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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
146.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
135.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
110.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
102.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
102.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
102.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
95.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
90.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
85.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
84.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
84.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
83.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
83.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
78.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
78.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
78.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
76.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
75.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
75.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
75.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
75.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
74.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
74.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
74.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
74.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
73.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
73.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
72.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
71.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
71.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
71.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
71.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
70.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
70.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
69.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
69.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
69.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
69.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
69.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
69.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
68.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
68.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
68.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
67.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
67.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
66.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
65.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
65.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
65.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
64.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
64.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
63.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
63.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
63.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
63.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
62.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
62.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
62.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
61.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
61.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
61.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
60.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
60.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
59.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
59.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
58.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
58.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
57.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
57.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
57.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
57.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
56.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
56.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
56.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
55.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
55.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
55.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
55.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
55.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
55.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
54.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
54.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
54.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
54.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
54.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
53.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
53.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
53.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
53.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
53.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
53.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
52.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
52.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
52.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
52.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
52.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
52.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
51.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
51.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
51.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
50.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
50.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
50.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
50.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
50.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
49.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
49.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
49.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
48.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
47.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
47.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
47.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
47.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
46.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
46.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
46.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
46.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
46.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
46.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
45.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
45.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
45.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
45.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
45.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
44.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
44.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
44.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
44.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
44.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
43.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
43.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
43.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
43.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
43.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
43.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
43.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
42.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
42.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
42.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
42.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
41.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
41.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
41.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
41.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
41.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
40.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
40.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
40.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
40.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
40.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
40.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
40.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
39.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
39.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
39.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
39.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
39.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
39.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
39.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
39.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
39.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
38.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
37.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
37.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
37.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
37.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
36.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
36.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
36.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
36.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
36.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
36.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
36.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
35.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
35.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
35.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
35.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
35.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
35.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
34.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
34.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
34.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
33.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
33.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
32.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
32.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
32.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
32.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
32.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
32.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
32.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
32.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
31.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
31.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
31.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
31.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
31.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
30.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
30.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
30.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
29.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
29.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
29.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
29.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
29.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
28.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
28.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
27.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
27.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
26.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
26.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
25.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
25.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
24.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
24.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
23.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
18.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
15.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
THOC7 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.7
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
112.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
99.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
87.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
78.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
75.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
73.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
69.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
68.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
67.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
66.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
64.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
64.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
62.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
61.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
60.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
58.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
57.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
56.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
56.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
54.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
54.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
54.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
53.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
52.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
52.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
52.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
51.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
51.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
51.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
50.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
49.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
49.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
48.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
48.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
47.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
46.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
45.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
44.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
44.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
44.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
43.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
43.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
43.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
42.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
41.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
41.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
41.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
40.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
40.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
39.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
39.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
38.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
38.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
38.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
38.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
38.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
38.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
37.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
37.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
36.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
36.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
36.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
36.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
36.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
36.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
36.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
35.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
35.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
35.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
35.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
34.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
34.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
33.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
33.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
32.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
32.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
32.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
32.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
32.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
31.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
30.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
30.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
29.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
29.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
28.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
28.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
27.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
27.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
26.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
26.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
26.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
26.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
17.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.3
1013
Tumor
1.1
815
Tumor
1.0
473
Tumor
1.0
951
Tumor
0.9
685
Tumor
0.9
313
Tumor
0.9
527
Tumor
0.9
431
Tumor
0.9
983
Tumor
0.8
977
Tumor
0.8
647
Tumor
0.8
131
Tumor
0.8
112
Tumor
0.8
965
Tumor
0.8
865
Tumor
0.8
425
Tumor
0.7
277
Tumor
0.7
883
Tumor
0.7
411
Tumor
0.6
695
Tumor
0.6
967
Tumor
0.6
1021
Tumor
0.6
483
Tumor
0.6
957
Tumor
0.6
387
Tumor
0.6
537
Tumor
0.6
545
Tumor
0.6
963
Tumor
0.6
367
Tumor
0.6
331
Tumor
0.6
413
Tumor
0.6
211
Tumor
0.6
665
Tumor
0.5
383
Tumor
0.5
171
Tumor
0.5
663
Tumor
0.5
737
Tumor
0.5
975
Tumor
0.5
385
Tumor
0.5
493
Tumor
0.5
231
Tumor
0.5
427
Tumor
0.5
465
Tumor
0.5
661
Tumor
0.5
857
Tumor
0.5
375
Tumor
0.5
285
Tumor
0.5
881
Tumor
0.5
953
Tumor
0.5
873
Tumor
0.4
937
Tumor
0.4
743
Tumor
0.4
523
Tumor
0.4
395
Tumor
0.4
817
Tumor
0.4
357
Tumor
0.4
535
Tumor
0.4
851
Tumor
0.4
343
Tumor
0.3
283
Tumor
0.3
724
Normal
0.3
641
Tumor
0.3
557
Tumor
0.3
913
Tumor
0.3
727
Tumor
0.3
271
Tumor
0.3
925
Tumor
0.3
445
Tumor
0.3
351
Tumor
0.3
671
Tumor
0.3
877
Tumor
0.3
341
Tumor
0.3
943
Tumor
0.3
463
Tumor
0.3
721
Tumor
0.3
227
Tumor
0.3
467
Tumor
0.3
525
Tumor
0.3
355
Tumor
0.3
863
Tumor
0.3
567
Tumor
0.3
221
Tumor
0.3
391
Tumor
0.3
471
Tumor
0.2
421
Tumor
0.2
217
Tumor
0.2
297
Tumor
0.2
923
Tumor
0.2
433
Tumor
0.2
627
Tumor
0.2
741
Tumor
0.2
513
Tumor
0.2
1031
Tumor
0.2
267
Tumor
0.2
715
Tumor
0.2
785
Tumor
0.2
311
Tumor
0.2
491
Tumor
0.2
517
Tumor
0.2
213
Tumor
0.2
185
Tumor
0.2
443
Tumor
0.2
533
Tumor
0.2
161
Tumor
0.2
573
Tumor
0.2
487
Tumor
0.2
777
Tumor
0.1
813
Tumor
0.1
455
Tumor
0.1
571
Tumor
0.1
125
Tumor
0.1
461
Tumor
0.1
135
Tumor
0.1
921
Tumor
0.1
642
Normal
0.1
515
Tumor
0.1
435
Tumor
0.1
147
Tumor
0.1
553
Tumor
0.1
191
Tumor
0.1
447
Tumor
0.1
635
Tumor
0.1
814
Normal
0.1
861
Tumor
0.1
697
Tumor
0.1
127
Tumor
0.1
756
Normal
0.0
481
Tumor
0.0
492
Normal
0.0
617
Tumor
0.0
393
Tumor
0.0
123
Tumor
0.0
195
Tumor
0.0
538
Normal
0.0
745
Tumor
0.0
1045
Tumor
0.0
141
Tumor
0.0
363
Tumor
0.0
1015
Tumor
0.0
917
Tumor
0.0
823
Tumor
0.0
361
Tumor
0.0
955
Tumor
0.0
563
Tumor
0.0
192
Normal
0.0
1025
Tumor
0.0
981
Tumor
0.0
713
Tumor
-0.1
423
Tumor
-0.1
1027
Tumor
-0.1
477
Tumor
-0.1
332
Normal
-0.1
451
Tumor
-0.1
498
Normal
-0.1
224
Normal
-0.1
261
Tumor
-0.1
386
Normal
-0.1
1041
Tumor
-0.1
452
Normal
-0.1
222
Normal
-0.1
314
Normal
-0.1
686
Normal
-0.1
187
Tumor
-0.1
196
Normal
-0.1
786
Normal
-0.1
524
Normal
-0.1
113
Tumor
-0.1
662
Normal
-0.1
394
Normal
-0.1
976
Normal
-0.1
778
Normal
-0.1
966
Normal
-0.1
494
Normal
-0.1
415
Tumor
-0.1
911
Tumor
-0.1
365
Tumor
-0.1
137
Tumor
-0.2
534
Normal
-0.2
384
Normal
-0.2
1032
Normal
-0.2
286
Normal
-0.2
755
Tumor
-0.2
128
Normal
-0.2
218
Normal
-0.2
546
Normal
-0.2
1043
Tumor
-0.2
574
Normal
-0.2
636
Normal
-0.2
572
Normal
-0.2
867
Tumor
-0.2
672
Normal
-0.2
528
Normal
-0.2
312
Normal
-0.2
628
Normal
-0.2
618
Normal
-0.2
514
Normal
-0.2
696
Normal
-0.2
915
Tumor
-0.2
298
Normal
-0.2
484
Normal
-0.2
954
Normal
-0.2
664
Normal
-0.2
536
Normal
-0.2
466
Normal
-0.2
257
Tumor
-0.2
284
Normal
-0.2
716
Normal
-0.2
396
Normal
-0.2
526
Normal
-0.2
722
Normal
-0.2
364
Normal
-0.2
818
Normal
-0.2
444
Normal
-0.2
666
Normal
-0.2
1022
Normal
-0.2
126
Normal
-0.2
564
Normal
-0.2
554
Normal
-0.2
356
Normal
-0.2
464
Normal
-0.2
268
Normal
-0.2
1014
Normal
-0.2
488
Normal
-0.2
328
Normal
-0.3
978
Normal
-0.3
858
Normal
-0.3
558
Normal
-0.3
478
Normal
-0.3
964
Normal
-0.3
232
Normal
-0.3
388
Normal
-0.3
914
Normal
-0.3
746
Normal
-0.3
434
Normal
-0.3
938
Normal
-0.3
392
Normal
-0.3
482
Normal
-0.3
278
Normal
-0.3
958
Normal
-0.3
516
Normal
-0.3
878
Normal
-0.3
816
Normal
-0.3
188
Normal
-0.3
145
Tumor
-0.3
616
Normal
-0.3
568
Normal
-0.3
648
Normal
-0.3
124
Normal
-0.3
212
Normal
-0.3
714
Normal
-0.3
956
Normal
-0.3
824
Normal
-0.3
366
Normal
-0.3
228
Normal
-0.3
518
Normal
-0.3
944
Normal
-0.3
114
Normal
-0.3
223
Tumor
-0.3
952
Normal
-0.3
982
Normal
-0.3
376
Normal
-0.3
272
Normal
-0.3
984
Normal
-0.3
432
Normal
-0.3
446
Normal
-0.3
882
Normal
-0.3
1028
Normal
-0.3
214
Normal
-0.3
1046
Normal
-0.3
436
Normal
-0.3
918
Normal
-0.3
412
Normal
-0.3
922
Normal
-0.4
698
Normal
-0.4
142
Normal
-0.4
926
Normal
-0.4
968
Normal
-0.4
884
Normal
-0.4
344
Normal
-0.4
353
Tumor
-0.4
1042
Normal
-0.4
186
Normal
-0.4
864
Normal
-0.4
111
Normal
-0.4
924
Normal
-0.4
744
Normal
-0.4
852
Normal
-0.4
1044
Normal
-0.4
416
Normal
-0.4
456
Normal
-0.4
162
Normal
-0.4
262
Normal
-0.4
146
Normal
-0.4
912
Normal
-0.4
866
Normal
-0.4
258
Normal
-0.4
368
Normal
-0.4
138
Normal
-0.4
1016
Normal
-0.4
1026
Normal
-0.4
448
Normal
-0.4
362
Normal
-0.4
868
Normal
-0.4
354
Normal
-0.4
462
Normal
-0.4
172
Normal
-0.4
474
Normal
-0.5
327
Tumor
-0.5
468
Normal
-0.5
352
Normal
-0.5
148
Normal
-0.5
916
Normal
-0.5
136
Normal
-0.5
615
Tumor
-0.5
742
Normal
-0.5
426
Normal
-0.5
472
Normal
-0.5
738
Normal
-0.5
874
Normal
-0.5
862
Normal
-0.5
728
Normal
-0.5
723
Tumor
-0.5
132
Normal
-0.5
414
Normal
-0.5
422
Normal
-0.6
424
Normal
-0.6
428
Normal
-0.6
358
Normal
-0.6
342
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
