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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP4R2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
45.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
45.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
43.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
40.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
37.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
36.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
32.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
32.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
30.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
28.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
27.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
27.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
26.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
26.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
25.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
25.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
25.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
24.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
23.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
23.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
21.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
20.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
18.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
18.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
15.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
15.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
15.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
14.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP4R2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.3
Number of samples
231
Samples
Sample
Description
TPM
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
58.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
57.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
52.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
51.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
47.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
47.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
47.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
47.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
40.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
39.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
38.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
37.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
36.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
36.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
35.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
34.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
33.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
31.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
30.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
30.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
27.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
26.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
26.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
25.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
24.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
24.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
22.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
22.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
22.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
21.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
20.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
17.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
817
Tumor
1.3
285
Tumor
1.2
131
Tumor
1.2
965
Tumor
1.0
221
Tumor
1.0
951
Tumor
1.0
271
Tumor
0.9
743
Tumor
0.8
471
Tumor
0.8
921
Tumor
0.8
975
Tumor
0.8
865
Tumor
0.8
277
Tumor
0.8
385
Tumor
0.7
227
Tumor
0.7
473
Tumor
0.7
553
Tumor
0.7
661
Tumor
0.6
535
Tumor
0.6
737
Tumor
0.6
411
Tumor
0.6
463
Tumor
0.6
957
Tumor
0.6
815
Tumor
0.5
523
Tumor
0.5
1021
Tumor
0.5
187
Tumor
0.5
695
Tumor
0.5
477
Tumor
0.5
1031
Tumor
0.5
881
Tumor
0.5
533
Tumor
0.5
641
Tumor
0.5
357
Tumor
0.5
983
Tumor
0.5
977
Tumor
0.5
413
Tumor
0.4
877
Tumor
0.4
943
Tumor
0.4
445
Tumor
0.4
331
Tumor
0.4
341
Tumor
0.4
355
Tumor
0.4
727
Tumor
0.4
427
Tumor
0.3
487
Tumor
0.3
917
Tumor
0.3
953
Tumor
0.3
517
Tumor
0.3
981
Tumor
0.3
497
Tumor
0.3
755
Tumor
0.3
967
Tumor
0.3
963
Tumor
0.3
431
Tumor
0.3
1015
Tumor
0.3
863
Tumor
0.3
1041
Tumor
0.3
211
Tumor
0.2
257
Tumor
0.2
283
Tumor
0.2
141
Tumor
0.2
447
Tumor
0.2
351
Tumor
0.2
297
Tumor
0.2
261
Tumor
0.2
955
Tumor
0.2
937
Tumor
0.2
1043
Tumor
0.2
135
Tumor
0.2
715
Tumor
0.2
363
Tumor
0.2
515
Tumor
0.2
883
Tumor
0.2
814
Normal
0.2
513
Tumor
0.2
367
Tumor
0.2
777
Tumor
0.2
493
Tumor
0.2
685
Tumor
0.2
455
Tumor
0.1
923
Tumor
0.1
461
Tumor
0.1
665
Tumor
0.1
873
Tumor
0.1
137
Tumor
0.1
1025
Tumor
0.1
481
Tumor
0.1
478
Normal
0.1
423
Tumor
0.1
813
Tumor
0.1
525
Tumor
0.1
537
Tumor
0.1
915
Tumor
0.1
671
Tumor
0.1
861
Tumor
0.1
491
Tumor
0.1
185
Tumor
0.1
365
Tumor
0.1
482
Normal
0.1
527
Tumor
0.1
554
Normal
0.1
425
Tumor
0.1
267
Tumor
0.1
567
Tumor
0.1
867
Tumor
0.1
415
Tumor
0.0
467
Tumor
0.0
213
Tumor
0.0
741
Tumor
0.0
343
Tumor
0.0
534
Normal
0.0
472
Normal
0.0
724
Normal
0.0
697
Tumor
0.0
944
Normal
0.0
984
Normal
0.0
545
Tumor
0.0
465
Tumor
0.0
1045
Tumor
0.0
851
Tumor
0.0
474
Normal
0.0
1026
Normal
0.0
966
Normal
0.0
1014
Normal
0.0
524
Normal
0.0
878
Normal
0.0
882
Normal
0.0
451
Tumor
0.0
223
Tumor
0.0
546
Normal
0.0
375
Tumor
0.0
483
Tumor
0.0
147
Tumor
0.0
433
Tumor
0.0
922
Normal
0.0
918
Normal
0.0
713
Tumor
0.0
615
Tumor
0.0
191
Tumor
0.0
112
Tumor
0.0
161
Tumor
-0.1
518
Normal
-0.1
387
Tumor
-0.1
952
Normal
-0.1
976
Normal
-0.1
443
Tumor
-0.1
217
Tumor
-0.1
492
Normal
-0.1
663
Tumor
-0.1
557
Tumor
-0.1
778
Normal
-0.1
313
Tumor
-0.1
196
Normal
-0.1
393
Tumor
-0.1
954
Normal
-0.1
857
Tumor
-0.1
745
Tumor
-0.1
127
Tumor
-0.1
926
Normal
-0.1
361
Tumor
-0.1
968
Normal
-0.1
938
Normal
-0.1
123
Tumor
-0.1
298
Normal
-0.1
462
Normal
-0.1
647
Tumor
-0.1
958
Normal
-0.1
1016
Normal
-0.1
412
Normal
-0.1
858
Normal
-0.1
498
Normal
-0.1
484
Normal
-0.1
311
Tumor
-0.1
195
Tumor
-0.1
1027
Tumor
-0.1
956
Normal
-0.1
536
Normal
-0.1
212
Normal
-0.1
714
Normal
-0.1
698
Normal
-0.1
756
Normal
-0.1
924
Normal
-0.1
978
Normal
-0.1
416
Normal
-0.1
982
Normal
-0.1
391
Tumor
-0.1
224
Normal
-0.1
696
Normal
-0.1
911
Tumor
-0.2
538
Normal
-0.2
312
Normal
-0.2
125
Tumor
-0.2
528
Normal
-0.2
466
Normal
-0.2
916
Normal
-0.2
428
Normal
-0.2
1042
Normal
-0.2
786
Normal
-0.2
526
Normal
-0.2
516
Normal
-0.2
356
Normal
-0.2
818
Normal
-0.2
884
Normal
-0.2
231
Tumor
-0.2
785
Tumor
-0.2
448
Normal
-0.2
421
Tumor
-0.2
218
Normal
-0.2
1028
Normal
-0.2
722
Normal
-0.2
113
Tumor
-0.2
364
Normal
-0.2
327
Tumor
-0.2
488
Normal
-0.2
314
Normal
-0.2
222
Normal
-0.2
824
Normal
-0.2
913
Tumor
-0.2
823
Tumor
-0.2
436
Normal
-0.2
228
Normal
-0.2
284
Normal
-0.2
192
Normal
-0.2
142
Normal
-0.2
426
Normal
-0.2
494
Normal
-0.2
874
Normal
-0.2
286
Normal
-0.2
268
Normal
-0.2
866
Normal
-0.2
435
Tumor
-0.2
328
Normal
-0.2
424
Normal
-0.2
146
Normal
-0.2
422
Normal
-0.2
862
Normal
-0.2
627
Tumor
-0.2
353
Tumor
-0.3
362
Normal
-0.3
716
Normal
-0.3
864
Normal
-0.3
738
Normal
-0.3
383
Tumor
-0.3
452
Normal
-0.3
464
Normal
-0.3
744
Normal
-0.3
914
Normal
-0.3
1013
Tumor
-0.3
384
Normal
-0.3
444
Normal
-0.3
816
Normal
-0.3
618
Normal
-0.3
126
Normal
-0.3
514
Normal
-0.3
912
Normal
-0.3
414
Normal
-0.3
468
Normal
-0.3
111
Normal
-0.3
214
Normal
-0.3
964
Normal
-0.3
344
Normal
-0.3
746
Normal
-0.3
456
Normal
-0.3
376
Normal
-0.3
1022
Normal
-0.3
925
Tumor
-0.3
868
Normal
-0.3
332
Normal
-0.3
145
Tumor
-0.3
1046
Normal
-0.3
628
Normal
-0.3
188
Normal
-0.3
392
Normal
-0.3
342
Normal
-0.3
446
Normal
-0.3
262
Normal
-0.3
114
Normal
-0.3
617
Tumor
-0.3
148
Normal
-0.3
162
Normal
-0.3
136
Normal
-0.3
138
Normal
-0.3
664
Normal
-0.3
648
Normal
-0.3
434
Normal
-0.3
723
Tumor
-0.3
728
Normal
-0.3
742
Normal
-0.3
432
Normal
-0.3
128
Normal
-0.3
124
Normal
-0.3
386
Normal
-0.4
686
Normal
-0.4
852
Normal
-0.4
574
Normal
-0.4
1032
Normal
-0.4
352
Normal
-0.4
368
Normal
-0.4
721
Tumor
-0.4
278
Normal
-0.4
171
Tumor
-0.4
395
Tumor
-0.4
662
Normal
-0.4
366
Normal
-0.4
186
Normal
-0.4
563
Tumor
-0.4
666
Normal
-0.4
354
Normal
-0.4
568
Normal
-0.4
636
Normal
-0.4
172
Normal
-0.4
132
Normal
-0.4
571
Tumor
-0.4
573
Tumor
-0.4
564
Normal
-0.5
388
Normal
-0.5
394
Normal
-0.5
258
Normal
-0.5
642
Normal
-0.5
1044
Normal
-0.5
232
Normal
-0.5
272
Normal
-0.5
396
Normal
-0.5
358
Normal
-0.5
616
Normal
-0.5
672
Normal
-0.6
572
Normal
-0.6
558
Normal
-0.6
635
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
