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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL5A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
21.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARL5A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
16.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
15.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
13.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
271
Tumor
0.8
351
Tumor
0.8
1025
Tumor
0.8
211
Tumor
0.7
131
Tumor
0.7
877
Tumor
0.6
921
Tumor
0.6
471
Tumor
0.6
123
Tumor
0.6
221
Tumor
0.6
285
Tumor
0.6
385
Tumor
0.5
473
Tumor
0.5
145
Tumor
0.5
724
Normal
0.5
443
Tumor
0.5
395
Tumor
0.5
815
Tumor
0.5
557
Tumor
0.5
1021
Tumor
0.4
553
Tumor
0.4
545
Tumor
0.4
661
Tumor
0.4
1027
Tumor
0.4
635
Tumor
0.4
257
Tumor
0.4
261
Tumor
0.4
1031
Tumor
0.4
527
Tumor
0.4
367
Tumor
0.4
873
Tumor
0.4
487
Tumor
0.3
813
Tumor
0.3
383
Tumor
0.3
1043
Tumor
0.3
171
Tumor
0.3
911
Tumor
0.3
567
Tumor
0.3
857
Tumor
0.3
493
Tumor
0.3
421
Tumor
0.3
361
Tumor
0.3
341
Tumor
0.3
641
Tumor
0.3
967
Tumor
0.3
213
Tumor
0.3
125
Tumor
0.3
135
Tumor
0.2
355
Tumor
0.2
881
Tumor
0.2
435
Tumor
0.2
331
Tumor
0.2
861
Tumor
0.2
963
Tumor
0.2
427
Tumor
0.2
915
Tumor
0.2
913
Tumor
0.2
615
Tumor
0.2
343
Tumor
0.2
823
Tumor
0.2
483
Tumor
0.2
713
Tumor
0.2
147
Tumor
0.2
431
Tumor
0.2
937
Tumor
0.2
127
Tumor
0.2
283
Tumor
0.2
187
Tumor
0.2
537
Tumor
0.2
697
Tumor
0.2
195
Tumor
0.2
368
Normal
0.2
867
Tumor
0.2
191
Tumor
0.2
124
Normal
0.1
376
Normal
0.1
671
Tumor
0.1
727
Tumor
0.1
384
Normal
0.1
447
Tumor
0.1
785
Tumor
0.1
925
Tumor
0.1
715
Tumor
0.1
393
Tumor
0.1
425
Tumor
0.1
665
Tumor
0.1
523
Tumor
0.1
433
Tumor
0.1
481
Tumor
0.1
923
Tumor
0.1
497
Tumor
0.1
695
Tumor
0.1
737
Tumor
0.1
865
Tumor
0.1
983
Tumor
0.1
477
Tumor
0.1
366
Normal
0.1
231
Tumor
0.1
851
Tumor
0.1
741
Tumor
0.1
357
Tumor
0.1
297
Tumor
0.1
951
Tumor
0.1
965
Tumor
0.1
647
Tumor
0.1
1015
Tumor
0.1
968
Normal
0.1
286
Normal
0.0
494
Normal
0.0
353
Tumor
0.0
745
Tumor
0.0
883
Tumor
0.0
814
Normal
0.0
964
Normal
0.0
217
Tumor
0.0
517
Tumor
0.0
375
Tumor
0.0
513
Tumor
0.0
114
Normal
0.0
491
Tumor
0.0
975
Tumor
0.0
966
Normal
0.0
146
Normal
0.0
627
Tumor
0.0
327
Tumor
0.0
113
Tumor
0.0
914
Normal
0.0
917
Tumor
0.0
558
Normal
0.0
161
Tumor
0.0
698
Normal
0.0
455
Tumor
0.0
952
Normal
0.0
816
Normal
0.0
363
Tumor
0.0
451
Tumor
0.0
492
Normal
0.0
212
Normal
0.0
824
Normal
0.0
448
Normal
0.0
362
Normal
0.0
142
Normal
0.0
413
Tumor
0.0
953
Tumor
0.0
298
Normal
0.0
272
Normal
0.0
436
Normal
0.0
137
Tumor
0.0
533
Tumor
0.0
484
Normal
0.0
721
Tumor
0.0
617
Tumor
0.0
463
Tumor
0.0
868
Normal
0.0
128
Normal
0.0
141
Tumor
0.0
387
Tumor
0.0
224
Normal
0.0
564
Normal
0.0
863
Tumor
0.0
515
Tumor
0.0
262
Normal
0.0
862
Normal
0.0
267
Tumor
0.0
228
Normal
0.0
132
Normal
0.0
955
Tumor
0.0
434
Normal
-0.1
342
Normal
-0.1
922
Normal
-0.1
858
Normal
-0.1
488
Normal
-0.1
332
Normal
-0.1
1013
Tumor
-0.1
185
Tumor
-0.1
817
Tumor
-0.1
728
Normal
-0.1
461
Tumor
-0.1
464
Normal
-0.1
311
Tumor
-0.1
482
Normal
-0.1
277
Tumor
-0.1
618
Normal
-0.1
636
Normal
-0.1
864
Normal
-0.1
111
Normal
-0.1
365
Tumor
-0.1
568
Normal
-0.1
223
Tumor
-0.1
916
Normal
-0.1
696
Normal
-0.1
136
Normal
-0.1
573
Tumor
-0.1
352
Normal
-0.1
1041
Tumor
-0.1
526
Normal
-0.1
571
Tumor
-0.1
1016
Normal
-0.1
878
Normal
-0.1
982
Normal
-0.1
874
Normal
-0.1
465
Tumor
-0.1
685
Tumor
-0.1
1026
Normal
-0.1
954
Normal
-0.1
926
Normal
-0.1
358
Normal
-0.1
924
Normal
-0.1
742
Normal
-0.1
572
Normal
-0.1
958
Normal
-0.1
498
Normal
-0.1
755
Tumor
-0.1
462
Normal
-0.1
391
Tumor
-0.1
214
Normal
-0.1
472
Normal
-0.1
514
Normal
-0.1
222
Normal
-0.1
777
Tumor
-0.1
956
Normal
-0.1
852
Normal
-0.1
227
Tumor
-0.1
138
Normal
-0.2
616
Normal
-0.2
518
Normal
-0.2
882
Normal
-0.2
218
Normal
-0.2
554
Normal
-0.2
126
Normal
-0.2
445
Tumor
-0.2
723
Tumor
-0.2
686
Normal
-0.2
196
Normal
-0.2
818
Normal
-0.2
412
Normal
-0.2
354
Normal
-0.2
628
Normal
-0.2
314
Normal
-0.2
563
Tumor
-0.2
666
Normal
-0.2
112
Tumor
-0.2
981
Tumor
-0.2
722
Normal
-0.2
1022
Normal
-0.2
525
Tumor
-0.2
943
Tumor
-0.2
778
Normal
-0.2
866
Normal
-0.2
411
Tumor
-0.2
356
Normal
-0.2
978
Normal
-0.2
1045
Tumor
-0.2
534
Normal
-0.2
188
Normal
-0.2
884
Normal
-0.2
944
Normal
-0.2
738
Normal
-0.2
714
Normal
-0.2
474
Normal
-0.2
456
Normal
-0.2
392
Normal
-0.2
1028
Normal
-0.2
662
Normal
-0.2
172
Normal
-0.2
364
Normal
-0.2
1032
Normal
-0.2
1042
Normal
-0.2
422
Normal
-0.2
648
Normal
-0.2
528
Normal
-0.2
918
Normal
-0.2
1046
Normal
-0.2
957
Tumor
-0.2
977
Tumor
-0.2
344
Normal
-0.2
415
Tumor
-0.2
746
Normal
-0.2
388
Normal
-0.2
1014
Normal
-0.2
284
Normal
-0.2
664
Normal
-0.2
716
Normal
-0.2
468
Normal
-0.3
744
Normal
-0.3
912
Normal
-0.3
394
Normal
-0.3
546
Normal
-0.3
574
Normal
-0.3
192
Normal
-0.3
984
Normal
-0.3
386
Normal
-0.3
756
Normal
-0.3
642
Normal
-0.3
538
Normal
-0.3
663
Tumor
-0.3
938
Normal
-0.3
672
Normal
-0.3
536
Normal
-0.3
478
Normal
-0.3
976
Normal
-0.3
1044
Normal
-0.3
162
Normal
-0.3
786
Normal
-0.3
328
Normal
-0.3
416
Normal
-0.3
232
Normal
-0.3
148
Normal
-0.3
432
Normal
-0.3
258
Normal
-0.3
268
Normal
-0.3
312
Normal
-0.3
278
Normal
-0.3
466
Normal
-0.3
313
Tumor
-0.3
516
Normal
-0.3
446
Normal
-0.3
452
Normal
-0.4
396
Normal
-0.4
444
Normal
-0.4
186
Normal
-0.4
414
Normal
-0.4
428
Normal
-0.4
535
Tumor
-0.4
426
Normal
-0.4
524
Normal
-0.4
424
Normal
-0.4
423
Tumor
-0.4
467
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
