We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
1.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RYBP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.2
Number of samples
231
Samples
Sample
Description
TPM
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
12.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
8.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
411
Tumor
1.7
131
Tumor
1.5
285
Tumor
1.2
965
Tumor
1.0
435
Tumor
1.0
517
Tumor
0.9
815
Tumor
0.9
515
Tumor
0.9
283
Tumor
0.9
963
Tumor
0.9
865
Tumor
0.9
415
Tumor
0.9
313
Tumor
0.8
695
Tumor
0.8
355
Tumor
0.8
523
Tumor
0.8
647
Tumor
0.8
737
Tumor
0.8
211
Tumor
0.8
473
Tumor
0.8
943
Tumor
0.7
951
Tumor
0.7
513
Tumor
0.7
921
Tumor
0.7
436
Normal
0.7
1013
Tumor
0.7
533
Tumor
0.7
968
Normal
0.7
743
Tumor
0.7
497
Tumor
0.6
363
Tumor
0.6
525
Tumor
0.6
727
Tumor
0.6
311
Tumor
0.6
277
Tumor
0.6
777
Tumor
0.6
964
Normal
0.6
534
Normal
0.6
482
Normal
0.6
873
Tumor
0.6
553
Tumor
0.5
331
Tumor
0.5
524
Normal
0.5
663
Tumor
0.5
953
Tumor
0.5
554
Normal
0.5
446
Normal
0.5
917
Tumor
0.5
528
Normal
0.5
977
Tumor
0.5
937
Tumor
0.4
778
Normal
0.4
881
Tumor
0.4
923
Tumor
0.4
954
Normal
0.4
851
Tumor
0.4
863
Tumor
0.4
546
Normal
0.4
433
Tumor
0.4
966
Normal
0.4
883
Tumor
0.4
785
Tumor
0.4
741
Tumor
0.4
481
Tumor
0.4
161
Tumor
0.4
567
Tumor
0.4
478
Normal
0.4
724
Normal
0.4
817
Tumor
0.4
491
Tumor
0.4
958
Normal
0.3
661
Tumor
0.3
537
Tumor
0.3
957
Tumor
0.3
431
Tumor
0.3
471
Tumor
0.3
171
Tumor
0.3
472
Normal
0.3
744
Normal
0.3
445
Tumor
0.3
516
Normal
0.3
412
Normal
0.3
685
Tumor
0.3
786
Normal
0.3
385
Tumor
0.2
392
Normal
0.2
913
Tumor
0.2
447
Tumor
0.2
492
Normal
0.2
878
Normal
0.2
877
Tumor
0.2
391
Tumor
0.2
123
Tumor
0.2
538
Normal
0.2
1031
Tumor
0.2
915
Tumor
0.2
944
Normal
0.2
396
Normal
0.2
387
Tumor
0.2
813
Tumor
0.2
297
Tumor
0.2
312
Normal
0.2
461
Tumor
0.2
432
Normal
0.2
983
Tumor
0.2
474
Normal
0.2
462
Normal
0.2
141
Tumor
0.2
715
Tumor
0.2
493
Tumor
0.2
386
Normal
0.2
976
Normal
0.2
394
Normal
0.1
918
Normal
0.1
1043
Tumor
0.1
697
Tumor
0.1
147
Tumor
0.1
416
Normal
0.1
975
Tumor
0.1
487
Tumor
0.1
756
Normal
0.1
356
Normal
0.1
514
Normal
0.1
364
Normal
0.1
488
Normal
0.1
912
Normal
0.1
498
Normal
0.1
395
Tumor
0.1
434
Normal
0.1
477
Tumor
0.1
1016
Normal
0.1
484
Normal
0.1
185
Tumor
0.1
882
Normal
0.1
224
Normal
0.1
278
Normal
0.1
952
Normal
0.1
938
Normal
0.1
922
Normal
0.1
1026
Normal
0.1
1021
Tumor
0.1
1028
Normal
0.1
984
Normal
0.1
698
Normal
0.1
388
Normal
0.1
755
Tumor
0.1
518
Normal
0.1
728
Normal
0.0
713
Tumor
0.0
738
Normal
0.0
665
Tumor
0.0
535
Tumor
0.0
1014
Normal
0.0
298
Normal
0.0
816
Normal
0.0
328
Normal
0.0
861
Tumor
0.0
745
Tumor
0.0
721
Tumor
0.0
483
Tumor
0.0
982
Normal
0.0
884
Normal
0.0
1045
Tumor
0.0
924
Normal
0.0
866
Normal
0.0
332
Normal
0.0
814
Normal
0.0
393
Tumor
0.0
526
Normal
0.0
443
Tumor
0.0
955
Tumor
0.0
444
Normal
0.0
1032
Normal
0.0
1046
Normal
0.0
1042
Normal
0.0
926
Normal
0.0
545
Tumor
0.0
227
Tumor
0.0
112
Tumor
-0.1
716
Normal
-0.1
746
Normal
-0.1
327
Tumor
-0.1
527
Tumor
-0.1
494
Normal
-0.1
978
Normal
-0.1
916
Normal
-0.1
125
Tumor
-0.1
1022
Normal
-0.1
148
Normal
-0.1
686
Normal
-0.1
874
Normal
-0.1
714
Normal
-0.1
314
Normal
-0.1
925
Tumor
-0.1
956
Normal
-0.1
723
Tumor
-0.1
142
Normal
-0.1
981
Tumor
-0.1
572
Normal
-0.2
127
Tumor
-0.2
914
Normal
-0.2
536
Normal
-0.2
284
Normal
-0.2
563
Tumor
-0.2
223
Tumor
-0.2
162
Normal
-0.2
671
Tumor
-0.2
186
Normal
-0.2
286
Normal
-0.2
742
Normal
-0.2
867
Tumor
-0.2
187
Tumor
-0.2
1041
Tumor
-0.2
1025
Tumor
-0.2
868
Normal
-0.2
212
Normal
-0.2
564
Normal
-0.2
722
Normal
-0.2
864
Normal
-0.2
696
Normal
-0.2
1015
Tumor
-0.2
558
Normal
-0.2
911
Tumor
-0.2
857
Tumor
-0.2
664
Normal
-0.2
557
Tumor
-0.2
1044
Normal
-0.2
818
Normal
-0.2
188
Normal
-0.3
662
Normal
-0.3
672
Normal
-0.3
858
Normal
-0.3
228
Normal
-0.3
135
Tumor
-0.3
574
Normal
-0.3
648
Normal
-0.3
113
Tumor
-0.3
365
Tumor
-0.3
137
Tumor
-0.3
448
Normal
-0.3
172
Normal
-0.4
571
Tumor
-0.4
568
Normal
-0.4
384
Normal
-0.4
824
Normal
-0.4
666
Normal
-0.4
852
Normal
-0.5
362
Normal
-0.5
136
Normal
-0.5
823
Tumor
-0.5
1027
Tumor
-0.5
361
Tumor
-0.5
376
Normal
-0.6
967
Tumor
-0.6
375
Tumor
-0.6
383
Tumor
-0.6
111
Normal
-0.6
138
Normal
-0.6
114
Normal
-0.6
146
Normal
-0.6
124
Normal
-0.6
128
Normal
-0.7
132
Normal
-0.7
126
Normal
-0.8
145
Tumor
-0.8
862
Normal
-0.8
367
Tumor
-0.9
573
Tumor
-0.9
366
Normal
-1.0
368
Normal
-1.0
351
Tumor
N/A
231
Tumor
N/A
352
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
344
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
