MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.1 nTPM
HPA Brain:38.7 nTPM
GTEx:9.1 nTPM
FANTOM5:30.5 Scaled Tags Per Million
Pig:33.8 nTPM
Mouse:23.0 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
1827 Male, age 72, unknown 43.3
2586 Male, age 75, left hemisphere 43.0
2666 Male, age 74, left hemisphere 38.0
2828 Female, age 72, unknown 34.6
2019 Male, age 18, unknown 31.2
1870 Female, age 42, unknown 28.7
2219 Male, age 76, both hemispheres 27.4
1830 Male, age 51, unknown 27.3
1833 Male, age 53, unknown 27.1
2411 Female, age 72, unknown 24.1
Dorsal raphe nucleus
nTPM: 30.0
2298 Female, age 72, unknown 45.4
2047 Male, age 72, unknown 30.4
1828 Male, age 53, unknown 29.4
2750 Male, age 76, both hemispheres 25.1
2016 Female, age 72, unknown 19.6
Inferior colliculus
nTPM: 30.4
2097 Female, age 72, unknown 41.6
1890 Male, age 53, unknown 31.5
1848 Female, age 42, unknown 26.1
2849 Male, age 72, unknown 22.4
Median raphe nucleus
nTPM: 33.4
2220 Male, age 76, midline 33.4
Periaquaductal grey, anterior
nTPM: 38.7
1947 Male, age 18, unknown 47.4
1795 Male, age 51, unknown 34.9
2502 Female, age 75, unknown 33.9
Periaquaductal grey, dorsal
nTPM: 27.1
1831 Male, age 72, unknown 35.4
1840 Male, age 53, unknown 29.1
2464 Female, age 72, unknown 21.9
2850 Male, age 76, both hemispheres 21.9
Periaquaductal grey, lateral
nTPM: 21.4
2053 Male, age 18, unknown 24.1
2140 Male, age 76, both hemispheres 21.3
2272 Male, age 74, both hemispheres 18.7
Pretectal area
nTPM: 35.2
1816 Male, age 51, unknown 49.0
1944 Female, age 72, unknown 49.0
2007 Male, age 72, unknown 46.0
1817 Female, age 42, unknown 44.8
2667 Female, age 75, unknown 40.1
1815 Male, age 53, unknown 36.2
2825 Male, age 18, unknown 29.4
2407 Male, age 75, both hemispheres 28.5
2224 Female, age 72, unknown 26.6
2273 Male, age 74, both hemispheres 19.0
2316 Male, age 76, right hemisphere 18.1
Red nucleus
nTPM: 28.0
2584 Male, age 75, left hemisphere 38.2
2588 Male, age 74, left hemisphere 36.8
1821 Female, age 72, unknown 34.9
2785 Male, age 18, unknown 30.1
2725 Female, age 75, unknown 29.6
1954 Female, age 42, unknown 29.0
1904 Male, age 53, unknown 27.8
2503 Female, age 72, unknown 26.7
2227 Male, age 72, unknown 22.8
2769 Male, age 72, unknown 22.5
2823 Male, age 76, right hemisphere 19.1
1865 Male, age 51, unknown 18.6
Substantia nigra
nTPM: 34.2
1889 Female, age 72, unknown 47.5
1916 Female, age 42, unknown 43.7
1851 Male, age 51, unknown 39.7
2665 Male, age 74, both hemispheres 37.8
1941 Male, age 53, unknown 34.0
2583 Male, age 75, right hemisphere 33.6
2241 Male, age 72, unknown 30.5
2409 Female, age 72, unknown 25.6
2699 Male, age 18, unknown 25.6
2590 Female, age 75, unknown 24.0
Superior colliculus
nTPM: 31.3
1796 Male, age 53, unknown 38.3
2668 Female, age 75, unknown 37.1
2087 Female, age 72, unknown 36.9
2664 Male, age 75, both hemispheres 35.8
1895 Male, age 76, right hemisphere 33.1
2261 Male, age 18, unknown 30.1
1839 Male, age 51, unknown 28.1
1913 Female, age 42, unknown 27.6
1995 Male, age 72, unknown 24.4
2587 Male, age 74, left hemisphere 21.6
Ventral tegmental area
nTPM: 30.4
2218 Male, age 76, both hemispheres 40.0
1915 Female, age 42, unknown 35.4
1942 Male, age 51, unknown 34.5
2410 Female, age 72, unknown 31.0
2223 Female, age 72, unknown 20.9
2021 Male, age 53, unknown 20.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.1
Samples: 139

Max nTPM: 19.9
Min nTPM: 3.6
Std nTPM: 2.6
Median nTPM: 8.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 17.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 16.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 14.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 13.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 13.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 13.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 12.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 30.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.5
FF:10158-103A5 76 years, female 30.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.1
Samples: 4

Max nTPM: 33.1
Min nTPM: 19.5
Sample A Female 33.1
Sample B Female 23.8
Sample C Male 32.0
Sample D Male 19.5
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 43.3
Min nTPM: 26.3
Sample A Female 26.3
Sample B Female 29.7
Sample C Male 43.3
Sample D Male 36.0
Periaqueductal gray
nTPM: 28.1
Samples: 3

Max nTPM: 30.7
Min nTPM: 26.8
Sample B Female 26.9
Sample C Male 30.7
Sample D Male 26.8
Superior colliculi
nTPM: 32.6
Samples: 4

Max nTPM: 41.8
Min nTPM: 26.0
Sample A Female 33.0
Sample B Female 26.0
Sample C Male 41.8
Sample D Male 29.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.0
Samples: 4

Max nTPM: 26.4
Min nTPM: 18.7
Sample A Male 18.7
Sample B Male 23.8
Sample C Female 26.4
Sample D Female 23.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
69443493 Antisense, RP_050414_04_C04, Mouse strain C57BL/6J (56 days, male) 1.8

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