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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPRD2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
31.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
21.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
19.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPRD2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
11.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
10.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
9.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
5.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
5.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
4.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
431
Tumor
1.3
743
Tumor
1.3
131
Tumor
1.3
977
Tumor
1.2
695
Tumor
1.2
877
Tumor
1.1
161
Tumor
1.1
211
Tumor
1.0
425
Tumor
1.0
1021
Tumor
0.9
881
Tumor
0.9
951
Tumor
0.9
277
Tumor
0.9
411
Tumor
0.9
921
Tumor
0.8
523
Tumor
0.8
1031
Tumor
0.8
497
Tumor
0.8
1013
Tumor
0.8
533
Tumor
0.8
487
Tumor
0.8
545
Tumor
0.7
123
Tumor
0.7
355
Tumor
0.7
517
Tumor
0.7
271
Tumor
0.7
737
Tumor
0.6
567
Tumor
0.6
975
Tumor
0.6
477
Tumor
0.6
777
Tumor
0.6
525
Tumor
0.6
923
Tumor
0.6
331
Tumor
0.6
865
Tumor
0.5
1025
Tumor
0.5
641
Tumor
0.5
813
Tumor
0.5
965
Tumor
0.5
471
Tumor
0.5
427
Tumor
0.5
357
Tumor
0.5
663
Tumor
0.5
883
Tumor
0.5
553
Tumor
0.5
715
Tumor
0.5
221
Tumor
0.5
385
Tumor
0.4
957
Tumor
0.4
983
Tumor
0.4
537
Tumor
0.4
817
Tumor
0.4
515
Tumor
0.4
867
Tumor
0.4
953
Tumor
0.4
823
Tumor
0.4
171
Tumor
0.4
443
Tumor
0.3
483
Tumor
0.3
445
Tumor
0.3
383
Tumor
0.3
285
Tumor
0.3
727
Tumor
0.3
147
Tumor
0.3
473
Tumor
0.3
413
Tumor
0.3
393
Tumor
0.3
915
Tumor
0.3
435
Tumor
0.3
313
Tumor
0.3
213
Tumor
0.3
493
Tumor
0.3
1041
Tumor
0.3
447
Tumor
0.3
661
Tumor
0.2
351
Tumor
0.2
724
Normal
0.2
814
Normal
0.2
721
Tumor
0.2
527
Tumor
0.2
1043
Tumor
0.2
741
Tumor
0.2
665
Tumor
0.2
963
Tumor
0.2
297
Tumor
0.2
571
Tumor
0.2
697
Tumor
0.2
451
Tumor
0.2
463
Tumor
0.2
467
Tumor
0.2
135
Tumor
0.2
461
Tumor
0.1
415
Tumor
0.1
557
Tumor
0.1
785
Tumor
0.1
573
Tumor
0.1
481
Tumor
0.1
873
Tumor
0.1
327
Tumor
0.1
713
Tumor
0.1
112
Tumor
0.1
491
Tumor
0.1
943
Tumor
0.1
857
Tumor
0.1
635
Tumor
0.1
375
Tumor
0.1
125
Tumor
0.1
913
Tumor
0.1
967
Tumor
0.0
227
Tumor
0.0
231
Tumor
0.0
283
Tumor
0.0
113
Tumor
0.0
647
Tumor
0.0
671
Tumor
0.0
917
Tumor
0.0
563
Tumor
0.0
433
Tumor
0.0
912
Normal
0.0
911
Tumor
0.0
361
Tumor
0.0
714
Normal
0.0
267
Tumor
0.0
465
Tumor
0.0
685
Tumor
0.0
187
Tumor
-0.1
217
Tumor
-0.1
478
Normal
-0.1
185
Tumor
-0.1
191
Tumor
-0.1
863
Tumor
-0.1
1027
Tumor
-0.1
815
Tumor
-0.1
1032
Normal
-0.1
387
Tumor
-0.1
861
Tumor
-0.1
672
Normal
-0.1
937
Tumor
-0.1
1022
Normal
-0.1
141
Tumor
-0.1
698
Normal
-0.1
924
Normal
-0.1
716
Normal
-0.1
984
Normal
-0.1
311
Tumor
-0.1
524
Normal
-0.1
1042
Normal
-0.1
744
Normal
-0.1
484
Normal
-0.1
884
Normal
-0.1
572
Normal
-0.1
498
Normal
-0.1
192
Normal
-0.1
554
Normal
-0.1
534
Normal
-0.1
964
Normal
-0.1
455
Tumor
-0.1
851
Tumor
-0.1
916
Normal
-0.1
1028
Normal
-0.1
954
Normal
-0.2
926
Normal
-0.2
878
Normal
-0.2
966
Normal
-0.2
538
Normal
-0.2
918
Normal
-0.2
482
Normal
-0.2
137
Tumor
-0.2
1014
Normal
-0.2
488
Normal
-0.2
922
Normal
-0.2
696
Normal
-0.2
145
Tumor
-0.2
723
Tumor
-0.2
786
Normal
-0.2
513
Tumor
-0.2
384
Normal
-0.2
686
Normal
-0.2
286
Normal
-0.2
858
Normal
-0.2
462
Normal
-0.2
395
Tumor
-0.2
574
Normal
-0.2
1026
Normal
-0.2
958
Normal
-0.2
472
Normal
-0.2
546
Normal
-0.2
261
Tumor
-0.2
412
Normal
-0.2
391
Tumor
-0.2
518
Normal
-0.2
944
Normal
-0.2
564
Normal
-0.2
432
Normal
-0.2
778
Normal
-0.2
722
Normal
-0.2
882
Normal
-0.2
615
Tumor
-0.2
756
Normal
-0.2
968
Normal
-0.2
818
Normal
-0.2
516
Normal
-0.2
526
Normal
-0.2
423
Tumor
-0.2
955
Tumor
-0.2
228
Normal
-0.2
356
Normal
-0.2
738
Normal
-0.2
558
Normal
-0.2
257
Tumor
-0.2
448
Normal
-0.2
224
Normal
-0.2
568
Normal
-0.2
617
Tumor
-0.2
742
Normal
-0.2
284
Normal
-0.2
492
Normal
-0.2
628
Normal
-0.2
636
Normal
-0.2
1016
Normal
-0.3
1044
Normal
-0.3
978
Normal
-0.3
914
Normal
-0.3
446
Normal
-0.3
494
Normal
-0.3
648
Normal
-0.3
982
Normal
-0.3
474
Normal
-0.3
416
Normal
-0.3
528
Normal
-0.3
514
Normal
-0.3
376
Normal
-0.3
142
Normal
-0.3
952
Normal
-0.3
466
Normal
-0.3
444
Normal
-0.3
536
Normal
-0.3
1046
Normal
-0.3
268
Normal
-0.3
456
Normal
-0.3
824
Normal
-0.3
981
Tumor
-0.3
938
Normal
-0.3
1015
Tumor
-0.3
976
Normal
-0.3
195
Tumor
-0.3
662
Normal
-0.3
343
Tumor
-0.3
353
Tumor
-0.3
367
Tumor
-0.3
868
Normal
-0.3
222
Normal
-0.3
464
Normal
-0.3
745
Tumor
-0.3
363
Tumor
-0.3
434
Normal
-0.3
436
Normal
-0.3
298
Normal
-0.3
148
Normal
-0.3
364
Normal
-0.3
728
Normal
-0.3
138
Normal
-0.3
664
Normal
-0.3
212
Normal
-0.3
127
Tumor
-0.3
866
Normal
-0.3
426
Normal
-0.3
535
Tumor
-0.3
218
Normal
-0.3
616
Normal
-0.3
128
Normal
-0.3
666
Normal
-0.3
328
Normal
-0.3
341
Tumor
-0.3
365
Tumor
-0.3
642
Normal
-0.3
956
Normal
-0.3
368
Normal
-0.3
852
Normal
-0.3
925
Tumor
-0.4
223
Tumor
-0.4
146
Normal
-0.4
126
Normal
-0.4
366
Normal
-0.4
162
Normal
-0.4
214
Normal
-0.4
312
Normal
-0.4
1045
Tumor
-0.4
468
Normal
-0.4
862
Normal
-0.4
396
Normal
-0.4
188
Normal
-0.4
874
Normal
-0.4
452
Normal
-0.4
332
Normal
-0.4
196
Normal
-0.4
864
Normal
-0.4
618
Normal
-0.4
114
Normal
-0.4
362
Normal
-0.4
352
Normal
-0.4
627
Tumor
-0.4
278
Normal
-0.4
386
Normal
-0.4
421
Tumor
-0.4
232
Normal
-0.4
816
Normal
-0.4
132
Normal
-0.4
172
Normal
-0.4
392
Normal
-0.4
746
Normal
-0.4
111
Normal
-0.4
124
Normal
-0.4
414
Normal
-0.4
755
Tumor
-0.5
428
Normal
-0.5
258
Normal
-0.5
186
Normal
-0.5
354
Normal
-0.5
424
Normal
-0.5
262
Normal
-0.5
422
Normal
-0.5
136
Normal
-0.5
344
Normal
-0.5
388
Normal
-0.5
314
Normal
-0.5
272
Normal
-0.5
342
Normal
-0.5
394
Normal
-0.5
358
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
