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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL55 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
116.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
751.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
474.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
344.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
338.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
318.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
309.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
308.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
306.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
296.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
294.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
274.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
259.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
252.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
246.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
242.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
236.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
236.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
222.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
221.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
216.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
214.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
212.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
212.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
210.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
207.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
207.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
204.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
203.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
203.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
199.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
199.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
198.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
197.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
196.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
192.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
192.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
190.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
188.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
188.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
187.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
187.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
187.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
185.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
181.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
180.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
179.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
179.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
175.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
174.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
174.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
173.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
173.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
172.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
171.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
171.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
170.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
170.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
170.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
167.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
167.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
167.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
165.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
164.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
164.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
164.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
163.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
162.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
162.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
162.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
162.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
160.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
159.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
159.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
159.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
158.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
156.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
154.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
154.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
154.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
151.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
151.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
150.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
150.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
149.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
145.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
145.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
143.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
143.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
141.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
141.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
141.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
140.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
140.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
140.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
140.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
139.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
139.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
139.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
138.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
138.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
138.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
137.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
137.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
136.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
136.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
135.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
133.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
132.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
132.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
132.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
131.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
130.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
130.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
129.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
129.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
128.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
127.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
127.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
127.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
127.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
126.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
126.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
126.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
126.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
125.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
125.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
125.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
124.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
123.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
123.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
122.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
122.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
122.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
122.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
121.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
121.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
121.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
121.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
120.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
120.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
120.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
119.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
118.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
117.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
117.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
116.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
116.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
116.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
116.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
115.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
115.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
114.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
114.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
113.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
112.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
112.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
111.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
111.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
111.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
110.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
110.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
110.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
110.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
110.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
109.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
107.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
107.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
107.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
107.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
106.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
106.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
106.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
105.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
105.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
105.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
104.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
104.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
103.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
103.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
102.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
102.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
102.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
101.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
101.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
101.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
100.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
100.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
100.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
100.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
99.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
99.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
99.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
99.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
98.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
98.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
98.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
97.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
97.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
97.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
96.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
96.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
95.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
95.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
95.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
94.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
94.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
94.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
94.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
93.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
93.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
93.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
93.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
92.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
92.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
92.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
92.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
92.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
90.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
89.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
89.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
89.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
88.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
88.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
88.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
88.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
88.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
88.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
87.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
87.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
87.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
86.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
85.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
85.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
85.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
85.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
84.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
84.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
84.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
83.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
83.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
82.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
82.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
82.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
82.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
82.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
81.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
80.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
80.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
79.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
78.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
77.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
77.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
77.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
76.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
76.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
76.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
75.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
75.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
75.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
75.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
75.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
74.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
74.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
74.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
73.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
73.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
73.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
72.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
72.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
72.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
70.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
70.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
68.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
68.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
67.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
67.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
65.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
65.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
65.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
64.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
63.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
63.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
63.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
62.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
62.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
62.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
62.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
61.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
61.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
61.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
60.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
60.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
59.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
59.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
59.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
59.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
59.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
58.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
58.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
58.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
58.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
57.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
57.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
57.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
57.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
56.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
56.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
56.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
55.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
54.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
54.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
53.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
52.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
51.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
51.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
49.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
49.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
49.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
47.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
46.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
45.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
45.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
43.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
42.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
42.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
42.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
42.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
42.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
42.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
40.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
39.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
36.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
34.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MRPL55 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.8
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
324.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
227.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
189.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
185.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
172.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
146.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
136.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
132.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
130.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
123.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
121.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
111.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
109.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
108.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
106.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
106.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
103.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
103.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
103.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
101.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
101.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
95.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
94.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
94.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
94.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
94.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
93.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
91.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
89.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
87.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
87.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
85.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
85.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
85.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
85.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
83.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
83.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
82.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
80.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
79.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
77.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
76.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
76.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
75.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
74.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
73.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
73.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
72.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
72.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
72.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
71.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
71.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
71.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
71.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
70.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
69.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
68.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
68.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
66.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
66.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
65.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
64.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
64.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
63.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
61.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
61.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
59.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
59.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
58.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
57.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
57.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
57.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
57.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
56.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
56.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
56.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
56.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
55.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
55.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
55.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
54.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
54.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
54.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
54.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
54.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
53.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
53.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
53.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
53.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
50.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
50.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
49.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
49.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
49.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
49.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
49.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
49.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
49.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
49.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
49.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
48.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
48.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
46.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
46.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
45.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
45.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
44.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
44.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
44.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
43.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
43.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
43.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
42.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
42.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
42.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
41.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
41.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
41.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
41.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
40.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
39.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
39.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
39.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
38.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
38.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
38.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
36.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
36.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
36.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
36.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
36.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
35.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
35.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
33.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
33.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
33.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
32.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
32.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
27.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
26.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
26.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
24.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
23.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
23.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
361
Tumor
1.1
557
Tumor
1.1
865
Tumor
1.1
171
Tumor
1.0
741
Tumor
1.0
435
Tumor
1.0
1041
Tumor
0.9
473
Tumor
0.9
231
Tumor
0.9
267
Tumor
0.8
367
Tumor
0.8
227
Tumor
0.8
221
Tumor
0.7
571
Tumor
0.7
685
Tumor
0.7
951
Tumor
0.7
743
Tumor
0.7
823
Tumor
0.6
127
Tumor
0.6
411
Tumor
0.6
147
Tumor
0.6
451
Tumor
0.6
277
Tumor
0.6
427
Tumor
0.6
187
Tumor
0.6
123
Tumor
0.5
533
Tumor
0.5
567
Tumor
0.5
477
Tumor
0.5
128
Normal
0.5
185
Tumor
0.5
463
Tumor
0.5
467
Tumor
0.5
958
Normal
0.4
861
Tumor
0.4
355
Tumor
0.4
112
Tumor
0.4
727
Tumor
0.4
665
Tumor
0.4
213
Tumor
0.4
867
Tumor
0.4
937
Tumor
0.4
663
Tumor
0.4
327
Tumor
0.3
553
Tumor
0.3
271
Tumor
0.3
915
Tumor
0.3
981
Tumor
0.3
195
Tumor
0.3
285
Tumor
0.3
483
Tumor
0.3
911
Tumor
0.3
715
Tumor
0.3
925
Tumor
0.3
375
Tumor
0.3
363
Tumor
0.3
641
Tumor
0.3
431
Tumor
0.3
627
Tumor
0.3
883
Tumor
0.3
223
Tumor
0.3
423
Tumor
0.3
1013
Tumor
0.3
913
Tumor
0.2
964
Normal
0.2
1021
Tumor
0.2
724
Normal
0.2
436
Normal
0.2
191
Tumor
0.2
1025
Tumor
0.2
261
Tumor
0.2
331
Tumor
0.2
481
Tumor
0.2
162
Normal
0.2
313
Tumor
0.2
723
Tumor
0.2
923
Tumor
0.2
877
Tumor
0.2
944
Normal
0.2
617
Tumor
0.1
113
Tumor
0.1
537
Tumor
0.1
455
Tumor
0.1
357
Tumor
0.1
145
Tumor
0.1
1043
Tumor
0.1
648
Normal
0.1
493
Tumor
0.1
353
Tumor
0.1
713
Tumor
0.1
721
Tumor
0.1
257
Tumor
0.1
365
Tumor
0.1
647
Tumor
0.1
413
Tumor
0.1
383
Tumor
0.1
785
Tumor
0.1
695
Tumor
0.1
573
Tumor
0.1
738
Normal
0.1
351
Tumor
0.1
356
Normal
0.1
786
Normal
0.1
1031
Tumor
0.1
172
Normal
0.1
212
Normal
0.1
535
Tumor
0.1
527
Tumor
0.1
921
Tumor
0.1
471
Tumor
0.1
664
Normal
0.1
126
Normal
0.1
976
Normal
0.1
1042
Normal
0.0
465
Tumor
0.0
314
Normal
0.0
953
Tumor
0.0
217
Tumor
0.0
881
Tumor
0.0
977
Tumor
0.0
817
Tumor
0.0
328
Normal
0.0
756
Normal
0.0
196
Normal
0.0
136
Normal
0.0
697
Tumor
0.0
514
Normal
0.0
518
Normal
0.0
415
Tumor
0.0
983
Tumor
0.0
278
Normal
0.0
482
Normal
0.0
222
Normal
0.0
443
Tumor
0.0
1014
Normal
0.0
967
Tumor
0.0
188
Normal
0.0
125
Tumor
0.0
963
Tumor
0.0
497
Tumor
0.0
728
Normal
0.0
114
Normal
0.0
635
Tumor
0.0
311
Tumor
0.0
982
Normal
0.0
284
Normal
0.0
745
Tumor
0.0
851
Tumor
0.0
416
Normal
0.0
364
Normal
0.0
498
Normal
0.0
642
Normal
0.0
214
Normal
0.0
268
Normal
0.0
572
Normal
0.0
111
Normal
-0.1
468
Normal
-0.1
526
Normal
-0.1
698
Normal
-0.1
445
Tumor
-0.1
464
Normal
-0.1
148
Normal
-0.1
491
Tumor
-0.1
132
Normal
-0.1
777
Tumor
-0.1
137
Tumor
-0.1
297
Tumor
-0.1
186
Normal
-0.1
312
Normal
-0.1
494
Normal
-0.1
968
Normal
-0.1
424
Normal
-0.1
142
Normal
-0.1
487
Tumor
-0.1
722
Normal
-0.1
394
Normal
-0.1
466
Normal
-0.1
671
Tumor
-0.1
666
Normal
-0.1
358
Normal
-0.1
446
Normal
-0.1
618
Normal
-0.1
984
Normal
-0.1
628
Normal
-0.1
978
Normal
-0.1
926
Normal
-0.1
938
Normal
-0.1
737
Tumor
-0.1
966
Normal
-0.1
912
Normal
-0.1
873
Tumor
-0.1
957
Tumor
-0.1
286
Normal
-0.1
462
Normal
-0.1
344
Normal
-0.1
564
Normal
-0.1
414
Normal
-0.1
211
Tumor
-0.1
484
Normal
-0.1
388
Normal
-0.1
161
Tumor
-0.1
563
Tumor
-0.2
568
Normal
-0.2
868
Normal
-0.2
392
Normal
-0.2
448
Normal
-0.2
488
Normal
-0.2
433
Tumor
-0.2
432
Normal
-0.2
884
Normal
-0.2
662
Normal
-0.2
1032
Normal
-0.2
615
Tumor
-0.2
341
Tumor
-0.2
755
Tumor
-0.2
916
Normal
-0.2
368
Normal
-0.2
943
Tumor
-0.2
516
Normal
-0.2
954
Normal
-0.2
536
Normal
-0.2
428
Normal
-0.2
141
Tumor
-0.2
412
Normal
-0.2
1015
Tumor
-0.2
461
Tumor
-0.2
354
Normal
-0.2
878
Normal
-0.2
672
Normal
-0.2
426
Normal
-0.2
513
Tumor
-0.2
492
Normal
-0.2
444
Normal
-0.2
272
Normal
-0.2
956
Normal
-0.2
616
Normal
-0.2
384
Normal
-0.2
393
Tumor
-0.2
135
Tumor
-0.2
1016
Normal
-0.2
421
Tumor
-0.2
517
Tumor
-0.2
914
Normal
-0.2
362
Normal
-0.3
955
Tumor
-0.3
447
Tumor
-0.3
258
Normal
-0.3
862
Normal
-0.3
434
Normal
-0.3
474
Normal
-0.3
1022
Normal
-0.3
922
Normal
-0.3
422
Normal
-0.3
558
Normal
-0.3
472
Normal
-0.3
146
Normal
-0.3
918
Normal
-0.3
332
Normal
-0.3
975
Tumor
-0.3
1045
Tumor
-0.3
882
Normal
-0.3
343
Tumor
-0.3
1028
Normal
-0.3
952
Normal
-0.3
1046
Normal
-0.3
696
Normal
-0.3
138
Normal
-0.3
574
Normal
-0.3
1027
Tumor
-0.3
546
Normal
-0.3
456
Normal
-0.3
298
Normal
-0.3
262
Normal
-0.3
192
Normal
-0.3
478
Normal
-0.4
545
Tumor
-0.4
814
Normal
-0.4
228
Normal
-0.4
716
Normal
-0.4
661
Tumor
-0.4
524
Normal
-0.4
857
Tumor
-0.4
965
Tumor
-0.4
924
Normal
-0.4
425
Tumor
-0.4
636
Normal
-0.4
283
Tumor
-0.4
778
Normal
-0.4
714
Normal
-0.4
366
Normal
-0.4
224
Normal
-0.4
744
Normal
-0.4
124
Normal
-0.4
528
Normal
-0.4
452
Normal
-0.5
131
Tumor
-0.5
874
Normal
-0.5
852
Normal
-0.5
816
Normal
-0.5
863
Tumor
-0.5
232
Normal
-0.5
554
Normal
-0.5
376
Normal
-0.5
534
Normal
-0.5
386
Normal
-0.5
866
Normal
-0.5
864
Normal
-0.6
523
Tumor
-0.6
917
Tumor
-0.6
742
Normal
-0.6
1026
Normal
-0.6
813
Tumor
-0.6
396
Normal
-0.6
218
Normal
-0.6
352
Normal
-0.7
1044
Normal
-0.7
686
Normal
-0.7
342
Normal
-0.7
387
Tumor
-0.7
746
Normal
-0.7
824
Normal
-0.7
815
Tumor
-0.8
538
Normal
-0.8
515
Tumor
-0.8
818
Normal
-0.8
525
Tumor
-0.8
391
Tumor
-1.1
858
Normal
-1.1
385
Tumor
-1.2
395
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
