MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.3 nTPM
HPA Brain:41.2 nTPM
GTEx:16.3 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:52.7 nTPM
Mouse:111.4 nTPM
Allen mouse:5.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.3
2019 Male, age 18, unknown 42.5
1870 Female, age 42, unknown 41.8
2411 Female, age 72, unknown 39.8
1827 Male, age 72, unknown 39.5
1830 Male, age 51, unknown 37.7
1833 Male, age 53, unknown 36.3
2666 Male, age 74, left hemisphere 35.9
2219 Male, age 76, both hemispheres 33.9
2828 Female, age 72, unknown 33.0
2586 Male, age 75, left hemisphere 32.4
Dorsal raphe nucleus
nTPM: 41.2
2298 Female, age 72, unknown 45.2
2047 Male, age 72, unknown 44.9
2750 Male, age 76, both hemispheres 40.1
1828 Male, age 53, unknown 38.7
2016 Female, age 72, unknown 37.3
Inferior colliculus
nTPM: 35.8
2097 Female, age 72, unknown 41.3
1848 Female, age 42, unknown 35.4
1890 Male, age 53, unknown 35.3
2849 Male, age 72, unknown 31.2
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Periaquaductal grey, anterior
nTPM: 37.6
2502 Female, age 75, unknown 40.9
1947 Male, age 18, unknown 36.2
1795 Male, age 51, unknown 35.8
Periaquaductal grey, dorsal
nTPM: 33.8
2464 Female, age 72, unknown 35.4
2850 Male, age 76, both hemispheres 33.9
1831 Male, age 72, unknown 33.4
1840 Male, age 53, unknown 32.4
Periaquaductal grey, lateral
nTPM: 32.6
2272 Male, age 74, both hemispheres 33.9
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 31.5
Pretectal area
nTPM: 36.9
2007 Male, age 72, unknown 41.3
1944 Female, age 72, unknown 40.3
1816 Male, age 51, unknown 39.4
1817 Female, age 42, unknown 37.4
2224 Female, age 72, unknown 36.7
2273 Male, age 74, both hemispheres 36.7
1815 Male, age 53, unknown 35.9
2667 Female, age 75, unknown 35.2
2825 Male, age 18, unknown 34.9
2316 Male, age 76, right hemisphere 34.7
2407 Male, age 75, both hemispheres 33.7
Red nucleus
nTPM: 37.6
1821 Female, age 72, unknown 44.2
2503 Female, age 72, unknown 40.6
1904 Male, age 53, unknown 40.5
1954 Female, age 42, unknown 39.8
2588 Male, age 74, left hemisphere 37.3
2785 Male, age 18, unknown 37.3
1865 Male, age 51, unknown 37.1
2227 Male, age 72, unknown 36.8
2769 Male, age 72, unknown 35.4
2584 Male, age 75, left hemisphere 35.1
2823 Male, age 76, right hemisphere 33.9
2725 Female, age 75, unknown 33.5
Substantia nigra
nTPM: 38.2
1941 Male, age 53, unknown 44.6
1916 Female, age 42, unknown 44.4
1889 Female, age 72, unknown 41.1
2241 Male, age 72, unknown 40.7
1851 Male, age 51, unknown 40.4
2590 Female, age 75, unknown 38.5
2699 Male, age 18, unknown 35.8
2583 Male, age 75, right hemisphere 33.7
2665 Male, age 74, both hemispheres 32.0
2409 Female, age 72, unknown 30.5
Superior colliculus
nTPM: 36.2
2587 Male, age 74, left hemisphere 38.5
2668 Female, age 75, unknown 38.4
1913 Female, age 42, unknown 37.9
2087 Female, age 72, unknown 37.2
2664 Male, age 75, both hemispheres 37.2
2261 Male, age 18, unknown 36.9
1895 Male, age 76, right hemisphere 36.3
1796 Male, age 53, unknown 34.4
1839 Male, age 51, unknown 32.9
1995 Male, age 72, unknown 32.1
Ventral tegmental area
nTPM: 37.0
1915 Female, age 42, unknown 38.6
2223 Female, age 72, unknown 37.5
1942 Male, age 51, unknown 37.1
2410 Female, age 72, unknown 36.9
2218 Male, age 76, both hemispheres 35.9
2021 Male, age 53, unknown 35.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 16.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.3
Samples: 139

Max nTPM: 24.2
Min nTPM: 9.4
Std nTPM: 3.0
Median nTPM: 15.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 24.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 24.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 23.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 23.5
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 22.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 21.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 21.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 21.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.0
FF:10158-103A5 76 years, female 66.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 51.5
Min nTPM: 29.9
Sample A Female 50.8
Sample B Female 51.5
Sample C Male 47.1
Sample D Male 29.9
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 48.3
Min nTPM: 42.0
Sample A Female 43.8
Sample B Female 48.0
Sample C Male 48.3
Sample D Male 42.0
Periaqueductal gray
nTPM: 37.9
Samples: 3

Max nTPM: 40.2
Min nTPM: 35.8
Sample B Female 35.8
Sample C Male 40.2
Sample D Male 37.8
Superior colliculi
nTPM: 52.7
Samples: 4

Max nTPM: 70.8
Min nTPM: 40.5
Sample A Female 51.2
Sample B Female 70.8
Sample C Male 48.1
Sample D Male 40.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 111.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 111.4
Samples: 4

Max nTPM: 115.8
Min nTPM: 106.7
Sample A Male 115.8
Sample B Male 111.3
Sample C Female 106.7
Sample D Female 111.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.0
69352852 Antisense, RP_050412_01_C07, Mouse strain C57BL/6J (56 days, male) 5.0

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