MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:28.7 nTPM
GTEx:13.8 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Pig:6.7 nTPM
Mouse:6.5 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 28.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
2666 Male, age 74, left hemisphere 32.9
2828 Female, age 72, unknown 25.4
2586 Male, age 75, left hemisphere 21.4
1827 Male, age 72, unknown 20.7
2411 Female, age 72, unknown 19.7
1870 Female, age 42, unknown 18.8
2219 Male, age 76, both hemispheres 18.3
1833 Male, age 53, unknown 15.3
1830 Male, age 51, unknown 14.4
2019 Male, age 18, unknown 6.0
Dorsal raphe nucleus
nTPM: 21.5
2047 Male, age 72, unknown 29.2
2298 Female, age 72, unknown 22.5
1828 Male, age 53, unknown 21.6
2016 Female, age 72, unknown 19.6
2750 Male, age 76, both hemispheres 14.9
Inferior colliculus
nTPM: 15.9
2849 Male, age 72, unknown 23.2
1890 Male, age 53, unknown 16.3
1848 Female, age 42, unknown 13.2
2097 Female, age 72, unknown 11.1
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Periaquaductal grey, anterior
nTPM: 28.7
1947 Male, age 18, unknown 36.4
1795 Male, age 51, unknown 28.9
2502 Female, age 75, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 22.7
1840 Male, age 53, unknown 33.2
2850 Male, age 76, both hemispheres 22.0
2464 Female, age 72, unknown 20.8
1831 Male, age 72, unknown 14.9
Periaquaductal grey, lateral
nTPM: 21.6
2140 Male, age 76, both hemispheres 25.2
2053 Male, age 18, unknown 24.3
2272 Male, age 74, both hemispheres 15.4
Pretectal area
nTPM: 16.5
2825 Male, age 18, unknown 27.7
2224 Female, age 72, unknown 24.8
2667 Female, age 75, unknown 18.0
1816 Male, age 51, unknown 17.1
1944 Female, age 72, unknown 16.7
2316 Male, age 76, right hemisphere 15.8
1817 Female, age 42, unknown 15.3
2273 Male, age 74, both hemispheres 15.3
1815 Male, age 53, unknown 11.5
2007 Male, age 72, unknown 11.2
2407 Male, age 75, both hemispheres 8.3
Red nucleus
nTPM: 14.5
2725 Female, age 75, unknown 19.2
2588 Male, age 74, left hemisphere 19.1
2227 Male, age 72, unknown 16.7
2769 Male, age 72, unknown 16.3
2503 Female, age 72, unknown 15.1
2823 Male, age 76, right hemisphere 14.7
2584 Male, age 75, left hemisphere 14.2
1954 Female, age 42, unknown 13.9
1821 Female, age 72, unknown 13.6
1904 Male, age 53, unknown 13.1
1865 Male, age 51, unknown 11.6
2785 Male, age 18, unknown 6.2
Substantia nigra
nTPM: 28.3
2665 Male, age 74, both hemispheres 49.6
2699 Male, age 18, unknown 48.2
1916 Female, age 42, unknown 32.8
2241 Male, age 72, unknown 28.0
1851 Male, age 51, unknown 26.9
2590 Female, age 75, unknown 23.5
2409 Female, age 72, unknown 22.2
2583 Male, age 75, right hemisphere 17.8
1941 Male, age 53, unknown 17.4
1889 Female, age 72, unknown 16.3
Superior colliculus
nTPM: 16.0
2664 Male, age 75, both hemispheres 20.9
1796 Male, age 53, unknown 19.9
2261 Male, age 18, unknown 19.4
1839 Male, age 51, unknown 18.1
2087 Female, age 72, unknown 16.9
2587 Male, age 74, left hemisphere 16.9
2668 Female, age 75, unknown 15.1
1895 Male, age 76, right hemisphere 14.9
1913 Female, age 42, unknown 9.7
1995 Male, age 72, unknown 8.8
Ventral tegmental area
nTPM: 20.5
2021 Male, age 53, unknown 24.6
1915 Female, age 42, unknown 23.5
1942 Male, age 51, unknown 22.8
2410 Female, age 72, unknown 20.2
2218 Male, age 76, both hemispheres 17.6
2223 Female, age 72, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 139

Max nTPM: 52.6
Min nTPM: 1.1
Std nTPM: 7.7
Median nTPM: 12.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 52.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 37.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 32.8
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 30.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 29.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 26.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 25.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 25.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 24.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.7
Samples: 4

Max nTPM: 10.8
Min nTPM: 4.5
Sample A Female 6.1
Sample B Female 10.8
Sample C Male 5.3
Sample D Male 4.5
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.5
Sample A Female 3.7
Sample B Female 3.4
Sample C Male 4.6
Sample D Male 2.5
Periaqueductal gray
nTPM: 2.6
Samples: 3

Max nTPM: 2.7
Min nTPM: 2.5
Sample B Female 2.5
Sample C Male 2.7
Sample D Male 2.5
Superior colliculi
nTPM: 6.1
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.2
Sample A Female 8.8
Sample B Female 6.2
Sample C Male 4.2
Sample D Male 5.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 5.2
Sample A Male 8.4
Sample B Male 5.8
Sample C Female 5.2
Sample D Female 6.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69289093 Antisense, RP_050407_02_D08, Mouse strain C57BL/6J (56 days, male) 0.2

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