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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKCD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
24.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
8.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRKCD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.8
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
65.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
32.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
28.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
16.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
3.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
661
Tumor
1.5
385
Tumor
1.1
211
Tumor
1.1
125
Tumor
1.1
917
Tumor
1.0
367
Tumor
1.0
951
Tumor
1.0
983
Tumor
0.9
535
Tumor
0.8
311
Tumor
0.8
671
Tumor
0.8
641
Tumor
0.8
363
Tumor
0.7
877
Tumor
0.7
491
Tumor
0.7
343
Tumor
0.6
285
Tumor
0.6
724
Normal
0.6
391
Tumor
0.6
851
Tumor
0.6
434
Normal
0.6
217
Tumor
0.5
221
Tumor
0.5
455
Tumor
0.5
413
Tumor
0.5
283
Tumor
0.5
617
Tumor
0.5
463
Tumor
0.5
375
Tumor
0.4
967
Tumor
0.4
813
Tumor
0.4
925
Tumor
0.4
883
Tumor
0.4
966
Normal
0.4
537
Tumor
0.4
257
Tumor
0.4
471
Tumor
0.4
213
Tumor
0.4
553
Tumor
0.4
1043
Tumor
0.4
135
Tumor
0.4
467
Tumor
0.4
1031
Tumor
0.3
492
Normal
0.3
192
Normal
0.3
943
Tumor
0.3
231
Tumor
0.3
271
Tumor
0.3
567
Tumor
0.3
817
Tumor
0.3
525
Tumor
0.3
975
Tumor
0.3
262
Normal
0.3
444
Normal
0.3
351
Tumor
0.2
536
Normal
0.2
411
Tumor
0.2
331
Tumor
0.2
814
Normal
0.2
195
Tumor
0.2
268
Normal
0.2
387
Tumor
0.2
141
Tumor
0.2
713
Tumor
0.2
881
Tumor
0.2
663
Tumor
0.2
421
Tumor
0.2
538
Normal
0.2
563
Tumor
0.2
815
Tumor
0.2
188
Normal
0.2
545
Tumor
0.1
185
Tumor
0.1
865
Tumor
0.1
383
Tumor
0.1
823
Tumor
0.1
447
Tumor
0.1
395
Tumor
0.1
227
Tumor
0.1
963
Tumor
0.1
695
Tumor
0.1
921
Tumor
0.1
191
Tumor
0.1
272
Normal
0.1
126
Normal
0.1
647
Tumor
0.1
451
Tumor
0.1
473
Tumor
0.1
267
Tumor
0.1
715
Tumor
0.1
874
Normal
0.1
478
Normal
0.1
386
Normal
0.1
384
Normal
0.0
415
Tumor
0.0
224
Normal
0.0
461
Tumor
0.0
483
Tumor
0.0
978
Normal
0.0
366
Normal
0.0
328
Normal
0.0
127
Tumor
0.0
427
Tumor
0.0
223
Tumor
0.0
498
Normal
0.0
916
Normal
0.0
976
Normal
0.0
362
Normal
0.0
365
Tumor
0.0
524
Normal
0.0
672
Normal
0.0
697
Tumor
0.0
952
Normal
0.0
816
Normal
0.0
313
Tumor
0.0
355
Tumor
0.0
468
Normal
0.0
277
Tumor
0.0
138
Normal
0.0
146
Normal
0.0
866
Normal
0.0
147
Tumor
0.0
187
Tumor
0.0
721
Tumor
0.0
685
Tumor
0.0
124
Normal
-0.1
852
Normal
-0.1
464
Normal
-0.1
861
Tumor
-0.1
142
Normal
-0.1
284
Normal
-0.1
862
Normal
-0.1
664
Normal
-0.1
953
Tumor
-0.1
297
Tumor
-0.1
778
Normal
-0.1
738
Normal
-0.1
573
Tumor
-0.1
352
Normal
-0.1
662
Normal
-0.1
858
Normal
-0.1
428
Normal
-0.1
628
Normal
-0.1
737
Tumor
-0.1
743
Tumor
-0.1
1015
Tumor
-0.1
493
Tumor
-0.1
443
Tumor
-0.1
727
Tumor
-0.1
1013
Tumor
-0.1
1042
Normal
-0.1
432
Normal
-0.1
435
Tumor
-0.1
456
Normal
-0.1
161
Tumor
-0.1
416
Normal
-0.1
914
Normal
-0.1
474
Normal
-0.1
368
Normal
-0.1
716
Normal
-0.1
956
Normal
-0.1
258
Normal
-0.1
824
Normal
-0.2
755
Tumor
-0.2
494
Normal
-0.2
212
Normal
-0.2
298
Normal
-0.2
433
Tumor
-0.2
137
Tumor
-0.2
1046
Normal
-0.2
424
Normal
-0.2
364
Normal
-0.2
878
Normal
-0.2
1016
Normal
-0.2
1044
Normal
-0.2
516
Normal
-0.2
396
Normal
-0.2
533
Tumor
-0.2
423
Tumor
-0.2
232
Normal
-0.2
466
Normal
-0.2
344
Normal
-0.2
472
Normal
-0.2
818
Normal
-0.2
864
Normal
-0.2
136
Normal
-0.2
868
Normal
-0.2
984
Normal
-0.2
261
Tumor
-0.2
361
Tumor
-0.2
218
Normal
-0.2
465
Tumor
-0.2
278
Normal
-0.2
546
Normal
-0.2
686
Normal
-0.2
332
Normal
-0.2
923
Tumor
-0.2
462
Normal
-0.2
412
Normal
-0.2
111
Normal
-0.2
341
Tumor
-0.2
312
Normal
-0.2
666
Normal
-0.2
446
Normal
-0.2
452
Normal
-0.2
414
Normal
-0.2
393
Tumor
-0.2
422
Normal
-0.2
857
Tumor
-0.2
955
Tumor
-0.2
342
Normal
-0.2
1028
Normal
-0.2
477
Tumor
-0.2
938
Normal
-0.2
487
Tumor
-0.2
722
Normal
-0.2
744
Normal
-0.2
557
Tumor
-0.2
528
Normal
-0.2
354
Normal
-0.2
356
Normal
-0.2
448
Normal
-0.3
954
Normal
-0.3
648
Normal
-0.3
214
Normal
-0.3
982
Normal
-0.3
554
Normal
-0.3
574
Normal
-0.3
867
Tumor
-0.3
558
Normal
-0.3
534
Normal
-0.3
482
Normal
-0.3
394
Normal
-0.3
1026
Normal
-0.3
926
Normal
-0.3
882
Normal
-0.3
228
Normal
-0.3
132
Normal
-0.3
145
Tumor
-0.3
968
Normal
-0.3
964
Normal
-0.3
728
Normal
-0.3
376
Normal
-0.3
515
Tumor
-0.3
786
Normal
-0.3
918
Normal
-0.3
358
Normal
-0.3
958
Normal
-0.3
518
Normal
-0.3
665
Tumor
-0.3
426
Normal
-0.3
392
Normal
-0.3
965
Tumor
-0.3
913
Tumor
-0.3
114
Normal
-0.3
944
Normal
-0.3
388
Normal
-0.3
514
Normal
-0.3
873
Tumor
-0.3
618
Normal
-0.4
742
Normal
-0.4
286
Normal
-0.4
1025
Tumor
-0.4
162
Normal
-0.4
314
Normal
-0.4
196
Normal
-0.4
353
Tumor
-0.4
526
Normal
-0.4
488
Normal
-0.4
756
Normal
-0.4
977
Tumor
-0.4
497
Tumor
-0.4
1027
Tumor
-0.4
642
Normal
-0.4
723
Tumor
-0.4
924
Normal
-0.4
222
Normal
-0.4
884
Normal
-0.4
1021
Tumor
-0.4
172
Normal
-0.4
746
Normal
-0.4
131
Tumor
-0.4
171
Tumor
-0.4
1032
Normal
-0.4
436
Normal
-0.4
714
Normal
-0.4
698
Normal
-0.5
777
Tumor
-0.5
572
Normal
-0.5
937
Tumor
-0.5
915
Tumor
-0.5
1045
Tumor
-0.5
863
Tumor
-0.5
922
Normal
-0.5
1022
Normal
-0.5
741
Tumor
-0.5
616
Normal
-0.5
785
Tumor
-0.5
148
Normal
-0.5
1041
Tumor
-0.5
571
Tumor
-0.5
696
Normal
-0.5
1014
Normal
-0.5
128
Normal
-0.5
357
Tumor
-0.5
517
Tumor
-0.5
513
Tumor
-0.5
123
Tumor
-0.5
186
Normal
-0.6
527
Tumor
-0.6
327
Tumor
-0.6
113
Tumor
-0.6
112
Tumor
-0.6
564
Normal
-0.6
484
Normal
-0.6
431
Tumor
-0.6
957
Tumor
-0.6
481
Tumor
-0.6
568
Normal
-0.7
636
Normal
-0.7
627
Tumor
-0.7
911
Tumor
-0.7
912
Normal
-0.7
445
Tumor
-0.8
523
Tumor
-0.8
615
Tumor
-0.9
745
Tumor
-0.9
981
Tumor
-0.9
425
Tumor
-1.0
635
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
