Expression of SMIM12 in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

SMIM12 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 32.48

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average TPM

27.7

Number of samples

362

Samples

Sample	Description	TPM
TCGA-CC-A5UE-01A	0 years, male, asian, stage:Stage IIIB, dead, 272 days	65.1
TCGA-G3-A7M9-01A	0 years, male, white, stage:Stage IIIB, dead, 56 days	61.8
TCGA-2Y-A9H2-01A	0 years, female, white, stage:Stage I, alive, 1731 days	59.3
TCGA-NI-A4U2-01A	0 years, male, white, stage:Stage IIIA, dead, 1791 days	59.0
TCGA-BC-A217-01A	0 years, female, white, stage:Stage II, dead, 1397 days	56.8
TCGA-DD-A1EB-01A	0 years, female, stage:Stage I, alive, 2017 days	56.5
TCGA-G3-A7M8-01A	0 years, male, asian, stage:Stage I, alive, 430 days	54.8
TCGA-5R-AA1C-01A	0 years, male, white, stage:Stage II, alive, 520 days	54.2
TCGA-G3-A5SI-01A	0 years, male, asian, stage:Stage II, dead, 768 days	54.1
TCGA-DD-A1EC-01A	0 years, female, white, stage:Stage I, alive, 602 days	54.0
TCGA-DD-A73C-01A	0 years, female, white, stage:Stage IIIA, alive, 701 days	53.4
TCGA-G3-A7M7-01A	0 years, male, white, stage:Stage I, alive, 361 days	53.0
TCGA-DD-AADL-01A	0 years, male, asian, stage:Stage I, alive, 636 days	51.0
TCGA-MI-A75I-01A	0 years, male, black or african american, stage:'--, alive, 630 days	50.6
TCGA-UB-A7MD-01A	0 years, male, black or african american, stage:Stage I, dead, 52 days	49.9
TCGA-DD-A114-01A	0 years, male, black or african american, stage:Stage II, dead, 1149 days	49.3
TCGA-DD-A1EL-01A	0 years, male, black or african american, stage:Stage II, dead, 415 days	48.4
TCGA-ED-A7PX-01A	0 years, female, asian, stage:Stage II, alive, 6 days	48.0
TCGA-G3-A25T-01A	0 years, female, white, stage:Stage IIIA, alive, 1553 days	47.7
TCGA-CC-A3MA-01A	0 years, male, asian, stage:Stage IIIA, dead, 303 days	47.3
TCGA-UB-A7MB-01A	0 years, male, white, stage:Stage II, alive, 601 days	47.1
TCGA-G3-A25U-01A	0 years, female, asian, stage:Stage I, alive, 1636 days	47.0
TCGA-CC-5263-01A	0 years, male, asian, stage:Stage IIIA, dead, 129 days	46.9
TCGA-RC-A7SB-01A	0 years, male, asian, stage:Stage II, alive, 588 days	46.6
TCGA-DD-A3A4-01A	0 years, male, white, stage:Stage IIIA, dead, 612 days	46.4
TCGA-DD-A3A1-01A	0 years, male, stage:Stage IIIA, dead, 233 days	46.2
TCGA-MR-A520-01A	0 years, male, white, stage:Stage I, alive, 229 days	44.8
TCGA-DD-A1EK-01A	0 years, female, white, stage:Stage IVB, dead, 558 days	44.5
TCGA-CC-A3M9-01A	0 years, male, asian, stage:Stage IIIA, dead, 300 days	44.4
TCGA-BC-A110-01A	0 years, female, black or african american, stage:'--, dead, 2116 days	44.3
TCGA-G3-AAV7-01A	0 years, male, asian, stage:Stage II, alive, 361 days	44.3
TCGA-G3-A3CK-01A	0 years, male, asian, stage:Stage I, alive, 585 days	44.0
TCGA-CC-5260-01A	0 years, female, asian, stage:Stage IIIC, dead, 87 days	43.6
TCGA-CC-5262-01A	0 years, male, asian, stage:Stage IIIC, dead, 103 days	43.6
TCGA-G3-AAV4-01A	0 years, female, white, stage:Stage I, dead, 27 days	43.5
TCGA-GJ-A9DB-01A	0 years, male, white, stage:Stage I, dead, 67 days	43.3
TCGA-HP-A5N0-01A	0 years, female, stage:'--, dead, 752 days	42.8
TCGA-BC-A10U-01A	0 years, male, white, stage:'--, dead, 837 days	42.7
TCGA-T1-A6J8-01A	0 years, male, white, stage:'--, alive, 23 days	42.4
TCGA-G3-A25Y-01A	0 years, female, asian, stage:Stage I, dead, 452 days	42.3
TCGA-ZS-A9CD-01A	0 years, male, white, stage:Stage II, dead, 1386 days	42.2
TCGA-CC-A1HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 101 days	42.2
TCGA-DD-AACF-01A	0 years, male, asian, stage:Stage I, dead, 365 days	42.1
TCGA-FV-A3R2-01A	0 years, male, white, stage:Stage I, dead, 194 days	42.1
TCGA-DD-AACU-01A	0 years, male, asian, stage:Stage I, alive, 1567 days	42.0
TCGA-ED-A459-01A	0 years, male, asian, stage:Stage II, alive, 910 days	41.6
TCGA-DD-AAE2-01A	0 years, male, asian, stage:Stage I, alive, 638 days	41.6
TCGA-RC-A6M6-01A	0 years, male, white, stage:Stage II, alive, 9 days	41.4
TCGA-QA-A7B7-01A	0 years, male, black or african american, stage:Stage II, alive, 94 days	41.3
TCGA-DD-A39Y-01A	0 years, male, asian, stage:Stage I, dead, 171 days	41.3
TCGA-DD-AACQ-01A	0 years, male, asian, stage:Stage II, dead, 432 days	41.1
TCGA-2Y-A9GS-01A	0 years, male, white, stage:'--, dead, 724 days	40.8
TCGA-2Y-A9GZ-01A	0 years, female, white, stage:Stage II, dead, 848 days	40.5
TCGA-ED-A7XO-01A	0 years, male, asian, stage:Stage IIIA, alive, 427 days	40.5
TCGA-ZP-A9D2-01A	0 years, male, white, stage:'--, dead, 765 days	40.3
TCGA-CC-A7IJ-01A	0 years, male, asian, stage:Stage II, alive, 382 days	40.0
TCGA-G3-A25V-01A	0 years, male, white, stage:Stage I, alive, 860 days	40.0
TCGA-DD-A39X-01A	0 years, female, white, stage:Stage I, dead, 1694 days	39.9
TCGA-BC-A10T-01A	0 years, male, white, stage:'--, dead, 837 days	39.9
TCGA-XR-A8TD-01A	0 years, female, white, stage:Stage IIIB, alive, 1030 days	39.7
TCGA-ED-A7PZ-01A	0 years, male, asian, stage:Stage II, alive, 6 days	39.5
TCGA-ED-A627-01A	0 years, male, white, stage:Stage I, alive, 423 days	39.3
TCGA-G3-A3CI-01A	0 years, male, white, stage:Stage I, alive, 180 days	39.2
TCGA-FV-A2QR-01A	0 years, male, white, stage:Stage I, dead, 581 days	39.1
TCGA-G3-A25Z-01A	0 years, male, asian, stage:Stage I, alive, 655 days	38.7
TCGA-DD-A4NV-01A	0 years, male, white, stage:Stage IIIA, alive, 2398 days	38.6
TCGA-DD-A3A2-01A	0 years, female, white, stage:Stage I, dead, 2131 days	38.4
TCGA-BW-A5NO-01A	0 years, male, black or african american, stage:Stage IIIA, alive, 20 days	38.2
TCGA-BC-A10Z-01A	0 years, female, white, stage:Stage I, dead, 34 days	38.2
TCGA-5C-A9VG-01A	0 years, male, white, stage:Stage II, alive, 328 days	38.2
TCGA-YA-A8S7-01A	0 years, male, white, stage:Stage IIIA, dead, 412 days	37.8
TCGA-DD-A1ED-01A	0 years, male, white, stage:Stage I, alive, 2301 days	37.8
TCGA-BC-A69I-01A	0 years, male, white, stage:Stage I, alive, 387 days	37.3
TCGA-G3-A3CG-01A	0 years, male, white, stage:Stage I, alive, 673 days	37.3
TCGA-RC-A6M5-01A	0 years, female, white, stage:Stage IVA, alive, 15 days	37.0
TCGA-DD-AACV-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	36.9
TCGA-DD-AADC-01A	0 years, male, asian, stage:Stage I, dead, 425 days	36.9
TCGA-DD-AACB-01A	0 years, female, asian, stage:Stage I, alive, 2324 days	36.9
TCGA-CC-5264-01A	0 years, male, asian, stage:Stage IIIA, dead, 102 days	36.9
TCGA-2Y-A9H9-01A	0 years, male, white, stage:Stage I, alive, 697 days	36.8
TCGA-G3-AAV5-01A	0 years, male, white, stage:Stage II, alive, 354 days	36.5
TCGA-DD-A118-01A	0 years, female, white, stage:Stage II, alive, 3437 days	36.4
TCGA-DD-A4NR-01A	0 years, female, white, stage:Stage I, dead, 9 days	36.4
TCGA-DD-AAE3-01A	0 years, male, asian, stage:Stage I, alive, 566 days	36.0
TCGA-UB-A7MF-01A	0 years, male, white, stage:Stage IIIA, dead, 214 days	36.0
TCGA-DD-AA3A-01A	0 years, female, white, stage:Stage I, dead, 410 days	35.5
TCGA-CC-A7IK-01A	0 years, male, asian, stage:Stage IIIA, dead, 262 days	35.4
TCGA-MI-A75E-01A	0 years, male, white, stage:Stage IIIC, alive, 507 days	35.3
TCGA-DD-AAVP-01A	0 years, male, asian, stage:Stage I, alive, 2752 days	35.2
TCGA-MI-A75G-01A	0 years, male, white, stage:Stage II, alive, 698 days	35.2
TCGA-5R-AAAM-01A	0 years, female, white, stage:Stage II, dead, 46 days	35.2
TCGA-FV-A3I1-01A	0 years, female, white, stage:Stage II, dead, 247 days	35.1
TCGA-DD-AACH-01A	0 years, male, asian, stage:Stage II, dead, 195 days	35.0
TCGA-DD-A73E-01A	0 years, male, white, stage:Stage I, alive, 44 days	34.9
TCGA-2Y-A9HA-01A	0 years, male, white, stage:Stage II, dead, 36 days	34.9
TCGA-DD-A11D-01A	0 years, female, white, stage:Stage I, dead, 1560 days	34.8
TCGA-G3-A5SJ-01A	0 years, male, white, stage:Stage I, alive, 698 days	34.6
TCGA-ZP-A9CV-01A	0 years, male, white, stage:'--, dead, 1088 days	34.6
TCGA-FV-A3R3-01A	0 years, female, white, stage:Stage I, dead, 366 days	34.3
TCGA-DD-AADD-01A	0 years, male, asian, stage:Stage I, alive, 1231 days	34.0
TCGA-BC-A10R-01A	0 years, female, white, stage:'--, dead, 308 days	34.0
TCGA-DD-A11C-01A	0 years, male, white, stage:Stage I, alive, 662 days	33.7
TCGA-BC-A8YO-01A	0 years, female, white, stage:Stage IIIC, alive, 562 days	33.7
TCGA-DD-A73A-01A	0 years, male, white, stage:Stage I, alive, 728 days	33.5
TCGA-XR-A8TG-01A	0 years, male, white, stage:Stage I, alive, 898 days	33.2
TCGA-UB-A7MA-01A	0 years, female, white, stage:Stage II, alive, 848 days	33.2
TCGA-CC-A8HU-01A	0 years, female, asian, stage:Stage IIIA, dead, 344 days	33.1
TCGA-ES-A2HT-01A	0 years, male, black or african american, stage:Stage I, dead, 438 days	33.0
TCGA-DD-A3A5-01A	0 years, female, white, stage:Stage III, dead, 3125 days	32.9
TCGA-DD-A4NQ-01A	0 years, male, white, stage:Stage II, dead, 373 days	32.7
TCGA-DD-A119-01A	0 years, male, asian, stage:Stage IV, dead, 223 days	32.5
TCGA-DD-AAD1-01A	0 years, female, asian, stage:Stage I, alive, 564 days	32.5
TCGA-GJ-A6C0-01A	0 years, female, white, stage:Stage II, dead, 31 days	32.5
TCGA-2Y-A9H4-01A	0 years, male, black or african american, stage:Stage I, alive, 1452 days	32.5
TCGA-DD-A4NJ-01A	0 years, female, white, stage:Stage II, alive, 928 days	32.4
TCGA-BC-A5W4-01A	0 years, male, white, stage:Stage IIIA, dead, 547 days	32.3
TCGA-UB-A7ME-01A	0 years, male, asian, stage:Stage I, alive, 486 days	32.3
TCGA-K7-A6G5-01A	0 years, male, white, stage:Stage I, alive, 512 days	32.1
TCGA-G3-AAV3-01A	0 years, female, white, stage:Stage II, alive, 412 days	32.1
TCGA-ZS-A9CF-01A	0 years, male, white, stage:Stage II, alive, 2412 days	31.9
TCGA-KR-A7K8-01A	0 years, male, stage:Stage I, alive, 906 days	31.9
TCGA-G3-A7M5-01A	0 years, male, asian, stage:Stage I, alive, 447 days	31.9
TCGA-RC-A6M4-01A	0 years, female, white, stage:Stage IIIA, alive, 22 days	31.8
TCGA-DD-A1EE-01A	0 years, male, white, stage:Stage IIIA, dead, 349 days	31.7
TCGA-3K-AAZ8-01A	0 years, male, black or african american, stage:Stage IIIB, alive, 396 days	31.4
TCGA-K7-AAU7-01A	0 years, male, white, stage:Stage II, alive, 359 days	31.2
TCGA-4R-AA8I-01A	0 years, male, white, stage:Stage II, dead, 262 days	31.1
TCGA-ZP-A9D4-01A	0 years, female, white, stage:'--, alive, 395 days	31.0
TCGA-BC-A10Y-01A	0 years, male, white, stage:'--, dead, 711 days	31.0
TCGA-UB-AA0V-01A	0 years, female, white, stage:Stage I, alive, 314 days	31.0
TCGA-G3-A5SK-01A	0 years, male, white, stage:Stage I, alive, 744 days	30.8
TCGA-DD-A4NB-01A	0 years, male, white, stage:Stage I, alive, 989 days	30.6
TCGA-ED-A82E-01A	0 years, female, asian, stage:Stage IIIA, alive, 408 days	30.4
TCGA-DD-AADG-01A	0 years, male, asian, stage:Stage IIIA, alive, 1145 days	30.4
TCGA-DD-AAEG-01A	0 years, female, asian, stage:Stage I, alive, 719 days	30.4
TCGA-G3-AAV2-01A	0 years, male, white, stage:Stage I, alive, 372 days	30.4
TCGA-2Y-A9HB-01A	0 years, male, stage:Stage I, alive, 260 days	30.2
TCGA-LG-A6GG-01A	0 years, female, white, stage:Stage II, alive, 387 days	30.2
TCGA-BC-A3KF-01A	0 years, female, white, stage:Stage I, alive, 8 days	30.1
TCGA-2Y-A9GV-01A	0 years, female, white, stage:Stage I, dead, 2532 days	29.8
TCGA-PD-A5DF-01A	0 years, female, white, stage:Stage IIIB, dead, 639 days	29.6
TCGA-K7-A5RF-01A	0 years, male, white, stage:Stage I, alive, 631 days	29.6
TCGA-DD-AAD3-01A	0 years, male, asian, stage:Stage I, alive, 1295 days	29.6
TCGA-G3-A5SM-01A	0 years, male, white, stage:Stage II, alive, 520 days	29.4
TCGA-2Y-A9H0-01A	0 years, male, white, stage:Stage IIIA, alive, 3675 days	29.4
TCGA-BD-A3EP-01A	0 years, female, black or african american, stage:Stage I, alive, 409 days	29.3
TCGA-HP-A5MZ-01A	0 years, male, stage:Stage I, dead, 91 days	29.2
TCGA-DD-A4NP-01A	0 years, male, white, stage:Stage I, alive, 3308 days	29.1
TCGA-ZS-A9CG-01A	0 years, male, white, stage:Stage II, alive, 341 days	28.8
TCGA-BC-A112-01A	0 years, male, white, stage:'--, dead, 153 days	28.8
TCGA-DD-A115-01A	0 years, male, white, stage:Stage IIIA, dead, 2542 days	28.6
TCGA-2Y-A9GU-01A	0 years, female, white, stage:Stage I, alive, 1939 days	28.6
TCGA-G3-A6UC-01A	0 years, male, white, stage:Stage IIIB, alive, 671 days	28.5
TCGA-CC-A7IL-01A	0 years, male, asian, stage:Stage IIIA, dead, 278 days	28.4
TCGA-DD-A4NE-01A	0 years, female, white, stage:Stage IIIA, dead, 660 days	28.3
TCGA-BC-A10Q-01A	0 years, female, white, stage:'--, dead, 1135 days	28.3
TCGA-EP-A12J-01A	0 years, male, black or african american, stage:Stage I, alive, 570 days	28.2
TCGA-DD-AACY-01A	0 years, male, asian, stage:Stage I, alive, 1450 days	28.2
TCGA-2Y-A9GY-01A	0 years, female, white, stage:Stage II, dead, 757 days	28.2
TCGA-DD-A3A8-01A	0 years, male, white, stage:Stage II, dead, 11 days	28.1
TCGA-DD-AAVX-01A	0 years, male, asian, stage:Stage II, alive, 1718 days	28.0
TCGA-CC-A5UD-01A	0 years, male, asian, stage:Stage IIIA, dead, 304 days	28.0
TCGA-BC-A10X-01A	0 years, female, white, stage:Stage IIIA, dead, 770 days	28.0
TCGA-G3-A25X-01A	0 years, male, asian, stage:Stage II, alive, 1779 days	27.8
TCGA-5R-AA1D-01A	0 years, female, white, stage:Stage IIIA, alive, 449 days	27.5
TCGA-BC-A216-01A	0 years, female, white, stage:Stage IIIA, alive, 1351 days	27.4
TCGA-WJ-A86L-01A	0 years, female, white, stage:Stage I, alive, 345 days	27.3
TCGA-DD-AADW-01A	0 years, male, asian, stage:Stage I, alive, 587 days	27.2
TCGA-DD-AADV-01A	0 years, male, asian, stage:Stage I, alive, 574 days	27.2
TCGA-WX-AA46-01A	0 years, male, white, stage:Stage II, alive, 756 days	27.1
TCGA-DD-A73B-01A	0 years, female, white, stage:Stage I, dead, 283 days	27.1
TCGA-DD-A113-01A	0 years, female, white, stage:Stage II, alive, 2425 days	27.0
TCGA-RC-A7SK-01A	0 years, male, asian, stage:Stage I, alive, 472 days	27.0
TCGA-DD-AAW1-01A	0 years, male, asian, stage:Stage IIIA, alive, 1989 days	27.0
TCGA-DD-A3A3-01A	0 years, male, asian, stage:Stage I, dead, 535 days	26.8
TCGA-ZP-A9CY-01A	0 years, female, white, stage:'--, alive, 782 days	26.8
TCGA-DD-A4NF-01A	0 years, male, white, stage:Stage I, alive, 942 days	26.6
TCGA-BC-A3KG-01A	0 years, female, white, stage:Stage II, alive, 680 days	26.5
TCGA-G3-A7M6-01A	0 years, female, white, stage:Stage I, alive, 632 days	26.5
TCGA-FV-A495-01A	0 years, female, white, stage:Stage II, alive, 1 days	26.4
TCGA-DD-AACX-01A	0 years, male, asian, stage:Stage II, alive, 170 days	26.3
TCGA-DD-A4NA-01A	0 years, female, white, stage:Stage IIIC, alive, 1008 days	26.3
TCGA-DD-AAD2-01A	0 years, male, asian, stage:Stage I, alive, 658 days	26.2
TCGA-DD-AADF-01A	0 years, female, asian, stage:Stage I, dead, 115 days	26.2
TCGA-BC-A10S-01A	0 years, male, white, stage:'--, dead, 1423 days	26.2
TCGA-ED-A5KG-01A	0 years, female, asian, stage:Stage II, alive, 854 days	26.1
TCGA-DD-A1EF-01A	0 years, female, white, stage:Stage I, dead, 394 days	26.1
TCGA-KR-A7K0-01A	0 years, male, white, stage:Stage I, dead, 65 days	26.1
TCGA-WX-AA44-01A	0 years, female, white, stage:Stage I, alive, 615 days	26.0
TCGA-DD-AAVR-01A	0 years, male, asian, stage:Stage I, alive, 2513 days	26.0
TCGA-BD-A2L6-01A	0 years, male, white, stage:'--, alive, 1363 days	26.0
TCGA-K7-A5RG-01A	0 years, male, black or african american, stage:Stage I, alive, 519 days	25.9
TCGA-ED-A97K-01A	0 years, male, asian, stage:Stage IIIA, alive, 6 days	25.8
TCGA-ED-A7XP-01A	0 years, female, asian, stage:Stage II, alive, 400 days	25.8
TCGA-DD-AACZ-01A	0 years, female, asian, stage:Stage I, dead, 171 days	25.7
TCGA-UB-A7MC-01A	0 years, male, white, stage:Stage IIIA, alive, 500 days	25.7
TCGA-DD-A4NS-01A	0 years, female, white, stage:Stage I, dead, 2456 days	25.6
TCGA-BD-A3ER-01A	0 years, male, white, stage:Stage II, alive, 1115 days	25.5
TCGA-DD-AAEE-01A	0 years, male, asian, stage:Stage I, alive, 810 days	25.4
TCGA-DD-AAC9-01A	0 years, male, asian, stage:Stage I, alive, 347 days	25.4
TCGA-DD-A73D-01A	0 years, female, white, stage:Stage II, alive, 693 days	25.3
TCGA-G3-A25S-01A	0 years, male, white, stage:Stage I, dead, 416 days	25.3
TCGA-CC-A7II-01A	0 years, male, asian, stage:Stage IIIA, alive, 399 days	25.1
TCGA-O8-A75V-01A	0 years, male, stage:Stage I, alive, 538 days	25.1
TCGA-G3-A3CJ-01A	0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	25.1
TCGA-MR-A8JO-01A	0 years, male, white, stage:Stage I, alive, 330 days	25.0
TCGA-G3-AAUZ-01A	0 years, male, stage:Stage I, alive, 480 days	24.8
TCGA-DD-A1EI-01A	0 years, male, asian, stage:Stage I, alive, 183 days	24.8
TCGA-LG-A9QC-01A	0 years, male, white, stage:Stage I, alive, 425 days	24.7
TCGA-DD-A1EA-01A	0 years, male, asian, stage:Stage II, alive, 2415 days	24.7
TCGA-DD-A4NL-01A	0 years, male, white, stage:Stage I, alive, 1711 days	24.7
TCGA-DD-AAE4-01A	0 years, female, asian, stage:Stage I, alive, 608 days	24.7
TCGA-DD-A116-01A	0 years, male, asian, stage:Stage IIIA, dead, 1622 days	24.4
TCGA-2Y-A9GT-01A	0 years, male, white, stage:Stage I, dead, 1624 days	24.4
TCGA-DD-AACE-01A	0 years, male, asian, stage:Stage I, alive, 2184 days	24.4
TCGA-DD-AADY-01A	0 years, female, asian, stage:Stage I, alive, 555 days	24.3
TCGA-EP-A3RK-01A	0 years, male, white, stage:Stage IIIA, alive, 363 days	24.2
TCGA-G3-A5SL-01A	0 years, male, white, stage:Stage II, alive, 621 days	24.2
TCGA-DD-A73F-01A	0 years, female, white, stage:Stage I, alive, 1085 days	24.0
TCGA-CC-A3MB-01A	0 years, male, asian, stage:Stage IIIA, dead, 315 days	23.9
TCGA-DD-A39W-01A	0 years, female, white, stage:Stage III, dead, 827 days	23.8
TCGA-DD-A1EG-01A	0 years, male, white, stage:Stage I, dead, 1372 days	23.7
TCGA-CC-A7IH-01A	0 years, male, asian, stage:Stage IIIA, alive, 365 days	23.6
TCGA-2Y-A9GW-01A	0 years, male, white, stage:Stage I, dead, 1271 days	23.6
TCGA-DD-AAE6-01A	0 years, female, asian, stage:Stage I, alive, 141 days	23.6
TCGA-2Y-A9H8-01A	0 years, female, white, stage:'--, dead, 633 days	23.5
TCGA-DD-AAW3-01A	0 years, male, asian, stage:Stage I, alive, 1633 days	23.5
TCGA-EP-A2KC-01A	0 years, male, black or african american, stage:Stage I, dead, 19 days	23.4
TCGA-G3-A3CH-01A	0 years, male, asian, stage:Stage IIIA, alive, 780 days	23.2
TCGA-DD-A4ND-01A	0 years, female, white, stage:Stage I, alive, 2746 days	23.0
TCGA-DD-A39V-01A	0 years, male, white, stage:Stage II, dead, 643 days	23.0
TCGA-DD-AACS-01A	0 years, male, asian, stage:Stage I, alive, 1804 days	23.0
TCGA-DD-A39Z-01A	0 years, female, stage:Stage II, dead, 601 days	22.9
TCGA-DD-AACL-01A	0 years, female, asian, stage:Stage I, dead, 107 days	22.7
TCGA-EP-A26S-01A	0 years, male, white, stage:Stage I, alive, 608 days	22.6
TCGA-DD-AACK-01A	0 years, male, asian, stage:Stage I, alive, 9 days	22.5
TCGA-ZS-A9CE-01A	0 years, female, white, stage:Stage II, alive, 1241 days	22.3
TCGA-GJ-A3OU-01A	0 years, male, white, stage:Stage I, alive, 879 days	22.3
TCGA-BC-A10W-01A	0 years, male, asian, stage:'--, dead, 91 days	22.2
TCGA-ED-A4XI-01A	0 years, male, asian, stage:Stage II, alive, 819 days	22.1
TCGA-2Y-A9H3-01A	0 years, male, white, stage:Stage II, alive, 1516 days	22.1
TCGA-FV-A3I0-01A	0 years, female, white, stage:Stage II, alive, 848 days	22.0
TCGA-LG-A9QD-01A	0 years, male, white, stage:Stage IIIA, alive, 366 days	21.8
TCGA-FV-A4ZQ-01A	0 years, male, white, stage:Stage I, alive, 12 days	21.6
TCGA-DD-AAVY-01A	0 years, male, asian, stage:Stage IIIA, alive, 1970 days	21.5
TCGA-ZP-A9D1-01A	0 years, female, white, stage:'--, alive, 21 days	21.4
TCGA-DD-AAC8-01A	0 years, male, asian, stage:Stage I, dead, 16 days	21.4
TCGA-DD-A4NK-01A	0 years, female, white, stage:Stage IIIA, dead, 1210 days	21.1
TCGA-CC-A3MC-01A	0 years, male, asian, stage:Stage IIIA, alive, 363 days	21.1
TCGA-DD-A4NO-01A	0 years, male, white, stage:Stage I, alive, 2245 days	21.0
TCGA-NI-A8LF-01A	0 years, male, white, stage:Stage I, alive, 799 days	21.0
TCGA-CC-A9FW-01A	0 years, male, asian, stage:Stage IIIA, alive, 248 days	20.8
TCGA-CC-5261-01A	0 years, male, asian, stage:Stage II, dead, 97 days	20.8
TCGA-DD-A4NN-01A	0 years, female, white, stage:Stage I, dead, 899 days	20.7
TCGA-DD-AACN-01A	0 years, male, asian, stage:Stage I, alive, 1302 days	20.7
TCGA-DD-AAD8-01A	0 years, female, asian, stage:Stage I, alive, 1219 days	20.6
TCGA-DD-A4NI-01A	0 years, male, white, stage:Stage II, alive, 816 days	20.5
TCGA-CC-A7IF-01A	0 years, male, asian, stage:Stage IIIA, dead, 649 days	20.4
TCGA-DD-A3A9-01A	0 years, female, white, stage:Stage IVB, dead, 931 days	20.4
TCGA-DD-AADM-01A	0 years, male, asian, stage:Stage II, dead, 12 days	20.3
TCGA-DD-AAEK-01A	0 years, male, asian, stage:Stage II, alive, 1067 days	20.3
TCGA-2Y-A9GX-01A	0 years, male, white, stage:Stage I, alive, 2442 days	20.2
TCGA-ES-A2HS-01A	0 years, male, white, stage:Stage I, dead, 688 days	20.2
TCGA-UB-AA0U-01A	0 years, male, white, stage:Stage II, alive, 327 days	20.2
TCGA-DD-AACT-01A	0 years, female, asian, stage:Stage I, alive, 1562 days	19.8
TCGA-DD-AAW0-01A	0 years, male, asian, stage:Stage I, alive, 2015 days	19.8
TCGA-CC-5258-01A	0 years, male, asian, stage:Stage II, dead, 129 days	19.8
TCGA-DD-AACD-01A	0 years, male, asian, stage:Stage I, dead, 381 days	19.8
TCGA-ZP-A9CZ-01A	0 years, male, asian, stage:'--, alive, 706 days	19.7
TCGA-ED-A66X-01A	0 years, male, asian, stage:Stage IIIA, alive, 406 days	19.7
TCGA-CC-A7IG-01A	0 years, male, asian, stage:Stage II, dead, 299 days	19.6
TCGA-DD-AAEI-01A	0 years, male, asian, stage:Stage I, alive, 1531 days	19.5
TCGA-MI-A75H-01A	0 years, male, white, stage:'--, alive, 747 days	19.4
TCGA-DD-AAVV-01A	0 years, male, asian, stage:Stage II, alive, 2455 days	19.3
TCGA-DD-AAEH-01A	0 years, male, asian, stage:Stage I, alive, 784 days	19.3
TCGA-ED-A66Y-01A	0 years, female, asian, stage:Stage IIIA, dead, 296 days	19.2
TCGA-EP-A2KA-01A	0 years, female, white, stage:Stage IIIA, dead, 627 days	19.1
TCGA-5C-AAPD-01A	0 years, male, asian, stage:Stage II, alive, 20 days	18.9
TCGA-XR-A8TE-01A	0 years, male, white, stage:Stage IIIA, alive, 925 days	18.8
TCGA-DD-AADJ-01A	0 years, female, asian, stage:Stage I, alive, 1066 days	18.8
TCGA-DD-AAD5-01A	0 years, male, asian, stage:Stage I, alive, 1345 days	18.6
TCGA-CC-A8HT-01A	0 years, male, asian, stage:Stage IIIA, dead, 140 days	18.6
TCGA-DD-AADP-01A	0 years, male, asian, stage:Stage I, alive, 458 days	18.5
TCGA-FV-A496-01A	0 years, female, white, stage:Stage I, alive, 10 days	18.5
TCGA-2Y-A9H5-01A	0 years, female, white, stage:Stage I, dead, 555 days	18.4
TCGA-DD-AADB-01A	0 years, male, asian, stage:Stage I, alive, 1242 days	18.4
TCGA-DD-AADU-01A	0 years, male, asian, stage:Stage II, alive, 554 days	18.3
TCGA-DD-AAVU-01A	0 years, male, asian, stage:Stage II, alive, 2202 days	18.2
TCGA-CC-A8HS-01A	0 years, male, asian, stage:Stage IIIC, dead, 300 days	18.1
TCGA-DD-AACI-01A	0 years, male, asian, stage:Stage II, alive, 1618 days	17.7
TCGA-G3-AAV1-01A	0 years, male, asian, stage:Stage IIIC, dead, 359 days	17.7
TCGA-ED-A8O6-01A	0 years, female, asian, stage:Stage IIIA, dead, 56 days	17.6
TCGA-EP-A3JL-01A	0 years, male, white, stage:Stage I, alive, 303 days	17.6
TCGA-DD-AAW2-01A	0 years, male, asian, stage:Stage I, alive, 1855 days	17.4
TCGA-DD-AAE9-01A	0 years, male, asian, stage:Stage I, alive, 722 days	17.4
TCGA-RC-A7S9-01A	0 years, female, asian, stage:Stage I, alive, 640 days	17.3
TCGA-2Y-A9H6-01A	0 years, female, white, stage:Stage I, alive, 357 days	17.1
TCGA-ZP-A9D0-01A	0 years, female, black or african american, stage:'--, alive, 1091 days	17.1
TCGA-CC-A5UC-01A	0 years, male, asian, stage:Stage IIIA, dead, 347 days	17.1
TCGA-DD-A1EH-01A	0 years, male, white, stage:Stage III, alive, 1495 days	17.0
TCGA-DD-A4NH-01A	0 years, female, white, stage:Stage IIIB, alive, 917 days	17.0
TCGA-DD-AAEA-01A	0 years, male, asian, stage:Stage I, alive, 575 days	16.9
TCGA-DD-A1EJ-01A	0 years, female, white, stage:Stage IIIC, dead, 1005 days	16.9
TCGA-XR-A8TF-01A	0 years, male, white, stage:Stage I, dead, 693 days	16.7
TCGA-DD-AACC-01A	0 years, male, asian, stage:Stage I, dead, 1685 days	16.6
TCGA-DD-A73G-01A	0 years, female, white, stage:Stage I, alive, 3478 days	16.6
TCGA-DD-AAVS-01A	0 years, male, asian, stage:Stage I, alive, 1823 days	16.1
TCGA-BC-A69H-01A	0 years, male, white, stage:Stage II, alive, 444 days	16.1
TCGA-DD-AACP-01A	0 years, male, asian, stage:Stage I, alive, 415 days	15.5
TCGA-DD-AAE7-01A	0 years, male, asian, stage:Stage I, alive, 644 days	15.5
TCGA-RG-A7D4-01A	0 years, male, black or african american, stage:Stage II, alive, 1098 days	15.4
TCGA-G3-AAV6-01A	0 years, female, white, stage:Stage IIIA, dead, 65 days	15.3
TCGA-ED-A8O5-01A	0 years, female, asian, stage:Stage IIIA, alive, 406 days	15.2
TCGA-2Y-A9H7-01A	0 years, female, white, stage:Stage I, alive, 1168 days	15.2
TCGA-DD-AAD0-01A	0 years, female, asian, stage:Stage I, alive, 137 days	14.9
TCGA-DD-AADK-01A	0 years, female, asian, stage:Stage II, alive, 1049 days	14.7
TCGA-DD-AACG-01A	0 years, male, asian, stage:Stage II, dead, 469 days	14.5
TCGA-DD-A11B-01A	0 years, male, white, stage:Stage I, dead, 14 days	14.3
TCGA-KR-A7K2-01A	0 years, male, white, stage:Stage I, alive, 829 days	14.1
TCGA-2Y-A9H1-01A	0 years, male, white, stage:Stage I, dead, 1229 days	13.9
TCGA-FV-A23B-01A	0 years, female, white, stage:Stage II, dead, 1852 days	13.9
TCGA-DD-AADO-01A	0 years, male, asian, stage:Stage I, alive, 453 days	13.9
TCGA-DD-AAVQ-01A	0 years, male, asian, stage:Stage I, alive, 2728 days	13.8
TCGA-CC-A9FS-01A	0 years, male, asian, stage:Stage II, alive, 211 days	13.8
TCGA-DD-AAVW-01A	0 years, male, asian, stage:Stage I, alive, 2317 days	13.8
TCGA-MI-A75C-01A	0 years, male, white, stage:Stage I, alive, 291 days	13.8
TCGA-DD-AAVZ-01A	0 years, male, asian, stage:Stage I, alive, 1900 days	13.7
TCGA-WX-AA47-01A	0 years, female, white, stage:Stage IIIA, dead, 556 days	13.4
TCGA-XR-A8TC-01A	0 years, female, white, stage:Stage I, alive, 1339 days	13.3
TCGA-FV-A2QQ-01A	0 years, male, white, stage:Stage I, alive, 729 days	13.2
TCGA-DD-AACA-01A	0 years, male, asian, stage:Stage I, alive, 2301 days	12.8
TCGA-DD-AADI-01A	0 years, female, asian, stage:Stage I, alive, 1085 days	12.6
TCGA-DD-A4NG-01A	0 years, male, white, stage:Stage IIIA, dead, 802 days	12.6
TCGA-G3-AAV0-01A	0 years, male, asian, stage:Stage I, alive, 476 days	12.6
TCGA-RC-A7SF-01A	0 years, male, asian, stage:Stage I, alive, 579 days	12.6
TCGA-5C-A9VH-01A	0 years, male, white, stage:Stage I, alive, 322 days	12.6
TCGA-DD-AADQ-01A	0 years, male, asian, stage:Stage II, alive, 436 days	12.5
TCGA-DD-AADR-01A	0 years, male, asian, stage:Stage I, alive, 2028 days	12.4
TCGA-KR-A7K7-01A	0 years, female, white, stage:Stage II, alive, 951 days	12.3
TCGA-DD-AACJ-01A	0 years, male, asian, stage:Stage II, alive, 2102 days	11.9
TCGA-DD-AAE0-01A	0 years, female, asian, stage:Stage IIIA, alive, 555 days	11.6
TCGA-DD-AADS-01A	0 years, male, asian, stage:Stage I, alive, 474 days	11.3
TCGA-DD-AACO-01A	0 years, male, asian, stage:Stage I, alive, 1876 days	10.7
TCGA-EP-A2KB-01A	0 years, female, white, stage:Stage I, dead, 596 days	10.5
TCGA-WQ-AB4B-01A	0 years, male, white, stage:Stage II, alive, 395 days	10.5
TCGA-CC-A123-01A	0 years, female, asian, stage:Stage IIIA, alive, 219 days	10.2
TCGA-RC-A7SH-01A	0 years, male, asian, stage:Stage II, alive, 468 days	10.1
TCGA-ED-A7PY-01A	0 years, female, asian, stage:Stage II, alive, 390 days	9.9
TCGA-WQ-A9G7-01A	0 years, female, white, stage:'--, alive, 30 days	9.8
TCGA-DD-A3A6-01A	0 years, female, white, stage:Stage II, dead, 3258 days	9.6
TCGA-DD-AACW-01A	0 years, male, asian, stage:Stage I, alive, 1424 days	9.6
TCGA-DD-AADN-01A	0 years, male, asian, stage:Stage I, alive, 898 days	9.4
TCGA-DD-AAD6-01A	0 years, male, asian, stage:Stage IIIA, alive, 672 days	9.0
TCGA-FV-A4ZP-01A	0 years, male, white, stage:Stage IIIA, dead, 2486 days	8.9
TCGA-CC-A7IE-01A	0 years, male, asian, stage:Stage IIIA, dead, 217 days	8.1
TCGA-CC-A8HV-01A	0 years, female, asian, stage:Stage II, dead, 279 days	7.3
TCGA-DD-AAEB-01A	0 years, male, asian, stage:Stage I, alive, 478 days	6.7
TCGA-DD-AAE1-01A	0 years, male, asian, stage:Stage I, alive, 552 days	6.6
TCGA-DD-A3A7-01A	0 years, male, stage:Stage IIIB, dead, 419 days	6.3
TCGA-DD-AAED-01A	0 years, male, asian, stage:Stage I, alive, 763 days	4.3
TCGA-DD-AADA-01A	0 years, female, asian, stage:Stage I, alive, 1233 days	3.3
TCGA-CC-5259-01A	0 years, female, asian, stage:Stage IIIC, alive, 250 days	3.2
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
537	Tumor	1.9
957	Tumor	1.6
1027	Tumor	1.3
925	Tumor	1.3
1015	Tumor	1.2
745	Tumor	1.1
953	Tumor	1.1
513	Tumor	1.0
981	Tumor	1.0
327	Tumor	0.9
571	Tumor	0.9
627	Tumor	0.9
755	Tumor	0.9
477	Tumor	0.8
257	Tumor	0.7
484	Normal	0.7
573	Tumor	0.7
1041	Tumor	0.7
448	Normal	0.7
145	Tumor	0.7
647	Tumor	0.7
525	Tumor	0.6
922	Normal	0.6
361	Tumor	0.6
1028	Normal	0.6
967	Tumor	0.6
912	Normal	0.6
913	Tumor	0.6
968	Normal	0.6
615	Tumor	0.5
528	Normal	0.5
518	Normal	0.5
1014	Normal	0.5
786	Normal	0.5
868	Normal	0.5
487	Tumor	0.5
554	Normal	0.5
785	Tumor	0.5
955	Tumor	0.5
976	Normal	0.5
696	Normal	0.5
526	Normal	0.5
918	Normal	0.5
1013	Tumor	0.5
1026	Normal	0.5
714	Normal	0.5
746	Normal	0.5
723	Tumor	0.5
1032	Normal	0.5
1044	Normal	0.4
965	Tumor	0.4
695	Tumor	0.4
494	Normal	0.4
558	Normal	0.4
228	Normal	0.4
1045	Tumor	0.4
944	Normal	0.4
937	Tumor	0.4
924	Normal	0.4
916	Normal	0.4
492	Normal	0.4
533	Tumor	0.4
534	Normal	0.4
461	Tumor	0.4
557	Tumor	0.4
474	Normal	0.4
412	Normal	0.4
697	Tumor	0.4
1022	Normal	0.4
866	Normal	0.4
864	Normal	0.4
964	Normal	0.4
478	Normal	0.4
284	Normal	0.4
926	Normal	0.4
514	Normal	0.4
923	Tumor	0.4
1042	Normal	0.4
978	Normal	0.4
728	Normal	0.4
564	Normal	0.4
984	Normal	0.4
286	Normal	0.3
873	Tumor	0.3
376	Normal	0.3
466	Normal	0.3
958	Normal	0.3
462	Normal	0.3
142	Normal	0.3
716	Normal	0.3
328	Normal	0.3
851	Tumor	0.3
355	Tumor	0.3
546	Normal	0.3
816	Normal	0.3
368	Normal	0.3
1046	Normal	0.3
497	Tumor	0.3
915	Tumor	0.3
742	Normal	0.3
1016	Normal	0.3
778	Normal	0.3
356	Normal	0.3
538	Normal	0.3
756	Normal	0.3
722	Normal	0.3
982	Normal	0.3
527	Tumor	0.3
424	Normal	0.3
738	Normal	0.3
491	Tumor	0.3
884	Normal	0.3
686	Normal	0.3
882	Normal	0.3
883	Tumor	0.3
125	Tumor	0.3
212	Normal	0.3
313	Tumor	0.3
874	Normal	0.3
423	Tumor	0.3
938	Normal	0.3
563	Tumor	0.3
366	Normal	0.2
227	Tumor	0.2
568	Normal	0.2
954	Normal	0.2
536	Normal	0.2
572	Normal	0.2
713	Tumor	0.2
392	Normal	0.2
364	Normal	0.2
943	Tumor	0.2
488	Normal	0.2
425	Tumor	0.2
777	Tumor	0.2
515	Tumor	0.2
137	Tumor	0.2
741	Tumor	0.2
721	Tumor	0.2
914	Normal	0.2
524	Normal	0.2
362	Normal	0.2
365	Tumor	0.2
878	Normal	0.2
616	Normal	0.2
698	Normal	0.2
427	Tumor	0.2
481	Tumor	0.2
966	Normal	0.2
858	Normal	0.2
436	Normal	0.2
416	Normal	0.2
911	Tumor	0.2
482	Normal	0.2
128	Normal	0.2
357	Tumor	0.1
823	Tumor	0.1
465	Tumor	0.1
952	Normal	0.1
483	Tumor	0.1
232	Normal	0.1
421	Tumor	0.1
414	Normal	0.1
358	Normal	0.1
493	Tumor	0.1
628	Normal	0.1
258	Normal	0.1
472	Normal	0.1
857	Tumor	0.1
114	Normal	0.1
111	Normal	0.1
112	Tumor	0.1
224	Normal	0.1
498	Normal	0.1
648	Normal	0.1
956	Normal	0.0
113	Tumor	0.0
132	Normal	0.0
452	Normal	0.0
852	Normal	0.0
413	Tumor	0.0
384	Normal	0.0
636	Normal	0.0
862	Normal	N/A
344	Normal	0.0
447	Tumor	0.0
516	Normal	0.0
867	Tumor	0.0
283	Tumor	0.0
824	Normal	0.0
818	Normal	0.0
1021	Tumor	0.0
727	Tumor	0.0
663	Tumor	0.0
262	Normal	0.0
223	Tumor	0.0
863	Tumor	-0.1
574	Normal	-0.1
415	Tumor	-0.1
352	Normal	-0.1
268	Normal	-0.1
148	Normal	-0.1
278	Normal	-0.1
395	Tumor	-0.1
865	Tumor	-0.1
261	Tumor	-0.1
464	Normal	-0.1
428	Normal	-0.1
422	Normal	-0.1
618	Normal	-0.1
473	Tumor	-0.1
737	Tumor	-0.1
393	Tumor	-0.1
468	Normal	-0.1
435	Tumor	-0.2
411	Tumor	-0.2
367	Tumor	-0.2
341	Tumor	-0.2
861	Tumor	-0.2
363	Tumor	-0.2
664	Normal	-0.2
298	Normal	-0.2
387	Tumor	-0.2
124	Normal	-0.2
744	Normal	-0.2
136	Normal	-0.2
267	Tumor	-0.2
567	Tumor	-0.2
426	Normal	-0.2
456	Normal	-0.2
214	Normal	-0.2
231	Tumor	-0.2
126	Normal	-0.2
354	Normal	-0.2
312	Normal	-0.3
138	Normal	-0.3
146	Normal	-0.3
662	Normal	-0.3
724	Normal	-0.3
396	Normal	-0.3
127	Tumor	-0.3
523	Tumor	-0.3
545	Tumor	-0.3
272	Normal	-0.3
172	Normal	-0.3
375	Tumor	-0.3
666	Normal	-0.3
446	Normal	-0.3
162	Normal	-0.3
391	Tumor	-0.3
665	Tumor	-0.3
672	Normal	-0.3
141	Tumor	-0.3
553	Tumor	-0.3
451	Tumor	-0.3
635	Tumor	-0.3
285	Tumor	-0.3
388	Normal	-0.3
188	Normal	-0.4
314	Normal	-0.4
642	Normal	-0.4
963	Tumor	-0.4
815	Tumor	-0.4
535	Tumor	-0.4
211	Tumor	-0.4
685	Tumor	-0.4
434	Normal	-0.4
332	Normal	-0.4
218	Normal	-0.4
617	Tumor	-0.4
342	Normal	-0.5
135	Tumor	-0.5
951	Tumor	-0.5
386	Normal	-0.5
195	Tumor	-0.5
1043	Tumor	-0.5
444	Normal	-0.5
161	Tumor	-0.5
297	Tumor	-0.5
383	Tumor	-0.5
186	Normal	-0.5
517	Tumor	-0.5
343	Tumor	-0.5
1025	Tumor	-0.5
471	Tumor	-0.5
433	Tumor	-0.5
222	Normal	-0.6
353	Tumor	-0.6
463	Tumor	-0.6
983	Tumor	-0.6
432	Normal	-0.6
977	Tumor	-0.6
185	Tumor	-0.6
311	Tumor	-0.7
814	Normal	-0.7
196	Normal	-0.7
1031	Tumor	-0.7
921	Tumor	-0.7
817	Tumor	-0.7
455	Tumor	-0.7
743	Tumor	-0.7
467	Tumor	-0.7
641	Tumor	-0.8
171	Tumor	-0.8
431	Tumor	-0.8
975	Tumor	-0.8
881	Tumor	-0.8
123	Tumor	-0.8
187	Tumor	-0.8
813	Tumor	-0.8
277	Tumor	-0.8
147	Tumor	-0.8
715	Tumor	-0.9
351	Tumor	-0.9
394	Normal	-0.9
443	Tumor	-0.9
917	Tumor	-0.9
192	Normal	-0.9
661	Tumor	-0.9
191	Tumor	-1.0
213	Tumor	-1.0
877	Tumor	-1.1
217	Tumor	-1.1
445	Tumor	-1.1
385	Tumor	-1.1
671	Tumor	-1.2
131	Tumor	-1.2
271	Tumor	-1.4
221	Tumor	-1.4
331	Tumor	-1.7
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA065331
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Carcinoma, Hepatocellular, NOS
Cholangiocarcinoma