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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUCLG1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
101.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
396.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
380.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
286.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
278.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
263.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
263.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
258.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
245.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
228.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
216.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
214.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
208.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
205.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
196.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
190.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
189.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
181.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
179.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
178.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
177.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
175.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
175.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
174.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
172.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
172.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
171.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
170.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
159.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
157.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
156.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
156.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
155.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
152.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
152.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
150.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
149.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
149.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
149.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
148.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
147.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
146.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
146.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
146.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
142.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
141.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
141.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
140.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
140.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
140.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
139.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
139.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
138.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
138.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
138.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
138.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
137.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
137.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
136.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
136.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
135.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
135.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
135.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
134.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
133.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
133.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
133.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
131.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
131.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
130.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
130.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
129.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
126.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
126.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
126.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
126.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
124.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
124.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
124.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
124.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
122.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
122.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
122.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
122.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
121.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
121.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
120.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
119.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
118.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
117.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
117.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
117.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
117.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
115.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
114.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
114.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
113.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
113.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
113.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
113.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
112.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
112.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
112.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
111.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
111.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
110.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
110.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
110.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
109.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
109.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
109.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
109.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
109.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
108.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
108.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
108.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
107.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
107.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
107.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
106.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
106.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
106.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
105.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
105.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
104.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
104.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
104.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
104.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
104.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
103.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
103.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
102.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
102.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
102.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
101.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
101.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
101.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
101.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
100.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
100.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
100.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
100.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
100.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
100.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
99.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
99.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
99.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
98.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
98.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
98.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
98.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
97.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
97.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
96.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
96.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
96.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
96.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
95.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
95.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
95.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
95.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
95.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
95.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
94.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
94.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
94.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
94.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
94.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
93.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
93.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
93.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
93.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
92.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
91.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
91.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
91.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
90.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
90.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
90.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
90.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
90.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
90.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
90.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
90.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
89.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
89.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
89.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
89.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
89.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
88.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
88.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
87.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
87.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
87.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
87.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
87.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
86.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
85.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
85.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
85.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
85.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
85.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
85.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
84.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
84.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
84.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
84.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
84.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
84.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
84.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
84.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
83.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
83.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
83.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
83.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
82.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
82.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
82.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
82.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
81.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
81.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
81.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
81.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
81.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
80.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
80.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
80.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
80.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
80.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
80.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
80.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
79.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
79.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
79.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
78.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
77.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
77.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
77.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
77.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
77.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
77.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
76.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
76.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
76.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
76.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
76.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
76.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
76.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
76.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
75.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
75.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
75.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
75.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
74.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
73.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
73.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
73.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
73.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
73.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
73.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
72.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
72.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
72.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
71.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
71.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
70.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
70.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
70.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
70.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
70.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
70.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
70.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
70.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
69.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
69.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
69.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
69.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
69.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
69.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
68.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
68.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
68.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
68.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
67.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
67.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
67.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
66.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
66.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
65.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
65.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
65.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
65.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
65.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
64.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
64.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
64.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
64.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
63.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
63.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
63.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
63.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
62.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
62.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
61.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
61.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
60.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
60.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
60.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
60.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
60.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
60.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
59.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
59.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
58.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
58.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
58.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
58.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
58.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
58.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
58.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
58.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
57.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
57.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
57.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
56.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
56.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
56.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
54.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
54.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
52.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
51.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
50.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
49.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
48.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
48.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
45.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
45.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
42.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
41.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
38.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
35.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
34.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
33.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SUCLG1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
78.7
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
273.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
232.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
228.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
193.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
186.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
182.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
165.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
163.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
149.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
144.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
140.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
139.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
138.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
138.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
138.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
138.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
134.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
133.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
132.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
123.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
123.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
122.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
121.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
120.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
119.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
118.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
118.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
117.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
117.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
117.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
112.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
111.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
110.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
110.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
108.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
108.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
108.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
107.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
106.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
104.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
104.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
102.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
102.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
101.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
101.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
101.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
101.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
98.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
98.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
97.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
96.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
96.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
96.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
96.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
95.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
94.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
94.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
94.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
93.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
92.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
91.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
91.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
90.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
90.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
90.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
89.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
89.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
88.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
88.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
88.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
87.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
87.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
87.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
86.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
86.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
84.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
83.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
83.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
82.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
82.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
82.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
82.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
82.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
82.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
81.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
81.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
81.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
81.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
81.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
80.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
80.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
80.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
79.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
78.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
77.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
77.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
77.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
76.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
76.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
76.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
76.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
75.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
75.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
75.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
75.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
75.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
75.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
74.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
74.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
74.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
74.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
74.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
73.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
73.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
72.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
71.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
71.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
71.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
70.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
69.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
69.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
67.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
67.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
66.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
66.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
66.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
66.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
66.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
66.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
65.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
65.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
65.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
65.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
64.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
63.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
63.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
63.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
63.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
62.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
61.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
61.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
61.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
61.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
60.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
60.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
59.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
59.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
57.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
56.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
56.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
56.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
55.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
54.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
54.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
54.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
53.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
53.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
53.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
53.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
53.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
52.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
52.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
50.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
50.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
50.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
50.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
48.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
48.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
48.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
48.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
47.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
47.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
46.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
45.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
45.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
44.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
44.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
42.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
41.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
41.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
40.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
40.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
39.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
38.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
37.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
37.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
37.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
35.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
33.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
465
Tumor
0.9
925
Tumor
0.8
452
Normal
0.7
636
Normal
0.7
227
Tumor
0.6
513
Tumor
0.6
618
Normal
0.6
571
Tumor
0.6
564
Normal
0.6
648
Normal
0.6
786
Normal
0.6
1043
Tumor
0.6
414
Normal
0.6
462
Normal
0.6
563
Tumor
0.5
436
Normal
0.5
745
Tumor
0.5
428
Normal
0.5
756
Normal
0.5
1045
Tumor
0.5
615
Tumor
0.5
466
Normal
0.5
713
Tumor
0.5
128
Normal
0.5
746
Normal
0.5
824
Normal
0.5
742
Normal
0.5
664
Normal
0.5
864
Normal
0.5
818
Normal
0.5
172
Normal
0.5
448
Normal
0.5
426
Normal
0.5
924
Normal
0.5
862
Normal
0.4
464
Normal
0.4
232
Normal
0.4
568
Normal
0.4
873
Tumor
0.4
698
Normal
0.4
866
Normal
0.4
394
Normal
0.4
423
Tumor
0.4
162
Normal
0.4
666
Normal
0.4
874
Normal
0.4
695
Tumor
0.4
882
Normal
0.4
954
Normal
0.4
358
Normal
0.4
868
Normal
0.4
314
Normal
0.4
534
Normal
0.4
546
Normal
0.4
145
Tumor
0.4
662
Normal
0.4
278
Normal
0.4
342
Normal
0.4
858
Normal
0.4
914
Normal
0.3
468
Normal
0.3
515
Tumor
0.3
186
Normal
0.3
528
Normal
0.3
816
Normal
0.3
298
Normal
0.3
356
Normal
0.3
388
Normal
0.3
628
Normal
0.3
424
Normal
0.3
422
Normal
0.3
432
Normal
0.3
642
Normal
0.3
744
Normal
0.3
944
Normal
0.3
723
Tumor
0.3
332
Normal
0.3
196
Normal
0.3
922
Normal
0.3
738
Normal
0.3
132
Normal
0.3
446
Normal
0.3
722
Normal
0.3
912
Normal
0.3
616
Normal
0.3
1026
Normal
0.3
456
Normal
0.3
982
Normal
0.3
938
Normal
0.3
392
Normal
0.3
412
Normal
0.3
127
Tumor
0.3
376
Normal
0.3
1022
Normal
0.3
286
Normal
0.3
258
Normal
0.3
222
Normal
0.3
344
Normal
0.3
365
Tumor
0.3
361
Tumor
0.3
518
Normal
0.3
955
Tumor
0.2
714
Normal
0.2
362
Normal
0.2
672
Normal
0.2
214
Normal
0.2
884
Normal
0.2
354
Normal
0.2
366
Normal
0.2
852
Normal
0.2
228
Normal
0.2
137
Tumor
0.2
964
Normal
0.2
111
Normal
0.2
488
Normal
0.2
357
Tumor
0.2
484
Normal
0.2
416
Normal
0.2
328
Normal
0.2
396
Normal
0.2
393
Tumor
0.2
878
Normal
0.2
956
Normal
0.2
1032
Normal
0.2
284
Normal
0.2
926
Normal
0.2
574
Normal
0.2
1044
Normal
0.2
728
Normal
0.2
114
Normal
0.2
138
Normal
0.2
1046
Normal
0.2
1016
Normal
0.2
218
Normal
0.2
262
Normal
0.2
352
Normal
0.2
148
Normal
0.2
558
Normal
0.1
142
Normal
0.1
976
Normal
0.1
494
Normal
0.1
716
Normal
0.1
472
Normal
0.1
686
Normal
0.1
461
Tumor
0.1
778
Normal
0.1
696
Normal
0.1
224
Normal
0.1
554
Normal
0.1
188
Normal
0.1
516
Normal
0.1
538
Normal
0.1
966
Normal
0.1
918
Normal
0.1
572
Normal
0.1
212
Normal
0.1
1028
Normal
0.1
435
Tumor
0.1
526
Normal
0.1
952
Normal
0.1
272
Normal
0.1
487
Tumor
0.1
968
Normal
0.0
474
Normal
0.0
1014
Normal
0.0
483
Tumor
0.0
126
Normal
0.0
953
Tumor
0.0
567
Tumor
0.0
514
Normal
0.0
1042
Normal
0.0
267
Tumor
0.0
364
Normal
0.0
146
Normal
0.0
482
Normal
0.0
386
Normal
0.0
384
Normal
0.0
161
Tumor
0.0
136
Normal
0.0
867
Tumor
0.0
958
Normal
0.0
978
Normal
0.0
741
Tumor
0.0
257
Tumor
0.0
368
Normal
0.0
984
Normal
0.0
823
Tumor
0.0
981
Tumor
-0.1
813
Tumor
-0.1
434
Normal
-0.1
916
Normal
-0.1
113
Tumor
-0.1
124
Normal
-0.1
883
Tumor
-0.1
268
Normal
-0.1
857
Tumor
-0.1
327
Tumor
-0.1
312
Normal
-0.1
721
Tumor
-0.1
421
Tumor
-0.1
617
Tumor
-0.1
141
Tumor
-0.1
363
Tumor
-0.1
191
Tumor
-0.1
492
Normal
-0.1
915
Tumor
-0.1
135
Tumor
-0.1
443
Tumor
-0.1
557
Tumor
-0.2
431
Tumor
-0.2
444
Normal
-0.2
451
Tumor
-0.2
635
Tumor
-0.2
777
Tumor
-0.2
863
Tumor
-0.2
1027
Tumor
-0.2
481
Tumor
-0.2
785
Tumor
-0.3
192
Normal
-0.3
1041
Tumor
-0.3
477
Tumor
-0.3
445
Tumor
-0.3
313
Tumor
-0.3
478
Normal
-0.3
231
Tumor
-0.3
641
Tumor
-0.3
261
Tumor
-0.3
195
Tumor
-0.3
814
Normal
-0.3
911
Tumor
-0.3
517
Tumor
-0.3
743
Tumor
-0.3
685
Tumor
-0.3
524
Normal
-0.3
112
Tumor
-0.4
498
Normal
-0.4
217
Tumor
-0.4
536
Normal
-0.4
967
Tumor
-0.4
415
Tumor
-0.4
937
Tumor
-0.4
427
Tumor
-0.4
297
Tumor
-0.4
957
Tumor
-0.4
1025
Tumor
-0.4
1013
Tumor
-0.4
425
Tumor
-0.4
185
Tumor
-0.4
221
Tumor
-0.4
697
Tumor
-0.4
463
Tumor
-0.4
433
Tumor
-0.4
537
Tumor
-0.5
727
Tumor
-0.5
367
Tumor
-0.5
491
Tumor
-0.5
1015
Tumor
-0.5
353
Tumor
-0.5
525
Tumor
-0.5
851
Tumor
-0.5
523
Tumor
-0.5
815
Tumor
-0.5
187
Tumor
-0.5
553
Tumor
-0.5
383
Tumor
-0.5
387
Tumor
-0.5
663
Tumor
-0.5
467
Tumor
-0.6
975
Tumor
-0.6
341
Tumor
-0.6
411
Tumor
-0.6
715
Tumor
-0.6
963
Tumor
-0.6
171
Tumor
-0.6
447
Tumor
-0.6
647
Tumor
-0.6
533
Tumor
-0.6
923
Tumor
-0.7
921
Tumor
-0.7
271
Tumor
-0.7
861
Tumor
-0.7
455
Tumor
-0.7
1031
Tumor
-0.7
881
Tumor
-0.7
671
Tumor
-0.7
355
Tumor
-0.7
493
Tumor
-0.7
527
Tumor
-0.7
413
Tumor
-0.7
391
Tumor
-0.7
471
Tumor
-0.8
943
Tumor
-0.8
131
Tumor
-0.8
665
Tumor
-0.8
877
Tumor
-0.8
123
Tumor
-0.8
277
Tumor
-0.8
213
Tumor
-0.8
737
Tumor
-0.8
147
Tumor
-0.8
473
Tumor
-0.8
125
Tumor
-0.9
223
Tumor
-0.9
913
Tumor
-0.9
865
Tumor
-0.9
983
Tumor
-0.9
375
Tumor
-0.9
951
Tumor
-0.9
385
Tumor
-0.9
977
Tumor
-0.9
573
Tumor
-1.0
1021
Tumor
-1.0
724
Normal
-1.0
917
Tumor
-1.0
343
Tumor
-1.0
395
Tumor
-1.0
351
Tumor
-1.1
331
Tumor
-1.1
817
Tumor
-1.1
965
Tumor
-1.1
497
Tumor
-1.1
535
Tumor
-1.2
311
Tumor
-1.2
285
Tumor
-1.3
211
Tumor
-1.3
545
Tumor
-1.3
755
Tumor
-1.4
283
Tumor
-1.5
661
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.