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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLDN1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
92.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
454.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
430.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
344.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
337.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
326.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
310.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
294.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
290.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
287.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
286.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
280.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
270.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
263.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
251.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
243.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
239.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
229.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
225.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
221.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
208.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
206.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
204.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
196.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
195.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
194.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
193.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
189.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
189.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
187.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
187.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
186.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
185.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
183.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
182.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
181.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
181.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
180.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
179.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
179.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
177.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
176.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
175.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
174.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
174.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
174.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
173.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
173.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
172.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
172.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
170.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
170.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
170.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
168.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
167.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
164.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
161.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
159.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
159.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
156.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
153.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
153.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
152.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
151.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
151.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
150.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
149.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
149.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
148.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
147.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
146.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
144.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
143.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
138.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
136.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
136.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
135.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
135.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
133.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
127.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
126.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
126.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
126.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
124.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
122.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
121.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
121.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
121.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
121.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
121.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
121.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
118.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
118.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
118.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
117.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
117.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
117.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
117.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
116.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
116.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
116.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
116.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
115.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
115.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
114.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
113.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
112.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
111.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
111.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
111.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
109.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
109.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
109.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
109.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
108.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
107.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
107.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
106.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
105.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
104.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
103.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
102.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
102.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
102.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
102.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
98.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
98.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
97.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
96.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
95.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
95.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
95.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
95.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
95.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
94.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
93.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
92.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
92.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
91.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
90.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
90.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
87.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
87.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
86.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
86.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
86.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
86.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
84.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
83.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
83.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
82.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
81.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
81.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
81.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
81.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
81.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
80.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
80.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
79.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
79.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
78.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
78.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
78.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
76.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
76.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
76.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
75.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
75.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
75.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
75.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
74.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
74.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
73.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
73.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
73.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
73.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
72.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
72.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
72.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
71.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
71.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
70.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
70.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
70.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
69.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
69.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
69.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
69.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
69.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
68.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
68.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
67.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
67.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
66.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
66.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
66.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
65.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
65.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
64.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
64.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
63.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
63.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
63.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
63.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
62.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
62.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
60.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
60.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
59.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
59.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
59.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
59.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
59.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
58.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
57.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
56.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
56.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
55.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
55.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
55.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
55.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
55.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
54.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
54.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
54.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
53.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
53.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
52.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
52.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
52.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
52.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
52.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
51.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
51.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
50.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
50.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
49.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
49.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
49.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
48.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
47.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
47.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
47.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
47.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
45.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
45.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
45.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
45.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
44.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
43.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
43.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
43.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
43.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
43.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
43.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
43.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
43.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
42.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
41.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
40.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
39.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
39.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
36.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
36.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
36.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
35.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
34.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
34.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
32.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
31.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
29.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
28.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
25.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
24.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
21.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
21.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
20.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CLDN1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
116.8
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
407.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
387.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
381.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
376.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
367.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
329.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
324.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
304.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
304.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
297.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
286.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
272.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
269.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
263.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
258.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
257.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
252.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
250.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
246.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
233.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
228.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
226.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
225.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
224.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
222.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
218.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
217.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
215.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
212.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
209.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
203.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
201.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
199.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
194.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
194.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
193.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
184.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
180.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
178.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
177.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
177.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
173.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
171.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
170.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
167.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
166.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
165.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
165.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
164.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
161.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
159.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
153.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
152.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
150.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
147.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
146.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
146.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
143.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
141.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
139.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
138.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
135.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
134.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
134.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
133.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
133.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
132.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
131.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
131.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
131.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
130.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
129.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
127.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
127.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
125.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
124.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
124.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
124.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
123.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
122.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
122.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
120.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
120.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
120.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
118.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
118.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
118.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
116.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
115.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
112.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
112.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
112.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
111.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
110.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
109.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
109.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
109.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
109.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
108.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
108.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
108.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
107.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
107.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
107.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
105.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
105.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
104.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
104.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
104.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
103.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
103.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
103.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
103.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
102.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
102.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
100.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
99.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
99.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
99.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
98.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
97.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
95.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
95.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
93.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
93.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
93.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
93.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
92.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
92.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
91.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
89.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
88.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
86.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
86.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
85.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
84.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
83.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
83.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
83.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
83.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
81.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
80.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
79.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
79.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
79.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
79.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
79.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
78.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
78.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
77.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
77.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
76.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
75.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
75.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
74.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
74.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
74.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
74.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
73.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
73.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
72.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
72.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
71.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
71.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
70.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
70.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
69.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
69.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
68.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
68.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
65.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
65.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
63.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
62.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
62.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
61.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
61.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
60.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
59.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
59.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
59.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
58.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
58.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
57.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
56.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
56.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
56.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
55.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
55.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
53.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
52.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
52.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
51.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
51.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
50.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
50.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
50.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
45.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
41.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
39.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
38.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
37.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
34.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
33.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
31.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
26.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
26.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
22.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
21.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
413
Tumor
1.6
743
Tumor
1.5
131
Tumor
1.4
921
Tumor
1.4
271
Tumor
1.3
471
Tumor
1.0
1031
Tumor
0.9
297
Tumor
0.8
975
Tumor
0.8
425
Tumor
0.8
967
Tumor
0.8
877
Tumor
0.7
1025
Tumor
0.7
221
Tumor
0.7
367
Tumor
0.7
641
Tumor
0.6
883
Tumor
0.6
363
Tumor
0.6
817
Tumor
0.5
331
Tumor
0.5
517
Tumor
0.5
881
Tumor
0.5
223
Tumor
0.5
737
Tumor
0.5
545
Tumor
0.5
964
Normal
0.5
983
Tumor
0.4
523
Tumor
0.3
695
Tumor
0.3
227
Tumor
0.3
135
Tumor
0.3
937
Tumor
0.3
636
Normal
0.3
535
Tumor
0.2
618
Normal
0.2
956
Normal
0.2
878
Normal
0.2
628
Normal
0.2
113
Tumor
0.2
963
Tumor
0.2
424
Normal
0.2
443
Tumor
0.2
642
Normal
0.1
463
Tumor
0.1
914
Normal
0.1
982
Normal
0.1
414
Normal
0.1
461
Tumor
0.1
112
Tumor
0.1
616
Normal
0.1
553
Tumor
0.1
756
Normal
0.1
422
Normal
0.1
493
Tumor
0.1
1043
Tumor
0.1
464
Normal
0.1
262
Normal
0.1
187
Tumor
0.1
617
Tumor
0.1
445
Tumor
0.1
192
Normal
0.1
746
Normal
0.1
456
Normal
0.1
128
Normal
0.1
435
Tumor
0.1
563
Tumor
0.1
217
Tumor
0.1
744
Normal
0.1
742
Normal
0.1
111
Normal
0.0
713
Tumor
0.0
416
Normal
0.0
462
Normal
0.0
955
Tumor
0.0
777
Tumor
0.0
968
Normal
0.0
196
Normal
0.0
277
Tumor
0.0
627
Tumor
0.0
923
Tumor
0.0
428
Normal
0.0
472
Normal
0.0
778
Normal
0.0
136
Normal
0.0
267
Tumor
0.0
212
Normal
0.0
738
Normal
0.0
447
Tumor
0.0
185
Tumor
0.0
477
Tumor
0.0
285
Tumor
0.0
137
Tumor
0.0
976
Normal
0.0
412
Normal
0.0
615
Tumor
0.0
951
Tumor
0.0
917
Tumor
0.0
448
Normal
0.0
1028
Normal
0.0
474
Normal
0.0
671
Tumor
0.0
1021
Tumor
0.0
426
Normal
0.0
874
Normal
0.0
977
Tumor
0.0
698
Normal
0.0
385
Tumor
0.0
786
Normal
0.0
958
Normal
0.0
214
Normal
0.0
912
Normal
0.0
944
Normal
-0.1
785
Tumor
-0.1
911
Tumor
-0.1
423
Tumor
-0.1
538
Normal
-0.1
537
Tumor
-0.1
393
Tumor
-0.1
755
Tumor
-0.1
298
Normal
-0.1
222
Normal
-0.1
312
Normal
-0.1
952
Normal
-0.1
195
Tumor
-0.1
572
Normal
-0.1
343
Tumor
-0.1
162
Normal
-0.1
863
Tumor
-0.1
873
Tumor
-0.1
132
Normal
-0.1
564
Normal
-0.1
228
Normal
-0.1
492
Normal
-0.1
142
Normal
-0.1
1014
Normal
-0.1
814
Normal
-0.1
394
Normal
-0.1
954
Normal
-0.1
482
Normal
-0.1
1026
Normal
-0.1
466
Normal
-0.1
867
Tumor
-0.1
468
Normal
-0.1
534
Normal
-0.1
518
Normal
-0.1
715
Tumor
-0.1
924
Normal
-0.1
272
Normal
-0.1
465
Tumor
-0.1
436
Normal
-0.1
387
Tumor
-0.1
966
Normal
-0.1
714
Normal
-0.1
124
Normal
-0.1
114
Normal
-0.1
568
Normal
-0.1
278
Normal
-0.1
728
Normal
-0.1
286
Normal
-0.2
685
Tumor
-0.2
148
Normal
-0.2
884
Normal
-0.2
528
Normal
-0.2
224
Normal
-0.2
851
Tumor
-0.2
571
Tumor
-0.2
727
Tumor
-0.2
268
Normal
-0.2
926
Normal
-0.2
172
Normal
-0.2
232
Normal
-0.2
965
Tumor
-0.2
664
Normal
-0.2
1042
Normal
-0.2
328
Normal
-0.2
882
Normal
-0.2
357
Tumor
-0.2
432
Normal
-0.2
1046
Normal
-0.2
364
Normal
-0.2
525
Tumor
-0.2
857
Tumor
-0.2
546
Normal
-0.2
452
Normal
-0.2
284
Normal
-0.2
816
Normal
-0.2
558
Normal
-0.2
696
Normal
-0.2
723
Tumor
-0.2
497
Tumor
-0.2
866
Normal
-0.2
356
Normal
-0.2
662
Normal
-0.2
1022
Normal
-0.2
918
Normal
-0.2
922
Normal
-0.2
1016
Normal
-0.2
161
Tumor
-0.2
314
Normal
-0.2
483
Tumor
-0.2
218
Normal
-0.2
467
Tumor
-0.2
191
Tumor
-0.2
376
Normal
-0.2
925
Tumor
-0.2
938
Normal
-0.3
916
Normal
-0.3
431
Tumor
-0.3
342
Normal
-0.3
362
Normal
-0.3
415
Tumor
-0.3
421
Tumor
-0.3
332
Normal
-0.3
188
Normal
-0.3
126
Normal
-0.3
686
Normal
-0.3
574
Normal
-0.3
984
Normal
-0.3
478
Normal
-0.3
913
Tumor
-0.3
386
Normal
-0.3
484
Normal
-0.3
127
Tumor
-0.3
186
Normal
-0.3
213
Tumor
-0.3
355
Tumor
-0.3
145
Tumor
-0.3
716
Normal
-0.3
865
Tumor
-0.3
813
Tumor
-0.3
864
Normal
-0.3
515
Tumor
-0.3
392
Normal
-0.3
146
Normal
-0.3
455
Tumor
-0.3
488
Normal
-0.3
258
Normal
-0.3
396
Normal
-0.3
533
Tumor
-0.3
391
Tumor
-0.3
411
Tumor
-0.3
366
Normal
-0.3
513
Tumor
-0.3
494
Normal
-0.3
481
Tumor
-0.3
823
Tumor
-0.4
824
Normal
-0.4
516
Normal
-0.4
852
Normal
-0.4
526
Normal
-0.4
261
Tumor
-0.4
231
Tumor
-0.4
147
Tumor
-0.4
498
Normal
-0.4
648
Normal
-0.4
978
Normal
-0.4
672
Normal
-0.4
1013
Tumor
-0.4
943
Tumor
-0.4
358
Normal
-0.4
868
Normal
-0.4
858
Normal
-0.4
327
Tumor
-0.4
138
Normal
-0.4
514
Normal
-0.4
1032
Normal
-0.4
384
Normal
-0.4
141
Tumor
-0.4
663
Tumor
-0.4
344
Normal
-0.4
433
Tumor
-0.5
1044
Normal
-0.5
353
Tumor
-0.5
527
Tumor
-0.5
171
Tumor
-0.5
473
Tumor
-0.5
524
Normal
-0.5
915
Tumor
-0.5
554
Normal
-0.5
388
Normal
-0.5
444
Normal
-0.5
446
Normal
-0.5
311
Tumor
-0.5
665
Tumor
-0.5
697
Tumor
-0.5
487
Tumor
-0.5
862
Normal
-0.5
365
Tumor
-0.5
1045
Tumor
-0.5
341
Tumor
-0.5
815
Tumor
-0.5
557
Tumor
-0.6
368
Normal
-0.6
361
Tumor
-0.6
741
Tumor
-0.6
395
Tumor
-0.6
722
Normal
-0.6
666
Normal
-0.6
351
Tumor
-0.6
257
Tumor
-0.6
123
Tumor
-0.6
434
Normal
-0.6
352
Normal
-0.7
635
Tumor
-0.7
745
Tumor
-0.7
1041
Tumor
-0.7
427
Tumor
-0.7
1015
Tumor
-0.7
491
Tumor
-0.8
721
Tumor
-0.8
536
Normal
-0.8
354
Normal
-0.8
957
Tumor
-0.8
567
Tumor
-0.8
861
Tumor
-0.8
647
Tumor
-0.8
125
Tumor
-0.8
1027
Tumor
-0.8
383
Tumor
-0.8
313
Tumor
-0.8
981
Tumor
-0.9
573
Tumor
-0.9
818
Normal
-0.9
451
Tumor
-0.9
953
Tumor
-0.9
661
Tumor
-1.0
375
Tumor
-1.0
283
Tumor
-1.2
724
Normal
-1.3
211
Tumor
-1.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.