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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DTX3L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
47.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
43.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
36.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
34.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
33.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
33.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
25.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
24.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
22.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
21.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
21.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
21.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
21.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
21.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
20.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
19.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
18.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
15.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
14.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
10.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DTX3L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.3
Number of samples
231
Samples
Sample
Description
TPM
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
33.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
31.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
28.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
27.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
25.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
25.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
23.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
21.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
18.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
18.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
17.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
15.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
13.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
1.2
557
Tumor
1.0
865
Tumor
0.8
921
Tumor
0.8
327
Tumor
0.8
955
Tumor
0.8
467
Tumor
0.8
817
Tumor
0.7
1043
Tumor
0.7
715
Tumor
0.7
553
Tumor
0.7
523
Tumor
0.7
113
Tumor
0.6
861
Tumor
0.6
451
Tumor
0.6
1025
Tumor
0.6
221
Tumor
0.6
977
Tumor
0.5
975
Tumor
0.5
636
Normal
0.5
533
Tumor
0.5
745
Tumor
0.5
271
Tumor
0.5
554
Normal
0.5
525
Tumor
0.5
448
Normal
0.5
851
Tumor
0.4
536
Normal
0.4
966
Normal
0.4
647
Tumor
0.4
915
Tumor
0.4
415
Tumor
0.4
1046
Normal
0.4
477
Tumor
0.4
261
Tumor
0.4
978
Normal
0.4
127
Tumor
0.4
343
Tumor
0.4
524
Normal
0.4
262
Normal
0.4
1028
Normal
0.4
1041
Tumor
0.4
218
Normal
0.4
558
Normal
0.3
778
Normal
0.3
727
Tumor
0.3
981
Tumor
0.3
957
Tumor
0.3
344
Normal
0.3
447
Tumor
0.3
956
Normal
0.3
937
Tumor
0.3
641
Tumor
0.3
883
Tumor
0.3
1044
Normal
0.3
951
Tumor
0.3
952
Normal
0.3
393
Tumor
0.3
777
Tumor
0.3
963
Tumor
0.3
487
Tumor
0.3
964
Normal
0.3
416
Normal
0.3
493
Tumor
0.3
913
Tumor
0.3
471
Tumor
0.3
376
Normal
0.2
1021
Tumor
0.2
286
Normal
0.2
663
Tumor
0.2
142
Normal
0.2
737
Tumor
0.2
918
Normal
0.2
724
Normal
0.2
857
Tumor
0.2
924
Normal
0.2
983
Tumor
0.2
884
Normal
0.2
535
Tumor
0.2
421
Tumor
0.2
211
Tumor
0.2
944
Normal
0.2
284
Normal
0.2
481
Tumor
0.2
392
Normal
0.2
696
Normal
0.2
228
Normal
0.2
568
Normal
0.2
982
Normal
0.2
358
Normal
0.2
984
Normal
0.2
698
Normal
0.1
1026
Normal
0.1
686
Normal
0.1
396
Normal
0.1
914
Normal
0.1
187
Tumor
0.1
452
Normal
0.1
267
Tumor
0.1
213
Tumor
0.1
526
Normal
0.1
434
Normal
0.1
124
Normal
0.1
217
Tumor
0.1
925
Tumor
0.1
128
Normal
0.1
414
Normal
0.1
468
Normal
0.1
746
Normal
0.1
617
Tumor
0.1
223
Tumor
0.1
723
Tumor
0.1
1014
Normal
0.1
412
Normal
0.1
492
Normal
0.1
728
Normal
0.1
137
Tumor
0.1
258
Normal
0.1
431
Tumor
0.1
538
Normal
0.1
422
Normal
0.1
1022
Normal
0.1
195
Tumor
0.1
666
Normal
0.1
375
Tumor
0.1
813
Tumor
0.1
858
Normal
0.1
862
Normal
0.1
922
Normal
0.1
311
Tumor
0.1
721
Tumor
0.1
518
Normal
0.1
212
Normal
0.1
917
Tumor
0.1
462
Normal
0.1
111
Normal
0.1
572
Normal
0.1
285
Tumor
0.1
968
Normal
0.1
141
Tumor
0.1
474
Normal
0.1
628
Normal
0.1
232
Normal
0.1
135
Tumor
0.1
515
Tumor
0.1
214
Normal
0.1
268
Normal
0.1
823
Tumor
0.1
881
Tumor
0.1
494
Normal
0.1
272
Normal
0.1
866
Normal
0.1
352
Normal
0.1
926
Normal
0.1
383
Tumor
0.0
916
Normal
0.0
738
Normal
0.0
161
Tumor
0.0
958
Normal
0.0
878
Normal
0.0
742
Normal
0.0
755
Tumor
0.0
283
Tumor
0.0
816
Normal
0.0
528
Normal
0.0
852
Normal
0.0
443
Tumor
0.0
912
Normal
0.0
662
Normal
0.0
277
Tumor
0.0
368
Normal
0.0
361
Tumor
0.0
411
Tumor
0.0
446
Normal
0.0
534
Normal
0.0
514
Normal
0.0
231
Tumor
0.0
196
Normal
0.0
356
Normal
0.0
1045
Tumor
0.0
433
Tumor
0.0
332
Normal
0.0
353
Tumor
0.0
445
Tumor
0.0
867
Tumor
0.0
488
Normal
0.0
642
Normal
0.0
482
Normal
0.0
756
Normal
0.0
364
Normal
0.0
136
Normal
0.0
355
Tumor
0.0
424
Normal
0.0
664
Normal
0.0
435
Tumor
0.0
874
Normal
0.0
527
Tumor
0.0
965
Tumor
0.0
466
Normal
0.0
814
Normal
0.0
716
Normal
0.0
574
Normal
0.0
384
Normal
0.0
426
Normal
0.0
172
Normal
0.0
516
Normal
0.0
362
Normal
0.0
714
Normal
0.0
517
Tumor
0.0
546
Normal
0.0
386
Normal
-0.1
126
Normal
-0.1
147
Tumor
-0.1
1016
Normal
-0.1
545
Tumor
-0.1
616
Normal
-0.1
138
Normal
-0.1
483
Tumor
-0.1
786
Normal
-0.1
1027
Tumor
-0.1
463
Tumor
-0.1
618
Normal
-0.1
1032
Normal
-0.1
456
Normal
-0.1
148
Normal
-0.1
186
Normal
-0.1
882
Normal
-0.1
191
Tumor
-0.1
224
Normal
-0.1
564
Normal
-0.1
1013
Tumor
-0.1
112
Tumor
-0.1
713
Tumor
-0.1
473
Tumor
-0.1
188
Normal
-0.1
427
Tumor
-0.1
464
Normal
-0.1
391
Tumor
-0.1
114
Normal
-0.1
1015
Tumor
-0.1
824
Normal
-0.1
648
Normal
-0.1
314
Normal
-0.1
864
Normal
-0.1
744
Normal
-0.1
537
Tumor
-0.1
954
Normal
-0.1
976
Normal
-0.1
722
Normal
-0.2
413
Tumor
-0.2
938
Normal
-0.2
818
Normal
-0.2
943
Tumor
-0.2
1042
Normal
-0.2
868
Normal
-0.2
278
Normal
-0.2
697
Tumor
-0.2
354
Normal
-0.2
162
Normal
-0.2
432
Normal
-0.2
873
Tumor
-0.2
563
Tumor
-0.2
484
Normal
-0.2
461
Tumor
-0.2
436
Normal
-0.2
923
Tumor
-0.2
227
Tumor
-0.2
465
Tumor
-0.2
672
Normal
-0.2
366
Normal
-0.2
328
Normal
-0.2
428
Normal
-0.2
425
Tumor
-0.2
132
Normal
-0.2
222
Normal
-0.2
491
Tumor
-0.2
661
Tumor
-0.2
367
Tumor
-0.2
444
Normal
-0.2
146
Normal
-0.2
498
Normal
-0.2
573
Tumor
-0.2
388
Normal
-0.2
313
Tumor
-0.2
423
Tumor
-0.2
695
Tumor
-0.2
472
Normal
-0.2
185
Tumor
-0.3
665
Tumor
-0.3
342
Normal
-0.3
478
Normal
-0.3
257
Tumor
-0.3
312
Normal
-0.3
455
Tumor
-0.3
123
Tumor
-0.3
497
Tumor
-0.3
341
Tumor
-0.3
357
Tumor
-0.3
394
Normal
-0.3
741
Tumor
-0.3
615
Tumor
-0.3
627
Tumor
-0.3
567
Tumor
-0.3
863
Tumor
-0.3
785
Tumor
-0.3
145
Tumor
-0.3
387
Tumor
-0.3
131
Tumor
-0.4
171
Tumor
-0.4
125
Tumor
-0.4
953
Tumor
-0.4
395
Tumor
-0.4
363
Tumor
-0.4
385
Tumor
-0.4
513
Tumor
-0.5
671
Tumor
-0.5
192
Normal
-0.5
911
Tumor
-0.5
365
Tumor
-0.5
967
Tumor
-0.6
815
Tumor
-0.6
635
Tumor
-0.6
331
Tumor
-0.6
571
Tumor
-0.7
298
Normal
-0.7
877
Tumor
-0.8
297
Tumor
-0.9
743
Tumor
-0.9
685
Tumor
-1.1
351
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
