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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXNB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
32.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
25.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
25.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
23.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
20.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
18.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
7.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
3.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLXNB1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.7
Number of samples
231
Samples
Sample
Description
TPM
DO45105
0 years, male, NA, stage:1, alive, 1680 days
149.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
115.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
104.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
103.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
99.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
97.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
85.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
84.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
83.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
81.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
79.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
75.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
74.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
72.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
71.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
70.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
70.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
66.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
64.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
64.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
63.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
60.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
59.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
58.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
56.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
56.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
54.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
53.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
51.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
50.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
48.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
47.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
46.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
44.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
42.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
41.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
39.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
39.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
37.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
36.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
36.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
36.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
36.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
36.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
35.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
33.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
32.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
32.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
31.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
27.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
26.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
26.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
23.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
22.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
21.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
18.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
0.8
436
Normal
0.6
618
Normal
0.6
414
Normal
0.6
426
Normal
0.6
428
Normal
0.6
1025
Tumor
0.5
944
Normal
0.5
737
Tumor
0.5
963
Tumor
0.5
131
Tumor
0.5
568
Normal
0.5
452
Normal
0.5
424
Normal
0.5
648
Normal
0.5
227
Tumor
0.5
261
Tumor
0.5
356
Normal
0.5
387
Tumor
0.5
422
Normal
0.5
112
Tumor
0.5
642
Normal
0.5
738
Normal
0.4
464
Normal
0.4
127
Tumor
0.4
824
Normal
0.4
285
Tumor
0.4
196
Normal
0.4
564
Normal
0.4
128
Normal
0.4
868
Normal
0.4
186
Normal
0.4
466
Normal
0.4
617
Tumor
0.4
636
Normal
0.4
628
Normal
0.4
162
Normal
0.4
534
Normal
0.4
698
Normal
0.4
616
Normal
0.4
344
Normal
0.4
517
Tumor
0.4
111
Normal
0.4
526
Normal
0.4
341
Tumor
0.4
376
Normal
0.4
1022
Normal
0.4
463
Tumor
0.4
271
Tumor
0.4
958
Normal
0.4
456
Normal
0.4
358
Normal
0.4
286
Normal
0.4
816
Normal
0.4
462
Normal
0.4
728
Normal
0.4
412
Normal
0.4
258
Normal
0.4
514
Normal
0.4
472
Normal
0.4
278
Normal
0.3
742
Normal
0.3
388
Normal
0.3
723
Tumor
0.3
214
Normal
0.3
921
Tumor
0.3
446
Normal
0.3
124
Normal
0.3
572
Normal
0.3
423
Tumor
0.3
222
Normal
0.3
148
Normal
0.3
332
Normal
0.3
746
Normal
0.3
474
Normal
0.3
482
Normal
0.3
866
Normal
0.3
132
Normal
0.3
396
Normal
0.3
481
Tumor
0.3
368
Normal
0.3
714
Normal
0.3
862
Normal
0.3
267
Tumor
0.3
114
Normal
0.3
468
Normal
0.3
924
Normal
0.3
232
Normal
0.3
952
Normal
0.3
473
Tumor
0.3
218
Normal
0.3
328
Normal
0.3
172
Normal
0.3
518
Normal
0.3
392
Normal
0.3
432
Normal
0.3
664
Normal
0.3
666
Normal
0.3
342
Normal
0.3
221
Tumor
0.3
968
Normal
0.3
964
Normal
0.3
662
Normal
0.3
786
Normal
0.3
366
Normal
0.3
416
Normal
0.3
488
Normal
0.3
574
Normal
0.3
231
Tumor
0.3
546
Normal
0.3
922
Normal
0.3
126
Normal
0.3
494
Normal
0.3
864
Normal
0.3
136
Normal
0.3
528
Normal
0.3
394
Normal
0.3
314
Normal
0.3
554
Normal
0.3
138
Normal
0.3
1032
Normal
0.3
938
Normal
0.2
722
Normal
0.2
918
Normal
0.2
516
Normal
0.2
354
Normal
0.2
785
Tumor
0.2
312
Normal
0.2
727
Tumor
0.2
778
Normal
0.2
484
Normal
0.2
362
Normal
0.2
1046
Normal
0.2
448
Normal
0.2
982
Normal
0.2
147
Tumor
0.2
421
Tumor
0.2
433
Tumor
0.2
912
Normal
0.2
413
Tumor
0.2
745
Tumor
0.2
1044
Normal
0.2
915
Tumor
0.2
777
Tumor
0.2
298
Normal
0.2
818
Normal
0.2
1042
Normal
0.2
465
Tumor
0.2
926
Normal
0.2
1043
Tumor
0.2
1014
Normal
0.2
171
Tumor
0.2
741
Tumor
0.2
956
Normal
0.2
1028
Normal
0.2
558
Normal
0.2
852
Normal
0.2
363
Tumor
0.2
386
Normal
0.2
364
Normal
0.2
874
Normal
0.2
1016
Normal
0.2
851
Tumor
0.2
867
Tumor
0.2
863
Tumor
0.2
716
Normal
0.2
756
Normal
0.2
976
Normal
0.2
393
Tumor
0.2
284
Normal
0.2
641
Tumor
0.2
984
Normal
0.1
686
Normal
0.1
272
Normal
0.1
142
Normal
0.1
627
Tumor
0.1
882
Normal
0.1
696
Normal
0.1
672
Normal
0.1
966
Normal
0.1
352
Normal
0.1
262
Normal
0.1
365
Tumor
0.1
188
Normal
0.1
914
Normal
0.1
965
Tumor
0.1
878
Normal
0.1
1041
Tumor
0.1
978
Normal
0.1
523
Tumor
0.1
212
Normal
0.1
113
Tumor
0.1
615
Tumor
0.1
192
Normal
0.1
884
Normal
0.1
916
Normal
0.1
353
Tumor
0.1
391
Tumor
0.1
665
Tumor
0.0
877
Tumor
0.0
477
Tumor
0.0
715
Tumor
0.0
1026
Normal
0.0
228
Normal
0.0
434
Normal
0.0
913
Tumor
0.0
411
Tumor
0.0
858
Normal
0.0
881
Tumor
0.0
954
Normal
0.0
146
Normal
0.0
123
Tumor
0.0
515
Tumor
0.0
744
Normal
0.0
395
Tumor
0.0
538
Normal
0.0
217
Tumor
0.0
277
Tumor
0.0
911
Tumor
0.0
977
Tumor
0.0
478
Normal
-0.1
268
Normal
-0.1
498
Normal
-0.1
513
Tumor
-0.1
145
Tumor
-0.1
135
Tumor
-0.1
187
Tumor
-0.1
125
Tumor
-0.1
444
Normal
-0.1
967
Tumor
-0.1
743
Tumor
-0.1
384
Normal
-0.1
981
Tumor
-0.1
567
Tumor
-0.1
492
Normal
-0.1
224
Normal
-0.1
563
Tumor
-0.1
461
Tumor
-0.1
925
Tumor
-0.1
695
Tumor
-0.1
367
Tumor
-0.1
861
Tumor
-0.2
571
Tumor
-0.2
553
Tumor
-0.2
1045
Tumor
-0.2
343
Tumor
-0.2
297
Tumor
-0.2
137
Tumor
-0.2
975
Tumor
-0.2
327
Tumor
-0.2
191
Tumor
-0.2
724
Normal
-0.2
451
Tumor
-0.2
671
Tumor
-0.2
257
Tumor
-0.2
483
Tumor
-0.2
471
Tumor
-0.2
755
Tumor
-0.2
951
Tumor
-0.2
445
Tumor
-0.2
535
Tumor
-0.2
415
Tumor
-0.2
361
Tumor
-0.2
467
Tumor
-0.2
815
Tumor
-0.3
524
Normal
-0.3
857
Tumor
-0.3
536
Normal
-0.3
223
Tumor
-0.3
955
Tumor
-0.3
1015
Tumor
-0.3
195
Tumor
-0.3
983
Tumor
-0.3
351
Tumor
-0.3
557
Tumor
-0.3
331
Tumor
-0.3
883
Tumor
-0.3
817
Tumor
-0.3
141
Tumor
-0.3
923
Tumor
-0.3
713
Tumor
-0.3
487
Tumor
-0.3
537
Tumor
-0.3
721
Tumor
-0.4
635
Tumor
-0.4
873
Tumor
-0.4
185
Tumor
-0.4
663
Tumor
-0.4
447
Tumor
-0.4
647
Tumor
-0.4
943
Tumor
-0.4
427
Tumor
-0.4
1031
Tumor
-0.4
685
Tumor
-0.4
161
Tumor
-0.4
937
Tumor
-0.4
431
Tumor
-0.4
385
Tumor
-0.5
1021
Tumor
-0.5
917
Tumor
-0.5
823
Tumor
-0.5
455
Tumor
-0.5
425
Tumor
-0.5
814
Normal
-0.5
497
Tumor
-0.5
357
Tumor
-0.5
491
Tumor
-0.6
813
Tumor
-0.6
697
Tumor
-0.6
527
Tumor
-0.6
953
Tumor
-0.6
443
Tumor
-0.6
573
Tumor
-0.7
493
Tumor
-0.7
525
Tumor
-0.7
213
Tumor
-0.7
311
Tumor
-0.7
313
Tumor
-0.7
1013
Tumor
-0.7
355
Tumor
-0.7
545
Tumor
-0.7
375
Tumor
-0.7
1027
Tumor
-0.7
383
Tumor
-0.8
865
Tumor
-0.8
283
Tumor
-0.8
533
Tumor
-0.8
957
Tumor
-0.8
661
Tumor
-1.0
211
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
