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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GYG1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
48.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
33.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
31.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
29.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
27.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
26.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
24.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
22.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
16.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
15.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
11.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
11.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
11.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GYG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
122.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
28.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
28.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
28.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
25.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
3.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.9
917
Tumor
0.8
125
Tumor
0.7
745
Tumor
0.7
285
Tumor
0.7
851
Tumor
0.7
283
Tumor
0.6
467
Tumor
0.6
724
Normal
0.6
211
Tumor
0.6
223
Tumor
0.6
385
Tumor
0.6
967
Tumor
0.5
573
Tumor
0.5
224
Normal
0.5
126
Normal
0.5
478
Normal
0.4
444
Normal
0.4
778
Normal
0.4
192
Normal
0.4
268
Normal
0.4
311
Tumor
0.4
857
Tumor
0.4
327
Tumor
0.4
513
Tumor
0.4
536
Normal
0.4
498
Normal
0.3
713
Tumor
0.3
262
Normal
0.3
384
Normal
0.3
662
Normal
0.3
966
Normal
0.3
852
Normal
0.3
491
Tumor
0.3
777
Tumor
0.3
516
Normal
0.3
114
Normal
0.3
146
Normal
0.3
351
Tumor
0.3
641
Tumor
0.3
914
Normal
0.3
952
Normal
0.3
524
Normal
0.3
558
Normal
0.3
978
Normal
0.3
938
Normal
0.3
535
Tumor
0.3
452
Normal
0.3
661
Tumor
0.2
451
Tumor
0.2
228
Normal
0.2
414
Normal
0.2
574
Normal
0.2
664
Normal
0.2
563
Tumor
0.2
217
Tumor
0.2
723
Tumor
0.2
124
Normal
0.2
455
Tumor
0.2
616
Normal
0.2
528
Normal
0.2
286
Normal
0.2
642
Normal
0.2
284
Normal
0.2
213
Tumor
0.2
1022
Normal
0.2
111
Normal
0.2
1016
Normal
0.2
272
Normal
0.2
954
Normal
0.2
113
Tumor
0.2
147
Tumor
0.2
648
Normal
0.2
525
Tumor
0.2
362
Normal
0.2
518
Normal
0.2
738
Normal
0.2
538
Normal
0.2
672
Normal
0.2
344
Normal
0.2
138
Normal
0.2
666
Normal
0.2
882
Normal
0.2
227
Tumor
0.2
877
Tumor
0.2
447
Tumor
0.2
432
Normal
0.2
976
Normal
0.2
328
Normal
0.2
188
Normal
0.2
526
Normal
0.2
343
Tumor
0.2
618
Normal
0.2
912
Normal
0.2
671
Tumor
0.2
916
Normal
0.2
366
Normal
0.2
356
Normal
0.2
1028
Normal
0.2
364
Normal
0.2
818
Normal
0.2
786
Normal
0.2
456
Normal
0.2
363
Tumor
0.2
352
Normal
0.2
136
Normal
0.2
814
Normal
0.2
944
Normal
0.2
686
Normal
0.2
212
Normal
0.2
412
Normal
0.2
721
Tumor
0.2
218
Normal
0.2
813
Tumor
0.2
492
Normal
0.1
824
Normal
0.1
628
Normal
0.1
341
Tumor
0.1
514
Normal
0.1
1044
Normal
0.1
1026
Normal
0.1
572
Normal
0.1
472
Normal
0.1
958
Normal
0.1
956
Normal
0.1
866
Normal
0.1
926
Normal
0.1
353
Tumor
0.1
468
Normal
0.1
375
Tumor
0.1
756
Normal
0.1
354
Normal
0.1
195
Tumor
0.1
383
Tumor
0.1
386
Normal
0.1
943
Tumor
0.1
636
Normal
0.1
395
Tumor
0.1
135
Tumor
0.1
568
Normal
0.1
474
Normal
0.1
921
Tumor
0.1
955
Tumor
0.1
728
Normal
0.1
878
Normal
0.1
232
Normal
0.1
258
Normal
0.1
742
Normal
0.1
922
Normal
0.1
416
Normal
0.1
983
Tumor
0.1
918
Normal
0.1
463
Tumor
0.1
426
Normal
0.1
685
Tumor
0.1
464
Normal
0.1
858
Normal
0.1
864
Normal
0.1
663
Tumor
0.1
722
Normal
0.1
342
Normal
0.1
567
Tumor
0.1
523
Tumor
0.1
1021
Tumor
0.1
696
Normal
0.1
982
Normal
0.1
716
Normal
0.1
557
Tumor
0.1
142
Normal
0.1
744
Normal
0.1
196
Normal
0.1
714
Normal
0.1
494
Normal
0.1
868
Normal
0.1
161
Tumor
0.0
214
Normal
0.0
376
Normal
0.0
1042
Normal
0.0
1032
Normal
0.0
564
Normal
0.0
515
Tumor
0.0
434
Normal
0.0
358
Normal
0.0
1015
Tumor
0.0
617
Tumor
0.0
488
Normal
0.0
881
Tumor
0.0
953
Tumor
0.0
332
Normal
0.0
145
Tumor
0.0
312
Normal
0.0
546
Normal
0.0
187
Tumor
0.0
482
Normal
0.0
392
Normal
0.0
427
Tumor
0.0
368
Normal
0.0
964
Normal
0.0
172
Normal
0.0
428
Normal
0.0
221
Tumor
0.0
884
Normal
0.0
436
Normal
0.0
874
Normal
0.0
185
Tumor
0.0
132
Normal
0.0
462
Normal
0.0
367
Tumor
0.0
191
Tumor
0.0
331
Tumor
0.0
394
Normal
0.0
537
Tumor
0.0
466
Normal
0.0
1014
Normal
0.0
534
Normal
0.0
862
Normal
0.0
924
Normal
0.0
863
Tumor
0.0
162
Normal
0.0
396
Normal
0.0
968
Normal
0.0
493
Tumor
0.0
785
Tumor
0.0
128
Normal
0.0
963
Tumor
0.0
186
Normal
0.0
424
Normal
-0.1
461
Tumor
-0.1
448
Normal
-0.1
746
Normal
-0.1
484
Normal
-0.1
865
Tumor
-0.1
415
Tumor
-0.1
297
Tumor
-0.1
975
Tumor
-0.1
951
Tumor
-0.1
727
Tumor
-0.1
913
Tumor
-0.1
665
Tumor
-0.1
421
Tumor
-0.1
545
Tumor
-0.1
471
Tumor
-0.1
314
Normal
-0.1
553
Tumor
-0.1
222
Normal
-0.1
446
Normal
-0.1
231
Tumor
-0.1
697
Tumor
-0.1
422
Normal
-0.1
278
Normal
-0.1
148
Normal
-0.1
698
Normal
-0.1
298
Normal
-0.1
984
Normal
-0.1
1043
Tumor
-0.1
257
Tumor
-0.1
823
Tumor
-0.1
867
Tumor
-0.2
413
Tumor
-0.2
261
Tumor
-0.2
517
Tumor
-0.2
533
Tumor
-0.2
388
Normal
-0.2
915
Tumor
-0.2
1031
Tumor
-0.2
861
Tumor
-0.2
497
Tumor
-0.2
925
Tumor
-0.2
635
Tumor
-0.2
817
Tumor
-0.2
123
Tumor
-0.2
554
Normal
-0.2
131
Tumor
-0.2
365
Tumor
-0.2
481
Tumor
-0.2
1046
Normal
-0.3
965
Tumor
-0.3
715
Tumor
-0.3
277
Tumor
-0.3
137
Tumor
-0.3
627
Tumor
-0.3
361
Tumor
-0.3
923
Tumor
-0.3
1045
Tumor
-0.3
313
Tumor
-0.3
387
Tumor
-0.3
271
Tumor
-0.3
873
Tumor
-0.3
443
Tumor
-0.3
411
Tumor
-0.3
1025
Tumor
-0.3
355
Tumor
-0.3
737
Tumor
-0.3
981
Tumor
-0.4
423
Tumor
-0.4
937
Tumor
-0.4
883
Tumor
-0.4
571
Tumor
-0.4
816
Normal
-0.4
695
Tumor
-0.4
391
Tumor
-0.4
755
Tumor
-0.4
741
Tumor
-0.4
483
Tumor
-0.4
957
Tumor
-0.4
615
Tumor
-0.4
431
Tumor
-0.4
267
Tumor
-0.4
477
Tumor
-0.4
141
Tumor
-0.5
815
Tumor
-0.5
647
Tumor
-0.5
911
Tumor
-0.5
1041
Tumor
-0.5
527
Tumor
-0.5
112
Tumor
-0.5
445
Tumor
-0.5
127
Tumor
-0.5
433
Tumor
-0.6
171
Tumor
-0.6
1013
Tumor
-0.6
357
Tumor
-0.6
435
Tumor
-0.6
473
Tumor
-0.6
425
Tumor
-0.6
977
Tumor
-0.7
393
Tumor
-0.7
743
Tumor
-0.8
487
Tumor
-0.8
465
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
