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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIGX is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIGX is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
231
Samples
Sample
Description
TPM
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
5.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
5.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
3.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
2.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
2.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
2.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
1.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
1.8
553
Tumor
1.3
1013
Tumor
1.1
527
Tumor
1.1
314
Normal
1.1
647
Tumor
1.0
1027
Tumor
0.9
777
Tumor
0.9
332
Normal
0.9
278
Normal
0.8
481
Tumor
0.8
786
Normal
0.8
785
Tumor
0.8
817
Tumor
0.7
487
Tumor
0.7
814
Normal
0.7
435
Tumor
0.6
915
Tumor
0.6
445
Tumor
0.6
1014
Normal
0.6
545
Tumor
0.6
313
Tumor
0.6
977
Tumor
0.6
874
Normal
0.5
863
Tumor
0.5
257
Tumor
0.5
283
Tumor
0.5
858
Normal
0.5
331
Tumor
0.5
554
Normal
0.5
641
Tumor
0.5
298
Normal
0.4
312
Normal
0.4
663
Tumor
0.4
921
Tumor
0.4
261
Tumor
0.4
491
Tumor
0.4
393
Tumor
0.4
868
Normal
0.4
1032
Normal
0.4
162
Normal
0.4
671
Tumor
0.4
355
Tumor
0.4
523
Tumor
0.3
1041
Tumor
0.3
865
Tumor
0.3
342
Normal
0.3
271
Tumor
0.3
616
Normal
0.3
137
Tumor
0.3
343
Tumor
0.3
662
Normal
0.3
267
Tumor
0.3
862
Normal
0.3
455
Tumor
0.3
978
Normal
0.3
432
Normal
0.3
127
Tumor
0.3
866
Normal
0.3
494
Normal
0.3
356
Normal
0.3
446
Normal
0.3
212
Normal
0.3
451
Tumor
0.3
984
Normal
0.3
813
Tumor
0.3
1031
Tumor
0.3
755
Tumor
0.3
518
Normal
0.3
923
Tumor
0.3
224
Normal
0.2
357
Tumor
0.2
864
Normal
0.2
412
Normal
0.2
297
Tumor
0.2
227
Tumor
0.2
223
Tumor
0.2
852
Normal
0.2
498
Normal
0.2
364
Normal
0.2
467
Tumor
0.2
528
Normal
0.2
388
Normal
0.2
484
Normal
0.2
546
Normal
0.2
311
Tumor
0.2
436
Normal
0.2
672
Normal
0.2
456
Normal
0.2
468
Normal
0.2
515
Tumor
0.2
284
Normal
0.2
472
Normal
0.2
396
Normal
0.2
272
Normal
0.2
411
Tumor
0.2
394
Normal
0.2
138
Normal
0.2
666
Normal
0.2
572
Normal
0.2
172
Normal
0.2
861
Tumor
0.2
746
Normal
0.2
434
Normal
0.2
478
Normal
0.2
444
Normal
0.2
538
Normal
0.2
463
Tumor
0.1
433
Tumor
0.1
648
Normal
0.1
564
Normal
0.1
926
Normal
0.1
286
Normal
0.1
344
Normal
0.1
818
Normal
0.1
258
Normal
0.1
231
Tumor
0.1
534
Normal
0.1
415
Tumor
0.1
1042
Normal
0.1
916
Normal
0.1
568
Normal
0.1
483
Tumor
0.1
186
Normal
0.1
146
Normal
0.1
385
Tumor
0.1
145
Tumor
0.1
573
Tumor
0.1
228
Normal
0.1
136
Normal
0.1
135
Tumor
0.1
328
Normal
0.1
492
Normal
0.1
526
Normal
0.1
642
Normal
0.1
918
Normal
0.1
268
Normal
0.1
497
Tumor
0.1
488
Normal
0.1
493
Tumor
0.1
533
Tumor
0.1
211
Tumor
0.1
277
Tumor
0.1
516
Normal
0.1
664
Normal
0.1
981
Tumor
0.1
132
Normal
0.1
474
Normal
0.1
416
Normal
0.1
465
Tumor
0.0
431
Tumor
0.0
558
Normal
0.0
358
Normal
0.0
386
Normal
0.0
917
Tumor
0.0
142
Normal
0.0
1022
Normal
0.0
392
Normal
0.0
1016
Normal
0.0
111
Normal
0.0
262
Normal
0.0
232
Normal
0.0
141
Tumor
0.0
815
Tumor
0.0
341
Tumor
0.0
125
Tumor
0.0
816
Normal
0.0
391
Tumor
0.0
665
Tumor
0.0
354
Normal
-0.1
466
Normal
-0.1
661
Tumor
-0.1
922
Normal
-0.1
617
Tumor
-0.1
557
Tumor
-0.1
464
Normal
-0.1
352
Normal
-0.1
131
Tumor
-0.1
443
Tumor
-0.1
627
Tumor
-0.1
756
Normal
-0.1
867
Tumor
-0.1
524
Normal
-0.1
628
Normal
-0.1
618
Normal
-0.1
363
Tumor
-0.1
567
Tumor
-0.1
452
Normal
-0.1
482
Normal
-0.1
327
Tumor
-0.1
873
Tumor
-0.2
537
Tumor
-0.2
525
Tumor
-0.2
851
Tumor
-0.2
983
Tumor
-0.2
473
Tumor
-0.2
124
Normal
-0.2
571
Tumor
-0.2
615
Tumor
-0.2
778
Normal
-0.2
285
Tumor
-0.2
823
Tumor
-0.2
353
Tumor
-0.3
514
Normal
-0.3
982
Normal
-0.3
574
Normal
-0.3
563
Tumor
-0.3
113
Tumor
-0.3
1021
Tumor
-0.3
1015
Tumor
-0.3
477
Tumor
-0.3
395
Tumor
-0.3
1028
Normal
-0.3
1026
Normal
-0.3
462
Normal
-0.3
924
Normal
-0.3
471
Tumor
-0.3
351
Tumor
-0.3
513
Tumor
-0.3
148
Normal
-0.4
387
Tumor
-0.4
824
Normal
-0.4
114
Normal
-0.5
112
Tumor
-0.5
636
Normal
-0.5
925
Tumor
-0.6
126
Normal
-0.6
517
Tumor
-0.7
171
Tumor
-0.7
123
Tumor
-0.7
147
Tumor
-0.8
635
Tumor
-0.8
1025
Tumor
-1.0
461
Tumor
-1.1
745
Tumor
-1.1
128
Normal
-1.1
187
Tumor
-1.3
161
Tumor
-1.6
185
Tumor
-1.7
188
Normal
-2.0
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
975
Tumor
N/A
976
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
741
Tumor
N/A
742
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
1045
Tumor
N/A
744
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
