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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFBR2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
62.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
58.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
52.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
49.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
49.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
49.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
45.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
45.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
35.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
35.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
34.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
34.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
33.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
33.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
32.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
32.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
31.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
30.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
28.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
28.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
27.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
25.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
25.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
24.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
23.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
23.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
23.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
23.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
22.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
22.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
21.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
18.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
17.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
17.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
17.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
14.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
14.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
14.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TGFBR2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.1
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
76.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
72.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
65.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
59.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
58.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
58.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
58.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
53.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
51.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
50.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
49.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
45.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
43.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
43.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
42.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
41.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
40.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
39.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
38.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
38.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
37.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
36.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
36.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
36.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
36.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
35.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
34.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
33.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
32.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
31.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
30.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
30.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
30.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
29.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
29.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
28.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
28.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
28.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
27.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
27.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
27.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
23.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
21.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
21.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
20.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
20.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
20.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.0
385
Tumor
1.0
351
Tumor
1.0
343
Tumor
0.8
131
Tumor
0.8
954
Normal
0.7
192
Normal
0.7
344
Normal
0.6
353
Tumor
0.6
498
Normal
0.6
376
Normal
0.5
716
Normal
0.5
513
Tumor
0.5
536
Normal
0.5
471
Tumor
0.5
524
Normal
0.5
224
Normal
0.5
358
Normal
0.5
852
Normal
0.5
917
Tumor
0.5
352
Normal
0.5
188
Normal
0.4
975
Tumor
0.4
958
Normal
0.4
715
Tumor
0.4
342
Normal
0.4
968
Normal
0.4
1041
Tumor
0.4
1025
Tumor
0.4
686
Normal
0.4
261
Tumor
0.4
984
Normal
0.4
1031
Tumor
0.4
914
Normal
0.4
976
Normal
0.4
162
Normal
0.4
981
Tumor
0.4
341
Tumor
0.4
816
Normal
0.4
721
Tumor
0.4
384
Normal
0.4
744
Normal
0.4
672
Normal
0.4
696
Normal
0.3
516
Normal
0.3
187
Tumor
0.3
864
Normal
0.3
1014
Normal
0.3
661
Tumor
0.3
425
Tumor
0.3
444
Normal
0.3
944
Normal
0.3
1044
Normal
0.3
938
Normal
0.3
866
Normal
0.3
926
Normal
0.3
354
Normal
0.3
636
Normal
0.3
368
Normal
0.3
956
Normal
0.3
815
Tumor
0.3
963
Tumor
0.3
111
Normal
0.3
228
Normal
0.3
218
Normal
0.3
627
Tumor
0.3
918
Normal
0.3
232
Normal
0.3
492
Normal
0.3
983
Tumor
0.3
1032
Normal
0.3
227
Tumor
0.3
526
Normal
0.3
882
Normal
0.3
285
Tumor
0.3
126
Normal
0.3
915
Tumor
0.3
217
Tumor
0.3
148
Normal
0.3
196
Normal
0.2
818
Normal
0.2
722
Normal
0.2
823
Tumor
0.2
514
Normal
0.2
922
Normal
0.2
223
Tumor
0.2
916
Normal
0.2
491
Tumor
0.2
1015
Tumor
0.2
221
Tumor
0.2
862
Normal
0.2
286
Normal
0.2
1046
Normal
0.2
824
Normal
0.2
952
Normal
0.2
1043
Tumor
0.2
977
Tumor
0.2
615
Tumor
0.2
284
Normal
0.2
713
Tumor
0.2
447
Tumor
0.2
434
Normal
0.2
365
Tumor
0.2
858
Normal
0.2
112
Tumor
0.2
142
Normal
0.2
778
Normal
0.2
124
Normal
0.2
386
Normal
0.2
727
Tumor
0.2
448
Normal
0.2
415
Tumor
0.2
814
Normal
0.2
572
Normal
0.2
982
Normal
0.2
817
Tumor
0.2
432
Normal
0.2
362
Normal
0.2
573
Tumor
0.2
964
Normal
0.2
477
Tumor
0.2
978
Normal
0.2
114
Normal
0.2
557
Tumor
0.2
186
Normal
0.2
878
Normal
0.2
1042
Normal
0.2
965
Tumor
0.2
937
Tumor
0.2
488
Normal
0.2
392
Normal
0.2
966
Normal
0.2
172
Normal
0.2
857
Tumor
0.2
874
Normal
0.2
268
Normal
0.2
383
Tumor
0.2
1028
Normal
0.1
146
Normal
0.1
913
Tumor
0.1
642
Normal
0.1
366
Normal
0.1
666
Normal
0.1
185
Tumor
0.1
742
Normal
0.1
616
Normal
0.1
662
Normal
0.1
517
Tumor
0.1
231
Tumor
0.1
494
Normal
0.1
262
Normal
0.1
482
Normal
0.1
518
Normal
0.1
698
Normal
0.1
648
Normal
0.1
641
Tumor
0.1
1045
Tumor
0.1
272
Normal
0.1
912
Normal
0.1
446
Normal
0.1
258
Normal
0.1
861
Tumor
0.1
1026
Normal
0.1
414
Normal
0.1
1016
Normal
0.1
314
Normal
0.1
671
Tumor
0.1
396
Normal
0.1
391
Tumor
0.1
481
Tumor
0.1
535
Tumor
0.1
128
Normal
0.1
884
Normal
0.1
723
Tumor
0.1
423
Tumor
0.1
695
Tumor
0.1
212
Normal
0.1
424
Normal
0.1
756
Normal
0.1
955
Tumor
0.1
473
Tumor
0.1
213
Tumor
0.1
714
Normal
0.1
868
Normal
0.1
786
Normal
0.1
138
Normal
0.1
618
Normal
0.1
664
Normal
0.1
214
Normal
0.1
724
Normal
0.1
422
Normal
0.1
483
Tumor
0.0
628
Normal
0.0
534
Normal
0.0
421
Tumor
0.0
332
Normal
0.0
745
Tumor
0.0
394
Normal
0.0
428
Normal
0.0
574
Normal
0.0
311
Tumor
0.0
478
Normal
0.0
222
Normal
0.0
426
Normal
0.0
538
Normal
0.0
568
Normal
0.0
312
Normal
0.0
685
Tumor
0.0
462
Normal
0.0
943
Tumor
0.0
863
Tumor
0.0
867
Tumor
0.0
528
Normal
0.0
546
Normal
0.0
331
Tumor
0.0
877
Tumor
0.0
364
Normal
0.0
433
Tumor
0.0
484
Normal
0.0
1022
Normal
0.0
472
Normal
0.0
127
Tumor
0.0
195
Tumor
0.0
147
Tumor
0.0
558
Normal
0.0
271
Tumor
0.0
924
Normal
0.0
923
Tumor
0.0
493
Tumor
0.0
145
Tumor
0.0
461
Tumor
-0.1
327
Tumor
-0.1
436
Normal
-0.1
785
Tumor
-0.1
361
Tumor
-0.1
851
Tumor
-0.1
191
Tumor
-0.1
743
Tumor
-0.1
278
Normal
-0.1
356
Normal
-0.1
474
Normal
-0.1
113
Tumor
-0.1
873
Tumor
-0.1
136
Normal
-0.1
137
Tumor
-0.1
563
Tumor
-0.1
554
Normal
-0.1
388
Normal
-0.1
881
Tumor
-0.1
416
Normal
-0.1
141
Tumor
-0.1
746
Normal
-0.1
171
Tumor
-0.1
738
Normal
-0.1
617
Tumor
-0.1
967
Tumor
-0.1
921
Tumor
-0.1
357
Tumor
-0.1
545
Tumor
-0.1
412
Normal
-0.1
363
Tumor
-0.1
553
Tumor
-0.1
298
Normal
-0.1
395
Tumor
-0.2
728
Normal
-0.2
865
Tumor
-0.2
132
Normal
-0.2
367
Tumor
-0.2
911
Tumor
-0.2
161
Tumor
-0.2
328
Normal
-0.2
951
Tumor
-0.2
283
Tumor
-0.2
564
Normal
-0.2
277
Tumor
-0.2
755
Tumor
-0.2
777
Tumor
-0.3
355
Tumor
-0.3
125
Tumor
-0.3
925
Tumor
-0.3
297
Tumor
-0.3
257
Tumor
-0.3
741
Tumor
-0.3
515
Tumor
-0.3
647
Tumor
-0.3
665
Tumor
-0.3
1013
Tumor
-0.3
525
Tumor
-0.3
567
Tumor
-0.3
431
Tumor
-0.3
571
Tumor
-0.3
813
Tumor
-0.4
387
Tumor
-0.4
393
Tumor
-0.4
445
Tumor
-0.4
953
Tumor
-0.4
883
Tumor
-0.4
1027
Tumor
-0.4
375
Tumor
-0.4
211
Tumor
-0.4
435
Tumor
-0.4
537
Tumor
-0.5
313
Tumor
-0.5
123
Tumor
-0.5
533
Tumor
-0.5
1021
Tumor
-0.5
411
Tumor
-0.5
737
Tumor
-0.5
135
Tumor
-0.5
443
Tumor
-0.5
663
Tumor
-0.5
487
Tumor
-0.5
697
Tumor
-0.5
427
Tumor
-0.6
267
Tumor
-0.6
957
Tumor
-0.6
523
Tumor
-0.6
497
Tumor
-0.7
635
Tumor
-0.7
527
Tumor
-0.8
451
Tumor
N/A
452
Normal
N/A
455
Tumor
N/A
456
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.