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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGRMC2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
136.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
124.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
120.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
113.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
111.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
107.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
106.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
98.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
95.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
94.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
93.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
90.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
89.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
89.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
89.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
88.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
88.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
87.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
86.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
84.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
84.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
84.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
84.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
83.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
82.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
81.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
81.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
79.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
79.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
79.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
78.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
77.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
76.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
76.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
76.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
72.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
72.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
71.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
70.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
70.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
69.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
69.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
68.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
68.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
67.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
66.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
66.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
65.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
65.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
65.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
65.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
65.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
65.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
64.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
64.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
63.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
63.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
63.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
62.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
62.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
61.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
61.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
61.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
61.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
61.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
60.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
60.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
60.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
59.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
59.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
59.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
58.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
58.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
58.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
57.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
57.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
57.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
56.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
55.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
55.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
54.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
54.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
54.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
53.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
53.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
53.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
53.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
53.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
52.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
52.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
52.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
52.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
52.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
52.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
51.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
51.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
51.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
51.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
51.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
50.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
49.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
49.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
49.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
49.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
49.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
48.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
48.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
48.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
48.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
48.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
47.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
47.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
47.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
47.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
46.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
45.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
45.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
44.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
44.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
44.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
44.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
43.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
43.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
42.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
42.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
41.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
41.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
41.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
41.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
40.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
40.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
40.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
40.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
40.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
40.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
39.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
39.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
38.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
38.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
37.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
37.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
37.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
37.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
36.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
36.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
36.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
36.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
36.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
35.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
35.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
35.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
35.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
34.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
34.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
34.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
34.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
34.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
33.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
33.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
32.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
32.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
32.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
32.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
31.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
31.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
31.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
31.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
30.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
30.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
30.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
30.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
30.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
30.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
30.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
29.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
29.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
29.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
29.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
29.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
28.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
28.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
28.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
28.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
27.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
27.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
26.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
26.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
26.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
26.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
25.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
25.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
24.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
24.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
24.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
24.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
24.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
22.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
20.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
19.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
19.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PGRMC2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.9
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
57.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
53.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
49.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
48.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
47.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
46.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
44.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
40.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
39.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
38.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
38.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
37.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
37.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
37.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
36.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
36.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
35.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
35.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
35.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
35.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
34.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
32.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
32.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
32.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
32.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
31.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
30.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
29.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
29.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
29.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
29.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
29.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
28.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
28.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
27.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
27.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
27.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
27.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
27.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
26.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
25.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
25.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
25.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
24.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
24.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
24.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
24.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
23.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
23.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
23.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
23.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
23.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
22.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
21.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
21.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
19.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
18.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
15.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
484
Normal
1.0
435
Tumor
0.9
534
Normal
0.8
857
Tumor
0.8
922
Normal
0.8
862
Normal
0.8
342
Normal
0.7
546
Normal
0.7
648
Normal
0.7
554
Normal
0.7
938
Normal
0.7
1032
Normal
0.7
1014
Normal
0.7
426
Normal
0.7
488
Normal
0.7
944
Normal
0.7
376
Normal
0.7
412
Normal
0.7
866
Normal
0.6
746
Normal
0.6
298
Normal
0.6
172
Normal
0.6
955
Tumor
0.6
481
Tumor
0.6
356
Normal
0.6
494
Normal
0.6
698
Normal
0.6
452
Normal
0.6
616
Normal
0.6
466
Normal
0.6
1026
Normal
0.6
742
Normal
0.6
314
Normal
0.6
714
Normal
0.6
636
Normal
0.6
448
Normal
0.5
388
Normal
0.5
666
Normal
0.5
132
Normal
0.5
572
Normal
0.5
424
Normal
0.5
696
Normal
0.5
926
Normal
0.5
487
Tumor
0.5
228
Normal
0.5
354
Normal
0.5
128
Normal
0.5
1022
Normal
0.5
723
Tumor
0.5
148
Normal
0.5
212
Normal
0.5
186
Normal
0.5
436
Normal
0.5
864
Normal
0.5
568
Normal
0.5
196
Normal
0.5
422
Normal
0.5
414
Normal
0.5
868
Normal
0.5
918
Normal
0.5
738
Normal
0.4
1046
Normal
0.4
744
Normal
0.4
958
Normal
0.4
392
Normal
0.4
394
Normal
0.4
162
Normal
0.4
867
Tumor
0.4
618
Normal
0.4
954
Normal
0.4
912
Normal
0.4
1044
Normal
0.4
482
Normal
0.4
462
Normal
0.4
686
Normal
0.4
472
Normal
0.4
358
Normal
0.4
278
Normal
0.4
664
Normal
0.4
136
Normal
0.4
981
Tumor
0.4
956
Normal
0.4
786
Normal
0.4
114
Normal
0.4
964
Normal
0.4
232
Normal
0.4
258
Normal
0.4
362
Normal
0.4
976
Normal
0.4
882
Normal
0.4
756
Normal
0.4
662
Normal
0.4
526
Normal
0.4
968
Normal
0.4
518
Normal
0.4
755
Tumor
0.4
952
Normal
0.4
924
Normal
0.4
284
Normal
0.4
564
Normal
0.4
982
Normal
0.4
464
Normal
0.4
261
Tumor
0.4
722
Normal
0.4
428
Normal
0.3
468
Normal
0.3
715
Tumor
0.3
368
Normal
0.3
111
Normal
0.3
1042
Normal
0.3
286
Normal
0.3
716
Normal
0.3
222
Normal
0.3
364
Normal
0.3
824
Normal
0.3
332
Normal
0.3
514
Normal
0.3
858
Normal
0.3
741
Tumor
0.3
446
Normal
0.3
852
Normal
0.3
516
Normal
0.3
911
Tumor
0.3
396
Normal
0.3
328
Normal
0.3
528
Normal
0.3
138
Normal
0.3
363
Tumor
0.3
474
Normal
0.3
142
Normal
0.3
538
Normal
0.3
878
Normal
0.3
978
Normal
0.3
984
Normal
0.3
915
Tumor
0.3
884
Normal
0.3
628
Normal
0.3
818
Normal
0.3
456
Normal
0.3
727
Tumor
0.3
478
Normal
0.3
785
Tumor
0.3
816
Normal
0.2
778
Normal
0.2
344
Normal
0.2
366
Normal
0.2
1016
Normal
0.2
728
Normal
0.2
384
Normal
0.2
695
Tumor
0.2
214
Normal
0.2
492
Normal
0.2
352
Normal
0.2
874
Normal
0.2
558
Normal
0.2
272
Normal
0.2
1028
Normal
0.2
916
Normal
0.2
124
Normal
0.2
642
Normal
0.2
137
Tumor
0.2
146
Normal
0.2
312
Normal
0.2
721
Tumor
0.2
966
Normal
0.1
416
Normal
0.1
914
Normal
0.1
861
Tumor
0.1
262
Normal
0.1
617
Tumor
0.1
685
Tumor
0.1
672
Normal
0.1
218
Normal
0.1
224
Normal
0.1
126
Normal
0.1
113
Tumor
0.1
574
Normal
0.1
432
Normal
0.1
1025
Tumor
0.0
223
Tumor
0.0
925
Tumor
0.0
524
Normal
0.0
361
Tumor
0.0
353
Tumor
0.0
445
Tumor
0.0
386
Normal
0.0
188
Normal
0.0
415
Tumor
0.0
467
Tumor
0.0
498
Normal
0.0
125
Tumor
0.0
227
Tumor
0.0
536
Normal
0.0
1041
Tumor
0.0
434
Normal
0.0
523
Tumor
0.0
171
Tumor
-0.1
413
Tumor
-0.1
965
Tumor
-0.1
393
Tumor
-0.1
161
Tumor
-0.1
537
Tumor
-0.1
647
Tumor
-0.1
557
Tumor
-0.1
713
Tumor
-0.1
553
Tumor
-0.1
327
Tumor
-0.1
571
Tumor
-0.1
145
Tumor
-0.1
431
Tumor
-0.1
268
Normal
-0.1
665
Tumor
-0.1
1027
Tumor
-0.1
285
Tumor
-0.1
473
Tumor
-0.2
533
Tumor
-0.2
195
Tumor
-0.2
365
Tumor
-0.2
851
Tumor
-0.2
267
Tumor
-0.2
444
Normal
-0.2
527
Tumor
-0.2
977
Tumor
-0.2
1015
Tumor
-0.2
465
Tumor
-0.2
192
Normal
-0.2
423
Tumor
-0.2
231
Tumor
-0.2
913
Tumor
-0.2
451
Tumor
-0.2
355
Tumor
-0.2
112
Tumor
-0.3
187
Tumor
-0.3
147
Tumor
-0.3
873
Tumor
-0.3
663
Tumor
-0.3
471
Tumor
-0.3
1045
Tumor
-0.3
477
Tumor
-0.3
463
Tumor
-0.3
123
Tumor
-0.3
341
Tumor
-0.3
963
Tumor
-0.3
923
Tumor
-0.3
433
Tumor
-0.3
127
Tumor
-0.3
697
Tumor
-0.3
141
Tumor
-0.3
745
Tumor
-0.4
491
Tumor
-0.4
517
Tumor
-0.4
881
Tumor
-0.4
185
Tumor
-0.4
641
Tumor
-0.4
421
Tumor
-0.4
351
Tumor
-0.4
387
Tumor
-0.4
937
Tumor
-0.4
191
Tumor
-0.4
357
Tumor
-0.4
513
Tumor
-0.4
943
Tumor
-0.4
277
Tumor
-0.4
217
Tumor
-0.4
1013
Tumor
-0.4
563
Tumor
-0.5
635
Tumor
-0.5
921
Tumor
-0.5
493
Tumor
-0.5
615
Tumor
-0.5
627
Tumor
-0.5
525
Tumor
-0.5
743
Tumor
-0.5
953
Tumor
-0.5
545
Tumor
-0.5
497
Tumor
-0.5
391
Tumor
-0.5
447
Tumor
-0.5
515
Tumor
-0.5
957
Tumor
-0.5
443
Tumor
-0.5
951
Tumor
-0.5
1021
Tumor
-0.5
1043
Tumor
-0.5
483
Tumor
-0.6
863
Tumor
-0.6
313
Tumor
-0.6
331
Tumor
-0.6
135
Tumor
-0.6
877
Tumor
-0.6
967
Tumor
-0.6
221
Tumor
-0.6
814
Normal
-0.6
883
Tumor
-0.6
367
Tumor
-0.6
813
Tumor
-0.6
724
Normal
-0.6
297
Tumor
-0.6
975
Tumor
-0.7
815
Tumor
-0.7
777
Tumor
-0.7
983
Tumor
-0.7
257
Tumor
-0.7
823
Tumor
-0.7
461
Tumor
-0.7
455
Tumor
-0.7
375
Tumor
-0.7
1031
Tumor
-0.7
283
Tumor
-0.8
383
Tumor
-0.8
917
Tumor
-0.8
817
Tumor
-0.8
737
Tumor
-0.8
131
Tumor
-0.8
411
Tumor
-0.8
271
Tumor
-0.8
427
Tumor
-0.9
567
Tumor
-0.9
865
Tumor
-0.9
211
Tumor
-0.9
535
Tumor
-0.9
395
Tumor
-1.0
311
Tumor
-1.0
573
Tumor
-1.1
671
Tumor
-1.1
213
Tumor
-1.1
385
Tumor
-1.1
343
Tumor
-1.2
661
Tumor
-1.3
425
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
