stage:2, alive, 570 days	58.9
DO45235	68 years, female, NA, stage:1, alive, 900 days	57.2
DO45105	61 years, male, NA, stage:1, alive, 1680 days	57.1
DO45281	83 years, male, NA, stage:4, alive, 750 days	56.9
DO23515	71 years, male, NA, stage:2, alive, 1230 days	56.9
DO48697	64 years, female, NA, stage:2, dead, 810 days	56.5
DO23509	60 years, male, NA, stage:3, dead, 780 days	56.1
DO48681	57 years, male, NA, stage:2, alive, 900 days	56.0
DO45157	62 years, male, NA, stage:2, alive, 1980 days	55.9
DO45217	69 years, female, NA, stage:3, dead, 270 days	55.0
DO45197	51 years, male, NA, stage:2, alive, 1170 days	53.9
DO23524	71 years, female, NA, stage:2, alive, 1050 days	52.9
DO45301	56 years, male, NA, stage:2, dead, 1440 days	52.9
DO48730	73 years, female, NA, stage:2, alive, 630 days	52.3
DO45231	84 years, male, NA, stage:2, alive, 930 days	52.1
DO45209	70 years, male, NA, stage:4, alive, 1350 days	51.7
DO23552	80 years, female, NA, stage:1, alive, 810 days	51.0
DO45141	73 years, male, NA, stage:2, alive, 1320 days	50.5
DO45277	64 years, male, NA, stage:3, alive, 600 days	50.1
DO48712	50 years, male, NA, stage:2, alive, 810 days	49.5
DO45139	63 years, male, NA, stage:3, alive, 1320 days	49.5
DO45289	78 years, female, NA, stage:3, alive, 360 days	49.3
DO45163	76 years, male, NA, stage:2, alive, 960 days	48.8
DO45187	32 years, female, NA, stage:1, alive, 1260 days	48.6
DO50840	49 years, male, NA, stage:2, alive, 330 days	48.5
DO50774	68 years, female, NA, stage:2, alive, 720 days	48.0
DO23508	79 years, female, NA, stage:2, alive, 390 days	47.8
DO23530	53 years, male, NA, stage:4, dead, 180 days	46.7
DO45165	75 years, male, NA, stage:2, alive, 690 days	46.5
DO45193	68 years, female, NA, stage:4, dead, 120 days	46.5
DO45135	77 years, male, NA, stage:1, alive, 1410 days	46.1
DO48751	68 years, male, NA, stage:2, dead, 480 days	45.7
DO48746	76 years, male, NA, stage:3, alive, 570 days	45.4
DO50803	62 years, female, NA, stage:1, alive, 540 days	44.3
DO45297	61 years, female, NA, stage:4, dead, 1260 days	44.2
DO50819	72 years, female, NA, stage:2, alive, 510 days	44.1
DO45117	73 years, female, NA, stage:2, dead, 1110 days	43.9
DO48693	71 years, male, NA, stage:2, alive, 900 days	43.6
DO45273	62 years, male, NA, stage:2, alive, 480 days	42.8
DO48741	64 years, male, NA, stage:3, alive, 240 days	42.1
DO45261	74 years, male, NA, stage:3, alive, 990 days	41.9
DO45096	69 years, male, NA, stage:2, dead, 1290 days	41.9
DO50785	37 years, male, NA, stage:4, dead, 90 days	41.1
DO45153	77 years, female, NA, stage:2, alive, 1380 days	40.9
DO48704	68 years, female, NA, stage:3, alive, 750 days	40.8
DO48679	72 years, male, NA, stage:2, alive, 1200 days	40.1
DO23526	66 years, male, NA, stage:3, alive, 1050 days	39.7
DO45143	69 years, male, NA, stage:3, alive, 1290 days	39.6
DO45265	73 years, male, NA, stage:3, alive, 1020 days	39.1
DO48682	72 years, female, NA, stage:3, dead, 120 days	39.1
DO23542	66 years, male, NA, stage:3, alive, 960 days	38.8
DO50820	77 years, female, NA, stage:3, alive, 510 days	38.5
DO45095	66 years, male, NA, stage:2, alive, 1620 days	37.7
DO45179	78 years, female, NA, stage:2, alive, 600 days	37.5
DO45221	75 years, female, NA, stage:4, dead, 390 days	37.2
DO50850	74 years, male, NA, stage:3, alive, 720 days	37.1
DO23547	74 years, male, NA, stage:1, alive, 1020 days	37.1
DO45251	57 years, female, NA, stage:2, alive, 900 days	37.0
DO45169	74 years, male, NA, stage:3, alive, 1350 days	36.7
DO45247	31 years, female, NA, stage:2, alive, 210 days	36.5
DO50787	63 years, male, NA, stage:3, alive, 480 days	36.5
DO23513	76 years, male, NA, stage:3, alive, 1200 days	36.4
DO45245	75 years, female, NA, stage:2, dead, 240 days	36.4
DO45199	86 years, female, NA, stage:2, alive, 1350 days	36.2
DO23523	52 years, male, NA, stage:3, alive, 1080 days	36.1
DO45131	53 years, male, NA, stage:4, dead, 360 days	35.7
DO45123	78 years, female, NA, stage:2, dead, 570 days	34.5
DO50805	72 years, male, NA, stage:2, alive, 690 days	34.1
DO45257	46 years, male, NA, stage:3, alive, 810 days	34.1
DO45239	42 years, male, NA, stage:2, alive, 870 days	34.0
DO45305	66 years, male, NA, stage:4, alive, 300 days	34.0
DO45283	60 years, male, NA, stage:3, alive, 510 days	33.8
DO23541	65 years, male, NA, stage:2, alive, 930 days	33.7
DO50857	72 years, male, NA, stage:2, alive, 210 days	33.7
DO23519	65 years, male, NA, stage:3, alive, 630 days	33.3
DO45115	81 years, male, NA, stage:2, alive, 840 days	33.2
DO23545	67 years, male, NA, stage:2, dead, 570 days	32.8
DO50855	47 years, male, NA, stage:2, alive, 570 days	32.3
DO48732	73 years, male, NA, stage:3, alive, 630 days	31.9
DO45255	81 years, male, NA, stage:3, alive, 720 days	31.8
DO48725	66 years, male, NA, stage:1, alive, 780 days	31.6
DO45092	62 years, male, NA, stage:4, dead, 1200 days	31.2
DO23548	78 years, female, NA, stage:1, alive, 840 days	31.1
DO45219	78 years, male, NA, stage:2, alive, 1080 days	31.1
DO50808	68 years, male, NA, stage:2, alive, 570 days	31.0
DO45213	58 years, male, NA, stage:1, alive, 1200 days	30.7
DO50811	62 years, male, NA, stage:1, alive, 450 days	30.6
DO48736	76 years, female, NA, stage:1, alive, 600 days	30.4
DO23518	67 years, male, NA, stage:2, alive, 1320 days	29.5
DO45097	69 years, male, NA, stage:3, alive, 1620 days	28.7
DO48761	55 years, male, NA, stage:2, alive, 870 days	28.6
DO45249	57 years, male, NA, stage:1, alive, 630 days	28.2
DO45171	56 years, male, NA, stage:3, alive, 600 days	28.1
DO45207	68 years, male, NA, stage:1, alive, 1050 days	27.5
DO45103	47 years, male, NA, stage:3, alive, 450 days	27.4
DO48716	71 years, male, NA, stage:2, alive, 720 days	27.3
DO48706	72 years, male, NA, stage:2, alive, 870 days	27.3
DO45223	67 years, male, NA, stage:4, alive, 1020 days	27.0
DO23511	83 years, female, NA, stage:3, dead, 180 days	26.7
DO50783	62 years, male, NA, stage:3, alive, 480 days	26.6
DO23535	67 years, male, NA, stage:1, alive, 960 days	26.6
DO45121	61 years, male, NA, stage:3, alive, 1530 days	26.5
DO227801	77 years, female, NA, stage:1, alive, 660 days	26.5
DO45113	58 years, male, NA, stage:3, alive, 1560 days	25.9
DO45159	65 years, male, NA, stage:3, alive, 1470 days	25.7
DO45173	63 years, male, NA, stage:3, alive, 1170 days	25.6
DO45243	74 years, female, NA, stage:3, alive, 930 days	25.5
DO23510	80 years, female, NA, stage:2, alive, 870 days	24.7
DO45189	85 years, female, NA, stage:2, alive, 1200 days	23.5
DO50822	66 years, male, NA, stage:2, alive, 510 days	23.4
DO45201	49 years, male, NA, stage:1, alive, 900 days	23.4
DO50776	75 years, male, NA, stage:1, alive, 690 days	23.2
DO23550	69 years, male, NA, stage:1, alive, 990 days	23.1
DO23536	56 years, male, NA, stage:2, alive, 930 days	22.8
DO50844	75 years, male, NA, stage:4, alive, 300 days	22.7
DO45129	61 years, male, NA, stage:3, alive, 1470 days	22.5
DO45229	74 years, male, NA, stage:1, alive, 990 days	22.1
DO50793	76 years, male, NA, stage:4, alive, 540 days	22.0
DO23527	72 years, male, NA, stage:1, alive, 1050 days	21.8
DO45183	72 years, female, NA, stage:2, dead, 570 days	21.6
DO50802	49 years, male, NA, stage:2, alive, 930 days	21.5
DO45181	84 years, female, NA, stage:2, alive, 1200 days	21.4
DO48700	78 years, female, NA, stage:2, alive, 810 days	21.4
DO23534	60 years, male, NA, stage:2, alive, 840 days	21.3
DO23540	73 years, male, NA, stage:1, alive, 750 days	21.2
DO45091	56 years, male, NA, stage:2, dead, 1320 days	21.2
DO45241	49 years, male, NA, stage:1, alive, 1080 days	21.1
DO48759	73 years, male, NA, stage:3, alive, 720 days	20.8
DO50816	63 years, male, NA, stage:2, alive, 390 days	20.4
DO45279	67 years, male, NA, stage:3, alive, 1290 days	20.4
DO50817	75 years, male, NA, stage:2, alive, 390 days	20.1
DO23529	72 years, male, NA, stage:4, alive, 930 days	20.0
DO45119	74 years, male, NA, stage:3, dead, 510 days	20.0
DO45133	64 years, male, NA, stage:3, dead, 660 days	19.8
DO48695	77 years, male, NA, stage:2, alive, 720 days	19.5
DO45227	57 years, female, NA, stage:2, alive, 1020 days	19.5
DO45203	71 years, female, NA, stage:2, alive, 1170 days	19.3
DO48701	78 years, male, NA, stage:2, alive, 780 days	18.9
DO48721	58 years, female, NA, stage:1, alive, 900 days	18.4
DO23528	45 years, female, NA, stage:2, alive, 1020 days	18.3
DO50818	65 years, male, NA, stage:2, alive, 510 days	18.3
DO45167	67 years, male, NA, stage:2, dead, 1440 days	18.2
DO50832	73 years, male, NA, stage:3, alive, 90 days	17.9
DO45099	46 years, male, NA, stage:3, alive, 1590 days	17.4
DO45177	81 years, female, NA, stage:3, alive, 1260 days	17.4
DO48743	69 years, female, NA, stage:2, alive, 570 days	17.4
DO48672	81 years, male, NA, stage:2, alive, 450 days	17.1
DO45094	76 years, male, NA, stage:3, alive, 1650 days	16.8
DO48742	76 years, male, NA, stage:2, alive, 600 days	16.5
DO48733	72 years, male, NA, stage:2, alive, 600 days	16.5
DO23538	67 years, male, NA, stage:2, alive, 450 days	16.3
DO45233	83 years, male, NA, stage:3, alive, 900 days	16.3
DO50814	83 years, male, NA, stage:3, alive, 420 days	16.0
DO23531	78 years, female, NA, stage:3, alive, 900 days	15.9
DO23544	67 years, male, NA, stage:2, alive, 960 days	15.8
DO50800	74 years, male, NA, stage:2, alive, 510 days	15.8
DO45137	38 years, male, NA, stage:1, alive, 1320 days	15.6
DO227643	79 years, male, NA, stage:2, alive, 1260 days	15.2
DO45285	59 years, male, NA, stage:3, alive, 480 days	14.8
DO45175	74 years, male, NA, stage:2, alive, 1140 days	14.7
DO45125	58 years, male, NA, stage:3, alive, 1680 days	14.7
DO50813	56 years, male, NA, stage:2, alive, 420 days	14.6
DO45109	63 years, male, NA, stage:2, alive, 1590 days	14.2
DO50825	70 years, male, NA, stage:2, alive, 390 days	14.2
DO50789	73 years, female, NA, stage:2, alive, 570 days	14.2
DO50804	81 years, male, NA, stage:2, alive, 720 days	13.8
DO50845	72 years, male, NA, stage:3, alive, 210 days	13.6
DO50859	77 years, male, NA, stage:2, alive, 180 days	13.4
DO48677	58 years, male, NA, stage:3, alive, 1140 days	13.3
DO48760	70 years, female, NA, stage:2, alive, 690 days	13.1
DO48727	81 years, female, NA, stage:2, dead, 390 days	13.0
DO48719	80 years, male, NA, stage:2, alive, 690 days	13.0
DO45215	65 years, male, NA, stage:2, alive, 1170 days	12.8
DO45149	70 years, female, NA, stage:2, alive, 1260 days	12.8
DO45191	61 years, female, NA, stage:2, alive, 1200 days	12.6
DO23551	73 years, male, NA, stage:3, dead, 150 days	12.3
DO45107	63 years, female, NA, stage:2, alive, 1710 days	12.0
DO45303	62 years, female, NA, stage:3, alive, 990 days	11.6
DO23517	62 years, male, NA, stage:2, alive, 1200 days	10.7
DO23532	71 years, female, NA, stage:1, alive, 960 days	10.6
DO23512	60 years, male, NA, stage:1, alive, 1260 days	10.4
DO45195	62 years, male, NA, stage:1, alive, 390 days	9.8
DO45101	63 years, male, NA, stage:2, alive, 1680 days	9.1
DO45111	74 years, male, NA, stage:2, alive, 1590 days	8.0
DO48674	80 years, male, NA, stage:2, alive, 1260 days	6.0
DO50839	47 years, female, NA, stage:3, alive, 330 days	3.4
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
965	Tumor	1.6
497	Tumor	1.3
727	Tumor	1.2
285	Tumor	1.2
917	Tumor	1.1
523	Tumor	1.1
463	Tumor	1.0
211	Tumor	1.0
487	Tumor	1.0
661	Tumor	1.0
695	Tumor	1.0
467	Tumor	1.0
351	Tumor	0.9
953	Tumor	0.9
977	Tumor	0.9
311	Tumor	0.9
131	Tumor	0.9
413	Tumor	0.9
1031	Tumor	0.9
983	Tumor	0.9
161	Tumor	0.9
536	Normal	0.8
923	Tumor	0.8
724	Normal	0.8
951	Tumor	0.8
355	Tumor	0.8
943	Tumor	0.8
385	Tumor	0.8
447	Tumor	0.8
431	Tumor	0.7
865	Tumor	0.7
663	Tumor	0.7
411	Tumor	0.7
445	Tumor	0.6
957	Tumor	0.6
277	Tumor	0.6
963	Tumor	0.6
877	Tumor	0.6
535	Tumor	0.6
192	Normal	0.6
493	Tumor	0.6
455	Tumor	0.6
814	Normal	0.5
647	Tumor	0.5
492	Normal	0.5
141	Tumor	0.5
883	Tumor	0.5
823	Tumor	0.5
478	Normal	0.5
813	Tumor	0.5
425	Tumor	0.5
1013	Tumor	0.5
267	Tumor	0.5
213	Tumor	0.5
815	Tumor	0.5
817	Tumor	0.5
966	Normal	0.5
721	Tumor	0.4
861	Tumor	0.4
297	Tumor	0.4
498	Normal	0.4
524	Normal	0.4
975	Tumor	0.4
881	Tumor	0.4
313	Tumor	0.4
737	Tumor	0.4
785	Tumor	0.4
343	Tumor	0.4
873	Tumor	0.4
357	Tumor	0.4
283	Tumor	0.3
516	Normal	0.3
857	Tumor	0.3
471	Tumor	0.3
538	Normal	0.3
473	Tumor	0.3
537	Tumor	0.3
916	Normal	0.3
185	Tumor	0.3
1021	Tumor	0.3
545	Tumor	0.3
517	Tumor	0.3
224	Normal	0.3
434	Normal	0.3
567	Tumor	0.3
375	Tumor	0.2
415	Tumor	0.2
331	Tumor	0.2
483	Tumor	0.2
427	Tumor	0.2
573	Tumor	0.2
978	Normal	0.2
341	Tumor	0.2
816	Normal	0.2
491	Tumor	0.2
921	Tumor	0.2
367	Tumor	0.2
716	Normal	0.2
1025	Tumor	0.2
112	Tumor	0.2
852	Normal	0.2
741	Tumor	0.2
271	Tumor	0.1
1044	Normal	0.1
715	Tumor	0.1
851	Tumor	0.1
743	Tumor	0.1
984	Normal	0.1
755	Tumor	0.1
635	Tumor	0.1
778	Normal	0.1
444	Normal	0.1
268	Normal	0.1
671	Tumor	0.1
433	Tumor	0.1
686	Normal	0.1
488	Normal	0.1
525	Tumor	0.1
1043	Tumor	0.0
461	Tumor	0.0
958	Normal	0.0
938	Normal	0.0
867	Tumor	0.0
563	Tumor	0.0
383	Tumor	0.0
527	Tumor	0.0
223	Tumor	0.0
967	Tumor	0.0
126	Normal	0.0
685	Tumor	0.0
384	Normal	0.0
878	Normal	0.0
364	Normal	0.0
494	Normal	0.0
363	Tumor	0.0
188	Normal	0.0
481	Tumor	0.0
187	Tumor	0.0
697	Tumor	0.0
212	Normal	0.0
1015	Tumor	-0.1
127	Tumor	-0.1
386	Normal	-0.1
968	Normal	-0.1
976	Normal	-0.1
744	Normal	-0.1
954	Normal	-0.1
146	Normal	-0.1
1014	Normal	-0.1
443	Tumor	-0.1
217	Tumor	-0.1
1032	Normal	-0.1
553	Tumor	-0.1
913	Tumor	-0.1
272	Normal	-0.1
125	Tumor	-0.1
352	Normal	-0.1
918	Normal	-0.1
952	Normal	-0.1
195	Tumor	-0.1
362	Normal	-0.1
926	Normal	-0.1
924	Normal	-0.1
328	Normal	-0.1
387	Tumor	-0.1
465	Tumor	-0.1
884	Normal	-0.1
191	Tumor	-0.1
874	Normal	-0.1
261	Tumor	-0.1
472	Normal	-0.1
312	Normal	-0.1
518	Normal	-0.1
628	Normal	-0.2
1042	Normal	-0.2
1028	Normal	-0.2
925	Tumor	-0.2
423	Tumor	-0.2
882	Normal	-0.2
662	Normal	-0.2
866	Normal	-0.2
262	Normal	-0.2
421	Tumor	-0.2
937	Tumor	-0.2
395	Tumor	-0.2
546	Normal	-0.2
142	Normal	-0.2
171	Tumor	-0.2
332	Normal	-0.2
922	Normal	-0.2
738	Normal	-0.2
135	Tumor	-0.2
818	Normal	-0.2
956	Normal	-0.2
554	Normal	-0.2
1026	Normal	-0.2
344	Normal	-0.2
533	Tumor	-0.2
393	Tumor	-0.3
412	Normal	-0.3
448	Normal	-0.3
284	Normal	-0.3
477	Tumor	-0.3
451	Tumor	-0.3
641	Tumor	-0.3
557	Tumor	-0.3
365	Tumor	-0.3
137	Tumor	-0.3
858	Normal	-0.3
366	Normal	-0.3
944	Normal	-0.3
514	Normal	-0.3
1016	Normal	-0.3
824	Normal	-0.3
484	Normal	-0.3
756	Normal	-0.3
147	Tumor	-0.3
114	Normal	-0.3
474	Normal	-0.3
915	Tumor	-0.3
113	Tumor	-0.3
982	Normal	-0.4
435	Tumor	-0.4
714	Normal	-0.4
361	Tumor	-0.4
1022	Normal	-0.4
696	Normal	-0.4
231	Tumor	-0.4
777	Tumor	-0.4
615	Tumor	-0.4
617	Tumor	-0.4
534	Normal	-0.4
558	Normal	-0.4
713	Tumor	-0.4
698	Normal	-0.4
723	Tumor	-0.4
342	Normal	-0.4
728	Normal	-0.4
1046	Normal	-0.4
456	Normal	-0.4
964	Normal	-0.4
672	Normal	-0.4
863	Tumor	-0.4
138	Normal	-0.4
298	Normal	-0.4
665	Tumor	-0.4
1041	Tumor	-0.4
912	Normal	-0.4
722	Normal	-0.4
572	Normal	-0.4
124	Normal	-0.4
914	Normal	-0.4
1045	Tumor	-0.4
221	Tumor	-0.4
391	Tumor	-0.4
1027	Tumor	-0.4
396	Normal	-0.4
742	Normal	-0.4
515	Tumor	-0.4
786	Normal	-0.4
111	Normal	-0.5
911	Tumor	-0.5
981	Tumor	-0.5
862	Normal	-0.5
466	Normal	-0.5
214	Normal	-0.5
136	Normal	-0.5
446	Normal	-0.5
528	Normal	-0.5
356	Normal	-0.5
416	Normal	-0.5
574	Normal	-0.5
218	Normal	-0.5
864	Normal	-0.5
227	Tumor	-0.5
746	Normal	-0.5
513	Tumor	-0.6
228	Normal	-0.6
392	Normal	-0.6
424	Normal	-0.6
278	Normal	-0.6
664	Normal	-0.6
526	Normal	-0.6
468	Normal	-0.6
482	Normal	-0.6
462	Normal	-0.6
196	Normal	-0.6
128	Normal	-0.6
354	Normal	-0.6
257	Tumor	-0.6
353	Tumor	-0.6
145	Tumor	-0.6
955	Tumor	-0.6
314	Normal	-0.6
358	Normal	-0.7
428	Normal	-0.7
636	Normal	-0.7
148	Normal	-0.7
464	Normal	-0.7
571	Tumor	-0.7
432	Normal	-0.7
394	Normal	-0.7
616	Normal	-0.7
376	Normal	-0.7
868	Normal	-0.7
388	Normal	-0.7
666	Normal	-0.7
232	Normal	-0.7
286	Normal	-0.8
327	Tumor	-0.8
368	Normal	-0.8
422	Normal	-0.8
132	Normal	-0.8
222	Normal	-0.8
564	Normal	-0.8
123	Tumor	-0.8
162	Normal	-0.9
648	Normal	-0.9
568	Normal	-0.9
426	Normal	-0.9
642	Normal	-0.9
452	Normal	-0.9
436	Normal	-0.9
186	Normal	-0.9
414	Normal	-0.9
258	Normal	-0.9
627	Tumor	-1.0
172	Normal	-1.0
618	Normal	-1.0
745	Tumor	-1.0
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA003506	Antibody HPA053314	Antibody CAB037206
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Carcinoma, Hepatocellular, NOS
Cholangiocarcinoma