We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
METAP1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
30.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
18.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
METAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
95.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
38.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
27.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
19.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
14.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
13.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.4
285
Tumor
1.3
1025
Tumor
0.8
523
Tumor
0.8
951
Tumor
0.7
743
Tumor
0.7
715
Tumor
0.7
395
Tumor
0.7
557
Tumor
0.6
537
Tumor
0.6
487
Tumor
0.6
1041
Tumor
0.6
685
Tumor
0.6
1021
Tumor
0.6
351
Tumor
0.6
661
Tumor
0.5
331
Tumor
0.5
445
Tumor
0.5
983
Tumor
0.5
367
Tumor
0.5
567
Tumor
0.4
755
Tumor
0.4
1015
Tumor
0.4
952
Normal
0.4
911
Tumor
0.4
867
Tumor
0.4
815
Tumor
0.4
977
Tumor
0.4
746
Normal
0.4
617
Tumor
0.4
925
Tumor
0.4
451
Tumor
0.4
817
Tumor
0.4
141
Tumor
0.3
137
Tumor
0.3
131
Tumor
0.3
161
Tumor
0.3
533
Tumor
0.3
1027
Tumor
0.3
921
Tumor
0.3
298
Normal
0.3
535
Tumor
0.3
342
Normal
0.3
128
Normal
0.3
525
Tumor
0.2
393
Tumor
0.2
427
Tumor
0.2
915
Tumor
0.2
196
Normal
0.2
123
Tumor
0.2
981
Tumor
0.2
554
Normal
0.2
267
Tumor
0.2
568
Normal
0.2
436
Normal
0.2
423
Tumor
0.2
572
Normal
0.2
975
Tumor
0.2
697
Tumor
0.2
635
Tumor
0.2
433
Tumor
0.2
435
Tumor
0.2
493
Tumor
0.2
861
Tumor
0.2
481
Tumor
0.2
426
Normal
0.2
738
Normal
0.2
744
Normal
0.2
647
Tumor
0.2
957
Tumor
0.2
127
Tumor
0.2
261
Tumor
0.2
741
Tumor
0.2
222
Normal
0.2
878
Normal
0.2
111
Normal
0.2
113
Tumor
0.1
213
Tumor
0.1
422
Normal
0.1
723
Tumor
0.1
375
Tumor
0.1
473
Tumor
0.1
361
Tumor
0.1
497
Tumor
0.1
727
Tumor
0.1
446
Normal
0.1
955
Tumor
0.1
314
Normal
0.1
742
Normal
0.1
966
Normal
0.1
862
Normal
0.1
616
Normal
0.1
455
Tumor
0.1
214
Normal
0.1
171
Tumor
0.1
913
Tumor
0.1
527
Tumor
0.1
1046
Normal
0.1
162
Normal
0.1
431
Tumor
0.1
232
Normal
0.1
1043
Tumor
0.1
231
Tumor
0.1
491
Tumor
0.1
564
Normal
0.1
258
Normal
0.1
484
Normal
0.1
272
Normal
0.1
452
Normal
0.1
558
Normal
0.1
434
Normal
0.1
967
Tumor
0.1
456
Normal
0.1
387
Tumor
0.1
883
Tumor
0.1
881
Tumor
0.1
538
Normal
0.0
1031
Tumor
0.0
636
Normal
0.0
618
Normal
0.0
114
Normal
0.0
545
Tumor
0.0
573
Tumor
0.0
186
Normal
0.0
136
Normal
0.0
124
Normal
0.0
823
Tumor
0.0
278
Normal
0.0
471
Tumor
0.0
482
Normal
0.0
218
Normal
0.0
488
Normal
0.0
628
Normal
0.0
463
Tumor
0.0
172
Normal
0.0
662
Normal
0.0
448
Normal
0.0
148
Normal
0.0
376
Normal
0.0
698
Normal
0.0
864
Normal
0.0
283
Tumor
0.0
963
Tumor
0.0
492
Normal
0.0
671
Tumor
0.0
642
Normal
0.0
332
Normal
0.0
138
Normal
0.0
663
Tumor
0.0
353
Tumor
0.0
211
Tumor
0.0
357
Tumor
0.0
312
Normal
0.0
132
Normal
0.0
366
Normal
0.0
648
Normal
0.0
517
Tumor
0.0
191
Tumor
0.0
664
Normal
0.0
516
Normal
0.0
813
Tumor
0.0
785
Tumor
0.0
444
Normal
0.0
534
Normal
0.0
344
Normal
0.0
343
Tumor
0.0
355
Tumor
0.0
271
Tumor
0.0
362
Normal
0.0
474
Normal
0.0
185
Tumor
0.0
221
Tumor
0.0
574
Normal
0.0
518
Normal
0.0
432
Normal
0.0
472
Normal
0.0
187
Tumor
0.0
546
Normal
0.0
396
Normal
0.0
728
Normal
0.0
413
Tumor
0.0
462
Normal
-0.1
464
Normal
-0.1
494
Normal
-0.1
311
Tumor
-0.1
483
Tumor
-0.1
964
Normal
-0.1
297
Tumor
-0.1
365
Tumor
-0.1
914
Normal
-0.1
465
Tumor
-0.1
126
Normal
-0.1
262
Normal
-0.1
874
Normal
-0.1
391
Tumor
-0.1
1032
Normal
-0.1
195
Tumor
-0.1
696
Normal
-0.1
563
Tumor
-0.1
737
Tumor
-0.1
421
Tumor
-0.1
778
Normal
-0.1
695
Tumor
-0.1
394
Normal
-0.1
526
Normal
-0.1
924
Normal
-0.1
358
Normal
-0.1
641
Tumor
-0.1
142
Normal
-0.1
327
Tumor
-0.1
937
Tumor
-0.1
686
Normal
-0.1
468
Normal
-0.1
388
Normal
-0.1
466
Normal
-0.1
553
Tumor
-0.1
724
Normal
-0.1
976
Normal
-0.1
665
Tumor
-0.1
268
Normal
-0.1
1022
Normal
-0.1
1028
Normal
-0.1
352
Normal
-0.1
385
Tumor
-0.1
217
Tumor
-0.1
228
Normal
-0.1
714
Normal
-0.1
866
Normal
-0.1
425
Tumor
-0.1
135
Tumor
-0.1
188
Normal
-0.1
386
Normal
-0.1
877
Tumor
-0.1
286
Normal
-0.1
112
Tumor
-0.1
716
Normal
-0.1
146
Normal
-0.1
467
Tumor
-0.1
524
Normal
-0.1
745
Tumor
-0.1
868
Normal
-0.1
383
Tumor
-0.1
478
Normal
-0.1
968
Normal
-0.2
428
Normal
-0.2
392
Normal
-0.2
412
Normal
-0.2
756
Normal
-0.2
786
Normal
-0.2
284
Normal
-0.2
1026
Normal
-0.2
498
Normal
-0.2
192
Normal
-0.2
1042
Normal
-0.2
447
Tumor
-0.2
277
Tumor
-0.2
721
Tumor
-0.2
1014
Normal
-0.2
461
Tumor
-0.2
926
Normal
-0.2
918
Normal
-0.2
443
Tumor
-0.2
212
Normal
-0.2
514
Normal
-0.2
851
Tumor
-0.2
956
Normal
-0.2
416
Normal
-0.2
536
Normal
-0.2
865
Tumor
-0.2
313
Tumor
-0.2
414
Normal
-0.2
356
Normal
-0.2
982
Normal
-0.2
816
Normal
-0.2
223
Tumor
-0.2
368
Normal
-0.2
515
Tumor
-0.2
328
Normal
-0.2
415
Tumor
-0.2
615
Tumor
-0.2
1013
Tumor
-0.2
912
Normal
-0.2
1044
Normal
-0.2
1016
Normal
-0.2
917
Tumor
-0.2
477
Tumor
-0.2
922
Normal
-0.3
257
Tumor
-0.3
145
Tumor
-0.3
858
Normal
-0.3
818
Normal
-0.3
354
Normal
-0.3
882
Normal
-0.3
873
Tumor
-0.3
384
Normal
-0.3
364
Normal
-0.3
528
Normal
-0.3
984
Normal
-0.3
224
Normal
-0.3
958
Normal
-0.3
424
Normal
-0.3
923
Tumor
-0.3
944
Normal
-0.3
627
Tumor
-0.3
666
Normal
-0.3
824
Normal
-0.3
147
Tumor
-0.3
722
Normal
-0.3
513
Tumor
-0.4
814
Normal
-0.4
571
Tumor
-0.4
713
Tumor
-0.4
916
Normal
-0.4
863
Tumor
-0.4
777
Tumor
-0.4
227
Tumor
-0.4
852
Normal
-0.4
938
Normal
-0.4
857
Tumor
-0.4
672
Normal
-0.5
884
Normal
-0.5
125
Tumor
-0.5
953
Tumor
-0.5
341
Tumor
-0.5
363
Tumor
-0.5
943
Tumor
-0.5
411
Tumor
-0.5
1045
Tumor
-0.5
978
Normal
-0.6
954
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
