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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FZD5 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
33.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
32.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
27.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
24.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
24.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
18.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
13.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
9.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FZD5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
94.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
31.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
26.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
18.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
2.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
2.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
135
Tumor
1.1
557
Tumor
0.9
342
Normal
0.9
527
Tumor
0.8
661
Tumor
0.8
358
Normal
0.7
572
Normal
0.6
528
Normal
0.6
642
Normal
0.6
618
Normal
0.6
413
Tumor
0.6
628
Normal
0.5
284
Normal
0.5
286
Normal
0.5
332
Normal
0.5
534
Normal
0.5
568
Normal
0.5
376
Normal
0.5
354
Normal
0.5
124
Normal
0.5
666
Normal
0.5
278
Normal
0.5
232
Normal
0.5
383
Tumor
0.5
662
Normal
0.5
132
Normal
0.5
435
Tumor
0.5
195
Tumor
0.5
258
Normal
0.5
297
Tumor
0.5
224
Normal
0.5
452
Normal
0.4
873
Tumor
0.4
615
Tumor
0.4
862
Normal
0.4
462
Normal
0.4
554
Normal
0.4
142
Normal
0.4
636
Normal
0.4
564
Normal
0.4
616
Normal
0.4
228
Normal
0.4
868
Normal
0.4
218
Normal
0.4
818
Normal
0.4
468
Normal
0.4
314
Normal
0.4
445
Tumor
0.4
136
Normal
0.4
363
Tumor
0.4
937
Tumor
0.4
217
Tumor
0.4
574
Normal
0.4
138
Normal
0.4
861
Tumor
0.4
298
Normal
0.4
866
Normal
0.4
627
Tumor
0.4
884
Normal
0.4
368
Normal
0.4
824
Normal
0.4
148
Normal
0.4
1046
Normal
0.4
664
Normal
0.4
882
Normal
0.4
463
Tumor
0.4
456
Normal
0.4
262
Normal
0.4
514
Normal
0.4
955
Tumor
0.4
944
Normal
0.4
696
Normal
0.4
864
Normal
0.4
196
Normal
0.4
364
Normal
0.4
966
Normal
0.3
222
Normal
0.3
914
Normal
0.3
145
Tumor
0.3
114
Normal
0.3
312
Normal
0.3
558
Normal
0.3
384
Normal
0.3
546
Normal
0.3
146
Normal
0.3
938
Normal
0.3
723
Tumor
0.3
648
Normal
0.3
722
Normal
0.3
524
Normal
0.3
422
Normal
0.3
344
Normal
0.3
816
Normal
0.3
366
Normal
0.3
878
Normal
0.3
982
Normal
0.3
698
Normal
0.3
212
Normal
0.3
267
Tumor
0.3
352
Normal
0.3
617
Tumor
0.3
211
Tumor
0.3
426
Normal
0.3
188
Normal
0.3
464
Normal
0.3
1044
Normal
0.3
954
Normal
0.3
482
Normal
0.3
128
Normal
0.3
738
Normal
0.3
365
Tumor
0.3
272
Normal
0.3
448
Normal
0.2
851
Tumor
0.2
361
Tumor
0.2
573
Tumor
0.2
424
Normal
0.2
533
Tumor
0.2
111
Normal
0.2
518
Normal
0.2
865
Tumor
0.2
472
Normal
0.2
746
Normal
0.2
964
Normal
0.2
858
Normal
0.2
466
Normal
0.2
968
Normal
0.2
187
Tumor
0.2
328
Normal
0.2
912
Normal
0.2
716
Normal
0.2
362
Normal
0.2
672
Normal
0.2
425
Tumor
0.2
126
Normal
0.2
724
Normal
0.2
874
Normal
0.2
141
Tumor
0.2
428
Normal
0.2
186
Normal
0.2
412
Normal
0.2
714
Normal
0.2
268
Normal
0.2
635
Tumor
0.2
742
Normal
0.2
526
Normal
0.2
223
Tumor
0.2
353
Tumor
0.2
414
Normal
0.2
343
Tumor
0.2
728
Normal
0.2
857
Tumor
0.1
213
Tumor
0.1
455
Tumor
0.1
1016
Normal
0.1
977
Tumor
0.1
411
Tumor
0.1
976
Normal
0.1
446
Normal
0.1
686
Normal
0.1
737
Tumor
0.1
535
Tumor
0.1
271
Tumor
0.1
283
Tumor
0.1
815
Tumor
0.1
663
Tumor
0.1
367
Tumor
0.1
563
Tumor
0.1
113
Tumor
0.1
715
Tumor
0.1
952
Normal
0.1
356
Normal
0.1
474
Normal
0.1
1025
Tumor
0.1
1027
Tumor
0.1
137
Tumor
0.1
863
Tumor
0.1
416
Normal
0.1
852
Normal
0.1
1014
Normal
0.1
983
Tumor
0.1
432
Normal
0.1
911
Tumor
0.1
956
Normal
0.0
423
Tumor
0.0
978
Normal
0.0
924
Normal
0.0
695
Tumor
0.0
436
Normal
0.0
451
Tumor
0.0
867
Tumor
0.0
481
Tumor
0.0
231
Tumor
0.0
447
Tumor
0.0
375
Tumor
0.0
697
Tumor
0.0
311
Tumor
0.0
922
Normal
0.0
926
Normal
0.0
162
Normal
0.0
641
Tumor
0.0
553
Tumor
0.0
545
Tumor
0.0
214
Normal
0.0
538
Normal
0.0
125
Tumor
0.0
727
Tumor
0.0
172
Normal
0.0
915
Tumor
0.0
331
Tumor
0.0
467
Tumor
0.0
1015
Tumor
0.0
415
Tumor
0.0
313
Tumor
0.0
1043
Tumor
0.0
685
Tumor
0.0
981
Tumor
0.0
478
Normal
0.0
744
Normal
0.0
925
Tumor
-0.1
357
Tumor
-0.1
984
Normal
-0.1
916
Normal
-0.1
523
Tumor
-0.1
537
Tumor
-0.1
958
Normal
-0.1
461
Tumor
-0.1
444
Normal
-0.1
477
Tumor
-0.1
327
Tumor
-0.1
917
Tumor
-0.1
192
Normal
-0.1
191
Tumor
-0.1
341
Tumor
-0.1
1026
Normal
-0.1
513
Tumor
-0.1
421
Tumor
-0.1
285
Tumor
-0.1
434
Normal
-0.1
257
Tumor
-0.1
227
Tumor
-0.1
277
Tumor
-0.1
1042
Normal
-0.1
918
Normal
-0.1
171
Tumor
-0.1
536
Normal
-0.1
975
Tumor
-0.1
1028
Normal
-0.2
355
Tumor
-0.2
515
Tumor
-0.2
484
Normal
-0.2
443
Tumor
-0.2
261
Tumor
-0.2
433
Tumor
-0.2
877
Tumor
-0.2
823
Tumor
-0.2
431
Tumor
-0.2
741
Tumor
-0.2
123
Tumor
-0.2
778
Normal
-0.2
127
Tumor
-0.2
494
Normal
-0.2
161
Tumor
-0.2
427
Tumor
-0.2
665
Tumor
-0.2
721
Tumor
-0.2
488
Normal
-0.3
881
Tumor
-0.3
567
Tumor
-0.3
745
Tumor
-0.3
1022
Normal
-0.3
943
Tumor
-0.3
221
Tumor
-0.3
813
Tumor
-0.3
1013
Tumor
-0.3
1045
Tumor
-0.3
516
Normal
-0.3
913
Tumor
-0.3
185
Tumor
-0.4
951
Tumor
-0.4
957
Tumor
-0.4
571
Tumor
-0.4
1021
Tumor
-0.4
497
Tumor
-0.4
487
Tumor
-0.4
525
Tumor
-0.4
817
Tumor
-0.4
498
Normal
-0.4
1032
Normal
-0.5
1041
Tumor
-0.5
743
Tumor
-0.5
963
Tumor
-0.5
953
Tumor
-0.5
351
Tumor
-0.5
147
Tumor
-0.5
713
Tumor
-0.5
647
Tumor
-0.5
883
Tumor
-0.6
755
Tumor
-0.6
473
Tumor
-0.6
131
Tumor
-0.6
785
Tumor
-0.6
786
Normal
-0.6
671
Tumor
-0.7
471
Tumor
-0.7
465
Tumor
-0.7
967
Tumor
-0.7
493
Tumor
-0.7
492
Normal
-0.7
965
Tumor
-0.8
923
Tumor
-0.8
814
Normal
-0.9
491
Tumor
-0.9
756
Normal
-0.9
112
Tumor
-1.0
1031
Tumor
-1.0
517
Tumor
-1.0
483
Tumor
-1.3
777
Tumor
-1.4
921
Tumor
-1.7
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
388
Normal
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
