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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF149 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
42.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
39.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
32.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
31.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
27.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
26.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
26.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
25.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
25.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
24.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
22.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
22.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
17.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
16.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
15.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
15.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
9.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
9.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF149 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
47.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
42.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
34.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
32.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
31.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
30.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
30.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
30.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
30.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
29.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
27.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
27.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
27.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
26.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
25.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
25.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
23.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
22.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
22.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
22.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
21.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
20.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
19.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
18.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
18.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
17.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
17.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
13.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
13.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
385
Tumor
1.8
343
Tumor
1.4
223
Tumor
1.1
573
Tumor
1.1
471
Tumor
1.0
641
Tumor
1.0
951
Tumor
1.0
413
Tumor
0.9
493
Tumor
0.9
331
Tumor
0.9
314
Normal
0.9
863
Tumor
0.8
983
Tumor
0.7
298
Normal
0.7
615
Tumor
0.7
743
Tumor
0.7
671
Tumor
0.7
817
Tumor
0.7
877
Tumor
0.5
278
Normal
0.5
1025
Tumor
0.5
213
Tumor
0.5
727
Tumor
0.5
517
Tumor
0.5
851
Tumor
0.5
967
Tumor
0.5
342
Normal
0.5
285
Tumor
0.5
467
Tumor
0.4
533
Tumor
0.4
917
Tumor
0.4
553
Tumor
0.4
864
Normal
0.4
862
Normal
0.4
861
Tumor
0.4
483
Tumor
0.4
661
Tumor
0.4
393
Tumor
0.3
545
Tumor
0.3
1015
Tumor
0.3
221
Tumor
0.3
353
Tumor
0.3
395
Tumor
0.3
537
Tumor
0.3
524
Normal
0.3
332
Normal
0.3
387
Tumor
0.3
187
Tumor
0.3
312
Normal
0.3
525
Tumor
0.2
391
Tumor
0.2
975
Tumor
0.2
367
Tumor
0.2
363
Tumor
0.2
283
Tumor
0.2
217
Tumor
0.2
358
Normal
0.2
874
Normal
0.2
513
Tumor
0.2
965
Tumor
0.2
715
Tumor
0.2
224
Normal
0.2
868
Normal
0.2
232
Normal
0.2
627
Tumor
0.2
617
Tumor
0.2
635
Tumor
0.2
514
Normal
0.2
518
Normal
0.2
815
Tumor
0.2
755
Tumor
0.2
1031
Tumor
0.2
1021
Tumor
0.2
515
Tumor
0.2
697
Tumor
0.2
724
Normal
0.1
272
Normal
0.1
262
Normal
0.1
191
Tumor
0.1
943
Tumor
0.1
823
Tumor
0.1
865
Tumor
0.1
745
Tumor
0.1
978
Normal
0.1
388
Normal
0.1
392
Normal
0.1
352
Normal
0.1
858
Normal
0.1
354
Normal
0.1
171
Tumor
0.1
628
Normal
0.1
857
Tumor
0.1
866
Normal
0.1
713
Tumor
0.1
271
Tumor
0.1
955
Tumor
0.1
147
Tumor
0.0
491
Tumor
0.0
396
Normal
0.0
492
Normal
0.0
937
Tumor
0.0
443
Tumor
0.0
425
Tumor
0.0
873
Tumor
0.0
131
Tumor
0.0
386
Normal
0.0
818
Normal
0.0
824
Normal
0.0
883
Tumor
0.0
816
Normal
0.0
258
Normal
0.0
433
Tumor
0.0
311
Tumor
0.0
568
Normal
0.0
867
Tumor
0.0
195
Tumor
0.0
186
Normal
0.0
963
Tumor
0.0
361
Tumor
0.0
464
Normal
0.0
125
Tumor
0.0
456
Normal
0.0
564
Normal
0.0
185
Tumor
0.0
435
Tumor
0.0
284
Normal
0.0
785
Tumor
0.0
953
Tumor
0.0
466
Normal
0.0
344
Normal
0.0
188
Normal
0.0
737
Tumor
0.0
477
Tumor
-0.1
918
Normal
-0.1
527
Tumor
-0.1
145
Tumor
-0.1
494
Normal
-0.1
135
Tumor
-0.1
452
Normal
-0.1
138
Normal
-0.1
964
Normal
-0.1
428
Normal
-0.1
922
Normal
-0.1
394
Normal
-0.1
463
Tumor
-0.1
957
Tumor
-0.1
422
Normal
-0.1
636
Normal
-0.1
1013
Tumor
-0.1
852
Normal
-0.1
211
Tumor
-0.1
146
Normal
-0.1
516
Normal
-0.1
915
Tumor
-0.1
136
Normal
-0.1
618
Normal
-0.1
227
Tumor
-0.1
966
Normal
-0.1
523
Tumor
-0.1
572
Normal
-0.1
365
Tumor
-0.1
455
Tumor
-0.1
482
Normal
-0.1
938
Normal
-0.1
1014
Normal
-0.2
162
Normal
-0.2
944
Normal
-0.2
881
Tumor
-0.2
956
Normal
-0.2
976
Normal
-0.2
571
Tumor
-0.2
384
Normal
-0.2
977
Tumor
-0.2
424
Normal
-0.2
642
Normal
-0.2
926
Normal
-0.2
414
Normal
-0.2
376
Normal
-0.2
913
Tumor
-0.2
916
Normal
-0.2
212
Normal
-0.2
368
Normal
-0.2
777
Tumor
-0.2
558
Normal
-0.2
616
Normal
-0.2
968
Normal
-0.2
468
Normal
-0.2
451
Tumor
-0.2
557
Tumor
-0.2
574
Normal
-0.2
1016
Normal
-0.2
448
Normal
-0.2
415
Tumor
-0.2
478
Normal
-0.2
286
Normal
-0.2
112
Tumor
-0.2
313
Tumor
-0.2
526
Normal
-0.2
778
Normal
-0.2
925
Tumor
-0.2
1043
Tumor
-0.2
914
Normal
-0.2
297
Tumor
-0.2
416
Normal
-0.2
498
Normal
-0.3
375
Tumor
-0.3
746
Normal
-0.3
567
Tumor
-0.3
341
Tumor
-0.3
1044
Normal
-0.3
722
Normal
-0.3
665
Tumor
-0.3
434
Normal
-0.3
228
Normal
-0.3
461
Tumor
-0.3
952
Normal
-0.3
481
Tumor
-0.3
738
Normal
-0.3
958
Normal
-0.3
423
Tumor
-0.3
696
Normal
-0.3
984
Normal
-0.3
444
Normal
-0.3
721
Tumor
-0.3
686
Normal
-0.3
488
Normal
-0.3
742
Normal
-0.3
535
Tumor
-0.3
663
Tumor
-0.3
716
Normal
-0.3
426
Normal
-0.3
421
Tumor
-0.3
268
Normal
-0.3
172
Normal
-0.3
954
Normal
-0.3
1045
Tumor
-0.3
357
Tumor
-0.3
714
Normal
-0.3
141
Tumor
-0.3
366
Normal
-0.3
364
Normal
-0.3
924
Normal
-0.3
142
Normal
-0.3
685
Tumor
-0.3
356
Normal
-0.3
982
Normal
-0.3
786
Normal
-0.3
728
Normal
-0.4
741
Tumor
-0.4
432
Normal
-0.4
137
Tumor
-0.4
267
Tumor
-0.4
666
Normal
-0.4
672
Normal
-0.4
446
Normal
-0.4
431
Tumor
-0.4
536
Normal
-0.4
465
Tumor
-0.4
923
Tumor
-0.4
744
Normal
-0.4
126
Normal
-0.4
161
Tumor
-0.4
351
Tumor
-0.4
132
Normal
-0.4
1046
Normal
-0.4
695
Tumor
-0.4
484
Normal
-0.4
474
Normal
-0.4
427
Tumor
-0.4
472
Normal
-0.4
528
Normal
-0.4
124
Normal
-0.4
148
Normal
-0.4
1028
Normal
-0.4
1041
Tumor
-0.4
534
Normal
-0.4
327
Tumor
-0.4
362
Normal
-0.4
563
Tumor
-0.5
412
Normal
-0.5
473
Tumor
-0.5
128
Normal
-0.5
884
Normal
-0.5
1026
Normal
-0.5
411
Tumor
-0.5
127
Tumor
-0.5
664
Normal
-0.5
554
Normal
-0.5
328
Normal
-0.5
497
Tumor
-0.5
1042
Normal
-0.5
447
Tumor
-0.5
355
Tumor
-0.5
445
Tumor
-0.5
261
Tumor
-0.5
756
Normal
-0.5
113
Tumor
-0.5
662
Normal
-0.5
648
Normal
-0.5
383
Tumor
-0.5
882
Normal
-0.5
196
Normal
-0.5
538
Normal
-0.5
277
Tumor
-0.5
214
Normal
-0.6
436
Normal
-0.6
257
Tumor
-0.6
218
Normal
-0.6
912
Normal
-0.6
546
Normal
-0.6
698
Normal
-0.6
462
Normal
-0.6
921
Tumor
-0.6
222
Normal
-0.6
647
Tumor
-0.6
1032
Normal
-0.6
1022
Normal
-0.6
231
Tumor
-0.7
878
Normal
-0.7
192
Normal
-0.7
723
Tumor
-0.7
981
Tumor
-0.7
813
Tumor
-0.7
114
Normal
-0.7
111
Normal
-0.7
814
Normal
-0.8
123
Tumor
-0.8
911
Tumor
-0.9
1027
Tumor
-1.0
487
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
