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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
91.6
nTPM
HPA Brain:
293.8
nTPM
GTEx:
91.6
nTPM
FANTOM5:
6.7
Scaled Tags Per Million
Pig:
592.0
nTPM
Mouse:
697.2
nTPM
Allen mouse:
2.8
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
293.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 114.1
2219
Male, age 76, both hemispheres
176.3
2019
Male, age 18, unknown
170.5
1827
Male, age 72, unknown
157.1
2411
Female, age 72, unknown
127.2
2828
Female, age 72, unknown
116.2
1833
Male, age 53, unknown
97.5
1830
Male, age 51, unknown
97.4
1870
Female, age 42, unknown
92.5
2666
Male, age 74, left hemisphere
60.4
2586
Male, age 75, left hemisphere
45.8
Dorsal raphe nucleus nTPM: 129.7
2047
Male, age 72, unknown
197.9
2750
Male, age 76, both hemispheres
162.8
2298
Female, age 72, unknown
133.6
1828
Male, age 53, unknown
83.8
2016
Female, age 72, unknown
70.5
Inferior colliculus nTPM: 136.6
1848
Female, age 42, unknown
174.3
2849
Male, age 72, unknown
142.6
2097
Female, age 72, unknown
135.8
1890
Male, age 53, unknown
93.5
Median raphe nucleus nTPM: 293.8
2220
Male, age 76, midline
293.8
Periaquaductal grey, anterior nTPM: 159.8
2502
Female, age 75, unknown
244.9
1947
Male, age 18, unknown
121.4
1795
Male, age 51, unknown
113.0
Periaquaductal grey, dorsal nTPM: 107.3
1840
Male, age 53, unknown
130.9
2464
Female, age 72, unknown
122.1
2850
Male, age 76, both hemispheres
109.1
1831
Male, age 72, unknown
66.9
Periaquaductal grey, lateral nTPM: 90.9
2140
Male, age 76, both hemispheres
96.2
2272
Male, age 74, both hemispheres
94.0
2053
Male, age 18, unknown
82.4
Pretectal area nTPM: 161.9
1816
Male, age 51, unknown
234.7
1944
Female, age 72, unknown
232.5
2007
Male, age 72, unknown
229.8
1817
Female, age 42, unknown
217.4
1815
Male, age 53, unknown
188.8
2667
Female, age 75, unknown
170.1
2316
Male, age 76, right hemisphere
134.2
2825
Male, age 18, unknown
99.3
2273
Male, age 74, both hemispheres
93.9
2224
Female, age 72, unknown
91.4
2407
Male, age 75, both hemispheres
88.7
Red nucleus nTPM: 127.1
1821
Female, age 72, unknown
184.4
2785
Male, age 18, unknown
167.7
1954
Female, age 42, unknown
151.9
2588
Male, age 74, left hemisphere
137.6
1865
Male, age 51, unknown
125.3
2823
Male, age 76, right hemisphere
120.0
2503
Female, age 72, unknown
114.9
1904
Male, age 53, unknown
112.8
2227
Male, age 72, unknown
112.7
2769
Male, age 72, unknown
111.3
2584
Male, age 75, left hemisphere
108.3
2725
Female, age 75, unknown
77.9
Substantia nigra nTPM: 130.1
2665
Male, age 74, both hemispheres
291.0
1941
Male, age 53, unknown
235.6
1889
Female, age 72, unknown
168.6
1851
Male, age 51, unknown
105.6
2409
Female, age 72, unknown
101.0
1916
Female, age 42, unknown
93.1
2699
Male, age 18, unknown
89.4
2590
Female, age 75, unknown
83.6
2241
Male, age 72, unknown
71.7
2583
Male, age 75, right hemisphere
60.9
Superior colliculus nTPM: 134.7
1895
Male, age 76, right hemisphere
225.7
2087
Female, age 72, unknown
173.2
1796
Male, age 53, unknown
166.1
2261
Male, age 18, unknown
151.9
2668
Female, age 75, unknown
148.3
1839
Male, age 51, unknown
141.1
1913
Female, age 42, unknown
99.3
1995
Male, age 72, unknown
95.5
2664
Male, age 75, both hemispheres
77.0
2587
Male, age 74, left hemisphere
68.4
Ventral tegmental area nTPM: 131.5
2218
Male, age 76, both hemispheres
224.0
2410
Female, age 72, unknown
152.4
2223
Female, age 72, unknown
125.1
1942
Male, age 51, unknown
108.8
1915
Female, age 42, unknown
108.4
2021
Male, age 53, unknown
70.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
91.6
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 91.6
Samples: 139
Max nTPM: 951.2
Min nTPM: 2.7
Std nTPM: 128.3
Median nTPM: 43.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
951.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
721.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
540.8
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
473.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
366.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
335.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
316.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
263.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
254.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
250.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
241.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
234.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
225.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
217.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
203.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
202.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
189.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
187.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
181.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
170.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
164.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
161.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
153.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
146.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
139.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
128.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
122.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
121.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
120.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
118.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
116.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
115.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
113.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
112.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
112.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
110.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
108.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
104.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
104.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
98.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
98.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
97.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
96.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
95.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
94.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
94.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
94.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
92.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
90.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
89.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
88.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
85.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
85.0
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
83.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
81.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
81.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
78.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
76.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
75.7
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
75.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
73.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
72.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
71.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
66.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
63.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
63.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
63.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
58.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
55.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
43.8
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
42.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
42.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
41.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
40.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
40.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
39.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
38.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
37.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
37.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
36.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
34.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
33.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
33.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
33.0
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
32.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
29.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
29.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
28.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
27.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
26.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
25.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
22.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
22.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
21.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
21.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
20.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
20.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
19.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
19.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
19.1
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
19.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
18.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
17.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
16.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
15.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
14.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
14.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
13.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
13.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
13.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
12.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
12.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
12.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
12.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
11.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
10.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
10.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
10.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
10.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
10.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
9.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
6.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
6.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
6.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
3.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
3.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
3.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
2.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
2.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
697.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 697.2
Samples: 4
Max nTPM: 723.2
Min nTPM: 667.3
Sample A
Male
667.3
Sample B
Male
722.5
Sample C
Female
723.2
Sample D
Female
675.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.