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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
APEH is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
121.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
102.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
97.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
87.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
84.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
81.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
78.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
76.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
74.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
73.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
71.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
70.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
68.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
68.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
68.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
67.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
67.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
67.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
66.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
64.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
64.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
63.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
63.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
61.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
60.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
59.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
59.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
58.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
58.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
57.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
57.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
56.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
56.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
56.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
55.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
55.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
54.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
54.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
54.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
53.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
52.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
52.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
52.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
51.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
51.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
50.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
50.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
49.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
49.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
49.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
48.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
48.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
48.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
48.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
46.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
46.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
46.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
46.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
46.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
45.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
45.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
45.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
45.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
44.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
44.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
44.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
44.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
44.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
44.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
44.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
43.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
43.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
42.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
42.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
42.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
42.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
42.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
41.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
40.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
40.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
39.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
39.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
39.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
38.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
37.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
37.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
37.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
37.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
37.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
37.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
37.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
37.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
36.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
36.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
36.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
36.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
35.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
35.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
35.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
35.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
34.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
34.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
34.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
34.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
32.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
31.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
31.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
31.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
31.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
31.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
30.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
30.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
29.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
29.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
29.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
28.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
28.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
28.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
28.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
27.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
27.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
27.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
27.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
27.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
27.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
26.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
25.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
25.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
25.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
23.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
22.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
22.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
22.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
21.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
20.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
19.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
18.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
17.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
14.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
12.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
12.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
11.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
10.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
8.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
APEH is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.4
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
80.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
70.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
61.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
58.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
57.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
57.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
56.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
52.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
52.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
52.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
51.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
51.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
51.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
50.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
49.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
49.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
49.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
49.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
49.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
48.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
47.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
47.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
46.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
45.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
44.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
44.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
44.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
44.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
44.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
42.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
41.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
41.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
41.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
40.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
40.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
40.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
39.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
39.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
39.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
39.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
38.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
38.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
37.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
37.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
37.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
37.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
35.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
35.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
34.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
34.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
33.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
33.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
32.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
32.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
32.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
31.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
31.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
31.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
31.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
30.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
30.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
29.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
28.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
28.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
27.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
26.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
24.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
24.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
24.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
21.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
19.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
16.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
746
Normal
0.5
742
Normal
0.5
756
Normal
0.5
1022
Normal
0.5
924
Normal
0.5
722
Normal
0.4
616
Normal
0.4
222
Normal
0.4
436
Normal
0.4
862
Normal
0.4
546
Normal
0.4
714
Normal
0.4
162
Normal
0.4
388
Normal
0.4
365
Tumor
0.4
448
Normal
0.4
648
Normal
0.4
482
Normal
0.4
342
Normal
0.4
738
Normal
0.4
617
Tumor
0.4
128
Normal
0.4
723
Tumor
0.4
824
Normal
0.4
858
Normal
0.4
716
Normal
0.4
534
Normal
0.4
695
Tumor
0.4
964
Normal
0.4
426
Normal
0.4
816
Normal
0.4
472
Normal
0.4
196
Normal
0.4
462
Normal
0.4
938
Normal
0.3
698
Normal
0.3
1026
Normal
0.3
228
Normal
0.3
466
Normal
0.3
914
Normal
0.3
132
Normal
0.3
278
Normal
0.3
864
Normal
0.3
696
Normal
0.3
618
Normal
0.3
111
Normal
0.3
298
Normal
0.3
912
Normal
0.3
186
Normal
0.3
944
Normal
0.3
394
Normal
0.3
172
Normal
0.3
136
Normal
0.3
484
Normal
0.3
328
Normal
0.3
922
Normal
0.3
286
Normal
0.3
818
Normal
0.3
528
Normal
0.3
568
Normal
0.3
494
Normal
0.3
952
Normal
0.3
314
Normal
0.3
258
Normal
0.3
456
Normal
0.3
488
Normal
0.3
615
Tumor
0.3
982
Normal
0.3
976
Normal
0.3
1044
Normal
0.3
1014
Normal
0.3
755
Tumor
0.3
114
Normal
0.3
1032
Normal
0.3
882
Normal
0.3
564
Normal
0.3
728
Normal
0.3
138
Normal
0.3
416
Normal
0.3
358
Normal
0.3
356
Normal
0.3
518
Normal
0.3
1046
Normal
0.3
664
Normal
0.3
257
Tumor
0.3
212
Normal
0.2
745
Tumor
0.2
364
Normal
0.2
148
Normal
0.2
452
Normal
0.2
878
Normal
0.2
516
Normal
0.2
874
Normal
0.2
866
Normal
0.2
558
Normal
0.2
366
Normal
0.2
446
Normal
0.2
272
Normal
0.2
146
Normal
0.2
1043
Tumor
0.2
956
Normal
0.2
214
Normal
0.2
428
Normal
0.2
464
Normal
0.2
926
Normal
0.2
424
Normal
0.2
778
Normal
0.2
955
Tumor
0.2
884
Normal
0.2
978
Normal
0.2
422
Normal
0.2
412
Normal
0.2
744
Normal
0.2
868
Normal
0.2
284
Normal
0.2
513
Tumor
0.2
642
Normal
0.2
514
Normal
0.2
1042
Normal
0.2
628
Normal
0.2
958
Normal
0.2
392
Normal
0.2
741
Tumor
0.2
526
Normal
0.2
432
Normal
0.2
142
Normal
0.2
572
Normal
0.2
954
Normal
0.2
332
Normal
0.2
362
Normal
0.2
376
Normal
0.2
966
Normal
0.1
686
Normal
0.1
312
Normal
0.1
1028
Normal
0.1
968
Normal
0.1
852
Normal
0.1
188
Normal
0.1
386
Normal
0.1
574
Normal
0.1
262
Normal
0.1
327
Tumor
0.1
393
Tumor
0.1
662
Normal
0.1
414
Normal
0.1
786
Normal
0.1
232
Normal
0.1
361
Tumor
0.1
1041
Tumor
0.1
137
Tumor
0.1
224
Normal
0.1
468
Normal
0.1
445
Tumor
0.1
916
Normal
0.1
396
Normal
0.1
984
Normal
0.1
147
Tumor
0.1
435
Tumor
0.1
636
Normal
0.0
915
Tumor
0.0
352
Normal
0.0
124
Normal
0.0
344
Normal
0.0
478
Normal
0.0
227
Tumor
0.0
354
Normal
0.0
554
Normal
0.0
465
Tumor
0.0
1016
Normal
0.0
517
Tumor
0.0
218
Normal
0.0
474
Normal
0.0
126
Normal
0.0
666
Normal
0.0
918
Normal
0.0
192
Normal
0.0
127
Tumor
0.0
498
Normal
0.0
268
Normal
0.0
1045
Tumor
0.0
721
Tumor
0.0
911
Tumor
0.0
492
Normal
-0.1
863
Tumor
-0.1
538
Normal
-0.1
423
Tumor
-0.1
563
Tumor
-0.1
261
Tumor
-0.1
867
Tumor
-0.1
195
Tumor
-0.1
395
Tumor
-0.1
923
Tumor
-0.1
925
Tumor
-0.1
363
Tumor
-0.1
627
Tumor
-0.1
481
Tumor
-0.1
434
Normal
-0.1
368
Normal
-0.1
112
Tumor
-0.1
391
Tumor
-0.1
125
Tumor
-0.1
1013
Tumor
-0.1
715
Tumor
-0.1
384
Normal
-0.1
515
Tumor
-0.1
685
Tumor
-0.2
873
Tumor
-0.2
815
Tumor
-0.2
953
Tumor
-0.2
571
Tumor
-0.2
553
Tumor
-0.2
524
Normal
-0.2
145
Tumor
-0.2
444
Normal
-0.2
415
Tumor
-0.2
913
Tumor
-0.2
353
Tumor
-0.2
141
Tumor
-0.2
411
Tumor
-0.2
471
Tumor
-0.2
672
Normal
-0.2
185
Tumor
-0.2
217
Tumor
-0.2
883
Tumor
-0.2
487
Tumor
-0.2
267
Tumor
-0.2
421
Tumor
-0.2
823
Tumor
-0.3
785
Tumor
-0.3
461
Tumor
-0.3
271
Tumor
-0.3
443
Tumor
-0.3
171
Tumor
-0.3
557
Tumor
-0.3
357
Tumor
-0.3
223
Tumor
-0.3
727
Tumor
-0.3
921
Tumor
-0.3
647
Tumor
-0.3
981
Tumor
-0.3
161
Tumor
-0.3
1025
Tumor
-0.3
231
Tumor
-0.3
385
Tumor
-0.3
857
Tumor
-0.3
221
Tumor
-0.4
431
Tumor
-0.4
477
Tumor
-0.4
355
Tumor
-0.4
937
Tumor
-0.4
861
Tumor
-0.4
963
Tumor
-0.4
865
Tumor
-0.4
433
Tumor
-0.4
523
Tumor
-0.4
311
Tumor
-0.4
387
Tumor
-0.4
777
Tumor
-0.4
917
Tumor
-0.4
737
Tumor
-0.4
1031
Tumor
-0.4
341
Tumor
-0.4
663
Tumor
-0.4
285
Tumor
-0.4
814
Normal
-0.4
483
Tumor
-0.4
463
Tumor
-0.4
113
Tumor
-0.4
135
Tumor
-0.5
187
Tumor
-0.5
851
Tumor
-0.5
573
Tumor
-0.5
536
Normal
-0.5
455
Tumor
-0.5
277
Tumor
-0.5
1027
Tumor
-0.5
525
Tumor
-0.5
951
Tumor
-0.5
817
Tumor
-0.5
313
Tumor
-0.5
131
Tumor
-0.5
957
Tumor
-0.5
191
Tumor
-0.5
331
Tumor
-0.5
413
Tumor
-0.5
297
Tumor
-0.5
467
Tumor
-0.5
213
Tumor
-0.5
537
Tumor
-0.5
635
Tumor
-0.6
123
Tumor
-0.6
447
Tumor
-0.6
877
Tumor
-0.6
697
Tumor
-0.6
283
Tumor
-0.6
671
Tumor
-0.6
813
Tumor
-0.6
425
Tumor
-0.6
641
Tumor
-0.6
665
Tumor
-0.6
983
Tumor
-0.6
567
Tumor
-0.6
451
Tumor
-0.6
1015
Tumor
-0.6
351
Tumor
-0.6
881
Tumor
-0.6
491
Tumor
-0.7
977
Tumor
-0.7
533
Tumor
-0.7
383
Tumor
-0.7
343
Tumor
-0.7
473
Tumor
-0.7
1021
Tumor
-0.7
713
Tumor
-0.7
975
Tumor
-0.7
943
Tumor
-0.7
375
Tumor
-0.8
367
Tumor
-0.8
211
Tumor
-0.8
965
Tumor
-0.8
527
Tumor
-0.8
427
Tumor
-0.9
493
Tumor
-0.9
724
Normal
-0.9
661
Tumor
-0.9
743
Tumor
-0.9
545
Tumor
-1.0
535
Tumor
-1.0
497
Tumor
-1.1
967
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
