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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
57.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
57.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
48.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
47.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
47.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
46.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
46.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
44.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
43.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
40.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
33.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
31.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
30.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
30.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
29.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
27.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
26.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
26.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
25.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
25.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
25.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
24.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
24.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
23.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
23.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
23.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
20.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
19.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
19.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
18.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
18.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
17.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
12.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
12.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFC4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.4
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
73.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
49.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
47.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
43.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
41.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
40.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
39.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
38.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
28.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
22.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
22.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.7
497
Tumor
1.7
957
Tumor
1.6
411
Tumor
1.5
743
Tumor
1.4
965
Tumor
1.4
865
Tumor
1.4
313
Tumor
1.3
1013
Tumor
1.2
523
Tumor
1.2
355
Tumor
1.2
695
Tumor
1.1
921
Tumor
1.1
877
Tumor
1.1
351
Tumor
1.1
923
Tumor
1.0
983
Tumor
1.0
413
Tumor
1.0
943
Tumor
1.0
571
Tumor
0.9
391
Tumor
0.9
277
Tumor
0.9
161
Tumor
0.8
663
Tumor
0.8
951
Tumor
0.8
545
Tumor
0.8
131
Tumor
0.8
537
Tumor
0.8
671
Tumor
0.7
661
Tumor
0.7
427
Tumor
0.7
953
Tumor
0.7
737
Tumor
0.7
727
Tumor
0.7
357
Tumor
0.7
487
Tumor
0.7
285
Tumor
0.6
1031
Tumor
0.6
375
Tumor
0.6
493
Tumor
0.6
647
Tumor
0.6
473
Tumor
0.6
211
Tumor
0.6
112
Tumor
0.6
517
Tumor
0.6
463
Tumor
0.5
535
Tumor
0.5
665
Tumor
0.5
813
Tumor
0.5
467
Tumor
0.5
367
Tumor
0.5
724
Normal
0.5
477
Tumor
0.5
1021
Tumor
0.5
937
Tumor
0.5
443
Tumor
0.4
527
Tumor
0.4
341
Tumor
0.4
1025
Tumor
0.4
135
Tumor
0.4
425
Tumor
0.4
533
Tumor
0.4
641
Tumor
0.4
343
Tumor
0.4
817
Tumor
0.4
431
Tumor
0.4
471
Tumor
0.4
815
Tumor
0.4
385
Tumor
0.4
491
Tumor
0.3
465
Tumor
0.3
331
Tumor
0.3
525
Tumor
0.3
363
Tumor
0.3
125
Tumor
0.3
227
Tumor
0.3
977
Tumor
0.3
553
Tumor
0.3
231
Tumor
0.3
873
Tumor
0.3
141
Tumor
0.2
297
Tumor
0.2
271
Tumor
0.2
283
Tumor
0.2
567
Tumor
0.2
1027
Tumor
0.2
713
Tumor
0.2
445
Tumor
0.2
213
Tumor
0.2
883
Tumor
0.2
393
Tumor
0.2
383
Tumor
0.2
433
Tumor
0.2
267
Tumor
0.2
745
Tumor
0.2
1043
Tumor
0.1
715
Tumor
0.1
814
Normal
0.1
123
Tumor
0.1
127
Tumor
0.1
387
Tumor
0.1
361
Tumor
0.1
635
Tumor
0.1
1045
Tumor
0.1
573
Tumor
0.1
755
Tumor
0.1
171
Tumor
0.1
563
Tumor
0.1
925
Tumor
0.0
697
Tumor
0.0
435
Tumor
0.0
881
Tumor
0.0
423
Tumor
0.0
447
Tumor
0.0
975
Tumor
0.0
685
Tumor
0.0
257
Tumor
0.0
187
Tumor
0.0
223
Tumor
0.0
513
Tumor
0.0
1041
Tumor
-0.1
311
Tumor
-0.1
777
Tumor
-0.1
963
Tumor
-0.1
221
Tumor
-0.1
823
Tumor
-0.1
741
Tumor
-0.1
483
Tumor
-0.1
261
Tumor
-0.1
861
Tumor
-0.1
455
Tumor
-0.1
421
Tumor
-0.2
147
Tumor
-0.2
185
Tumor
-0.2
395
Tumor
-0.2
145
Tumor
-0.2
863
Tumor
-0.2
557
Tumor
-0.2
515
Tumor
-0.2
981
Tumor
-0.3
913
Tumor
-0.3
137
Tumor
-0.3
217
Tumor
-0.3
498
Normal
-0.3
917
Tumor
-0.3
857
Tumor
-0.3
851
Tumor
-0.3
353
Tumor
-0.3
966
Normal
-0.3
911
Tumor
-0.3
451
Tumor
-0.3
867
Tumor
-0.4
915
Tumor
-0.4
461
Tumor
-0.4
224
Normal
-0.4
721
Tumor
-0.4
354
Normal
-0.4
1015
Tumor
-0.4
314
Normal
-0.4
415
Tumor
-0.4
978
Normal
-0.4
278
Normal
-0.4
352
Normal
-0.4
365
Tumor
-0.4
298
Normal
-0.4
984
Normal
-0.4
944
Normal
-0.4
113
Tumor
-0.4
312
Normal
-0.4
342
Normal
-0.4
188
Normal
-0.4
1014
Normal
-0.4
916
Normal
-0.4
212
Normal
-0.4
191
Tumor
-0.4
344
Normal
-0.4
386
Normal
-0.4
488
Normal
-0.4
128
Normal
-0.5
785
Tumor
-0.5
536
Normal
-0.5
492
Normal
-0.5
358
Normal
-0.5
714
Normal
-0.5
268
Normal
-0.5
384
Normal
-0.5
262
Normal
-0.5
924
Normal
-0.5
716
Normal
-0.5
286
Normal
-0.5
615
Tumor
-0.5
954
Normal
-0.5
922
Normal
-0.5
195
Tumor
-0.5
868
Normal
-0.5
394
Normal
-0.5
192
Normal
-0.5
434
Normal
-0.5
955
Tumor
-0.5
272
Normal
-0.5
662
Normal
-0.5
114
Normal
-0.5
481
Tumor
-0.5
364
Normal
-0.5
918
Normal
-0.5
464
Normal
-0.5
524
Normal
-0.5
756
Normal
-0.5
148
Normal
-0.5
494
Normal
-0.5
126
Normal
-0.5
938
Normal
-0.5
1032
Normal
-0.5
516
Normal
-0.5
874
Normal
-0.6
388
Normal
-0.6
284
Normal
-0.6
864
Normal
-0.6
956
Normal
-0.6
664
Normal
-0.6
484
Normal
-0.6
648
Normal
-0.6
926
Normal
-0.6
958
Normal
-0.6
162
Normal
-0.6
627
Tumor
-0.6
332
Normal
-0.6
968
Normal
-0.6
362
Normal
-0.6
534
Normal
-0.6
686
Normal
-0.6
232
Normal
-0.6
376
Normal
-0.6
124
Normal
-0.6
186
Normal
-0.6
1016
Normal
-0.6
672
Normal
-0.6
617
Tumor
-0.6
1028
Normal
-0.6
228
Normal
-0.6
778
Normal
-0.6
738
Normal
-0.6
572
Normal
-0.6
564
Normal
-0.6
328
Normal
-0.6
142
Normal
-0.6
428
Normal
-0.6
468
Normal
-0.6
696
Normal
-0.6
728
Normal
-0.6
111
Normal
-0.6
466
Normal
-0.6
392
Normal
-0.6
866
Normal
-0.6
478
Normal
-0.6
722
Normal
-0.6
538
Normal
-0.6
446
Normal
-0.6
514
Normal
-0.6
1026
Normal
-0.6
546
Normal
-0.6
518
Normal
-0.6
526
Normal
-0.6
146
Normal
-0.6
818
Normal
-0.6
746
Normal
-0.6
982
Normal
-0.6
196
Normal
-0.6
858
Normal
-0.6
138
Normal
-0.7
456
Normal
-0.7
258
Normal
-0.7
558
Normal
-0.7
878
Normal
-0.7
976
Normal
-0.7
472
Normal
-0.7
172
Normal
-0.7
416
Normal
-0.7
964
Normal
-0.7
424
Normal
-0.7
723
Tumor
-0.7
862
Normal
-0.7
1042
Normal
-0.7
1044
Normal
-0.7
422
Normal
-0.7
448
Normal
-0.7
698
Normal
-0.7
444
Normal
-0.7
474
Normal
-0.7
952
Normal
-0.7
327
Tumor
-0.7
396
Normal
-0.7
914
Normal
-0.7
412
Normal
-0.7
574
Normal
-0.7
482
Normal
-0.7
136
Normal
-0.7
884
Normal
-0.7
666
Normal
-0.7
222
Normal
-0.7
368
Normal
-0.7
742
Normal
-0.7
366
Normal
-0.7
356
Normal
-0.7
568
Normal
-0.7
1022
Normal
-0.7
1046
Normal
-0.7
852
Normal
-0.7
528
Normal
-0.7
912
Normal
-0.7
816
Normal
-0.7
426
Normal
-0.8
436
Normal
-0.8
554
Normal
-0.8
218
Normal
-0.8
414
Normal
-0.8
132
Normal
-0.8
462
Normal
-0.8
214
Normal
-0.8
432
Normal
-0.8
882
Normal
-0.8
786
Normal
-0.8
616
Normal
-0.8
636
Normal
-0.9
628
Normal
-0.9
452
Normal
-0.9
824
Normal
-0.9
618
Normal
-0.9
642
Normal
-1.0
744
Normal
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
