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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC3 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
48.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
42.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
37.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
34.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
33.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
30.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
29.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
27.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
27.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
26.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
24.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
24.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
24.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
22.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
20.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
20.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
19.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
19.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
18.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
17.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
17.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
17.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
16.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
16.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
16.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
15.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
14.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
13.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
10.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
9.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZDHHC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.7
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
5.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
4.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
4.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
4.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
4.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
3.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
3.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
3.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
3.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
3.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
2.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
671
Tumor
1.2
745
Tumor
1.1
257
Tumor
1.1
937
Tumor
0.9
395
Tumor
0.9
261
Tumor
0.8
285
Tumor
0.8
231
Tumor
0.7
267
Tumor
0.7
727
Tumor
0.7
351
Tumor
0.7
911
Tumor
0.7
743
Tumor
0.7
123
Tumor
0.6
113
Tumor
0.6
161
Tumor
0.6
283
Tumor
0.6
567
Tumor
0.6
125
Tumor
0.5
327
Tumor
0.5
227
Tumor
0.5
367
Tumor
0.5
537
Tumor
0.5
391
Tumor
0.5
341
Tumor
0.5
375
Tumor
0.5
342
Normal
0.5
435
Tumor
0.5
411
Tumor
0.5
858
Normal
0.5
463
Tumor
0.4
344
Normal
0.4
387
Tumor
0.4
331
Tumor
0.4
427
Tumor
0.4
695
Tumor
0.4
724
Normal
0.4
641
Tumor
0.4
755
Tumor
0.4
393
Tumor
0.4
741
Tumor
0.4
533
Tumor
0.4
983
Tumor
0.4
353
Tumor
0.4
228
Normal
0.4
665
Tumor
0.4
525
Tumor
0.4
647
Tumor
0.4
851
Tumor
0.4
232
Normal
0.4
354
Normal
0.3
921
Tumor
0.3
365
Tumor
0.3
817
Tumor
0.3
535
Tumor
0.3
913
Tumor
0.3
737
Tumor
0.3
914
Normal
0.3
358
Normal
0.3
311
Tumor
0.3
384
Normal
0.3
1045
Tumor
0.3
882
Normal
0.3
713
Tumor
0.3
874
Normal
0.3
951
Tumor
0.3
877
Tumor
0.3
491
Tumor
0.3
1015
Tumor
0.2
982
Normal
0.2
617
Tumor
0.2
368
Normal
0.2
917
Tumor
0.2
361
Tumor
0.2
297
Tumor
0.2
1041
Tumor
0.2
262
Normal
0.2
286
Normal
0.2
777
Tumor
0.2
523
Tumor
0.2
363
Tumor
0.2
451
Tumor
0.2
615
Tumor
0.2
258
Normal
0.2
314
Normal
0.2
313
Tumor
0.2
824
Normal
0.2
147
Tumor
0.2
436
Normal
0.2
883
Tumor
0.2
461
Tumor
0.1
716
Normal
0.1
477
Tumor
0.1
352
Normal
0.1
957
Tumor
0.1
528
Normal
0.1
171
Tumor
0.1
434
Normal
0.1
722
Normal
0.1
148
Normal
0.1
332
Normal
0.1
421
Tumor
0.1
813
Tumor
0.1
978
Normal
0.1
383
Tumor
0.1
952
Normal
0.1
376
Normal
0.1
1043
Tumor
0.1
278
Normal
0.1
112
Tumor
0.1
185
Tumor
0.1
224
Normal
0.1
661
Tumor
0.1
428
Normal
0.1
186
Normal
0.1
343
Tumor
0.1
131
Tumor
0.1
127
Tumor
0.1
815
Tumor
0.1
1025
Tumor
0.1
433
Tumor
0.1
445
Tumor
0.1
298
Normal
0.1
356
Normal
0.1
455
Tumor
0.1
698
Normal
0.1
188
Normal
0.1
467
Tumor
0.0
981
Tumor
0.0
616
Normal
0.0
312
Normal
0.0
448
Normal
0.0
172
Normal
0.0
1027
Tumor
0.0
432
Normal
0.0
686
Normal
0.0
162
Normal
0.0
965
Tumor
0.0
447
Tumor
0.0
697
Tumor
0.0
955
Tumor
0.0
636
Normal
0.0
492
Normal
0.0
728
Normal
0.0
953
Tumor
0.0
328
Normal
0.0
863
Tumor
0.0
357
Tumor
0.0
135
Tumor
0.0
943
Tumor
0.0
721
Tumor
0.0
975
Tumor
0.0
114
Normal
0.0
714
Normal
0.0
141
Tumor
0.0
191
Tumor
0.0
446
Normal
0.0
878
Normal
0.0
627
Tumor
0.0
881
Tumor
0.0
517
Tumor
0.0
857
Tumor
0.0
211
Tumor
0.0
426
Normal
0.0
195
Tumor
0.0
553
Tumor
0.0
564
Normal
0.0
536
Normal
0.0
366
Normal
0.0
868
Normal
0.0
212
Normal
0.0
984
Normal
0.0
145
Tumor
0.0
362
Normal
0.0
422
Normal
0.0
223
Tumor
0.0
642
Normal
0.0
818
Normal
0.0
816
Normal
0.0
918
Normal
0.0
778
Normal
0.0
1031
Tumor
-0.1
277
Tumor
-0.1
956
Normal
-0.1
554
Normal
-0.1
414
Normal
-0.1
526
Normal
-0.1
862
Normal
-0.1
696
Normal
-0.1
443
Tumor
-0.1
1013
Tumor
-0.1
1021
Tumor
-0.1
132
Normal
-0.1
738
Normal
-0.1
272
Normal
-0.1
213
Tumor
-0.1
977
Tumor
-0.1
1016
Normal
-0.1
924
Normal
-0.1
648
Normal
-0.1
192
Normal
-0.1
568
Normal
-0.1
944
Normal
-0.1
873
Tumor
-0.1
466
Normal
-0.1
124
Normal
-0.1
746
Normal
-0.1
864
Normal
-0.1
187
Tumor
-0.1
923
Tumor
-0.1
1046
Normal
-0.1
111
Normal
-0.1
1044
Normal
-0.1
464
Normal
-0.1
574
Normal
-0.1
916
Normal
-0.1
128
Normal
-0.1
416
Normal
-0.1
471
Tumor
-0.1
534
Normal
-0.1
967
Tumor
-0.1
814
Normal
-0.1
487
Tumor
-0.1
221
Tumor
-0.1
866
Normal
-0.1
431
Tumor
-0.1
481
Tumor
-0.1
465
Tumor
-0.1
742
Normal
-0.1
137
Tumor
-0.1
618
Normal
-0.1
926
Normal
-0.1
884
Normal
-0.2
922
Normal
-0.2
136
Normal
-0.2
444
Normal
-0.2
662
Normal
-0.2
756
Normal
-0.2
284
Normal
-0.2
925
Tumor
-0.2
396
Normal
-0.2
138
Normal
-0.2
468
Normal
-0.2
664
Normal
-0.2
672
Normal
-0.2
938
Normal
-0.2
635
Tumor
-0.2
715
Tumor
-0.2
126
Normal
-0.2
142
Normal
-0.2
412
Normal
-0.2
823
Tumor
-0.2
424
Normal
-0.2
968
Normal
-0.2
462
Normal
-0.2
1014
Normal
-0.2
954
Normal
-0.2
415
Tumor
-0.2
545
Tumor
-0.2
861
Tumor
-0.2
423
Tumor
-0.2
413
Tumor
-0.2
364
Normal
-0.2
514
Normal
-0.2
558
Normal
-0.2
546
Normal
-0.2
563
Tumor
-0.2
963
Tumor
-0.2
385
Tumor
-0.3
538
Normal
-0.3
786
Normal
-0.3
498
Normal
-0.3
513
Tumor
-0.3
557
Tumor
-0.3
488
Normal
-0.3
452
Normal
-0.3
628
Normal
-0.3
573
Tumor
-0.3
271
Tumor
-0.3
456
Normal
-0.3
217
Tumor
-0.3
146
Normal
-0.3
785
Tumor
-0.3
218
Normal
-0.3
386
Normal
-0.3
425
Tumor
-0.3
976
Normal
-0.3
867
Tumor
-0.3
214
Normal
-0.3
964
Normal
-0.3
1026
Normal
-0.3
966
Normal
-0.3
1022
Normal
-0.3
852
Normal
-0.3
494
Normal
-0.3
394
Normal
-0.3
912
Normal
-0.3
723
Tumor
-0.3
482
Normal
-0.4
474
Normal
-0.4
388
Normal
-0.4
1028
Normal
-0.4
483
Tumor
-0.4
1032
Normal
-0.4
666
Normal
-0.4
472
Normal
-0.4
1042
Normal
-0.4
222
Normal
-0.4
527
Tumor
-0.4
915
Tumor
-0.4
958
Normal
-0.4
524
Normal
-0.4
663
Tumor
-0.5
518
Normal
-0.5
478
Normal
-0.5
196
Normal
-0.5
493
Tumor
-0.5
355
Tumor
-0.5
571
Tumor
-0.5
497
Tumor
-0.5
685
Tumor
-0.5
572
Normal
-0.5
392
Normal
-0.5
268
Normal
-0.5
744
Normal
-0.5
484
Normal
-0.6
473
Tumor
-0.6
865
Tumor
-0.6
515
Tumor
-0.6
516
Normal
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
