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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAPKAPK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
178.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
166.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
148.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
129.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
126.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
114.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
104.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
101.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
99.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
98.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
97.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
92.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
89.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
89.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
88.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
87.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
85.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
83.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
82.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
82.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
81.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
80.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
79.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
79.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
79.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
78.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
77.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
76.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
75.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
75.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
75.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
74.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
73.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
69.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
69.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
68.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
67.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
67.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
67.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
67.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
66.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
66.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
66.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
65.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
65.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
64.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
63.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
63.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
62.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
61.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
60.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
59.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
58.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
58.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
58.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
57.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
57.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
57.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
57.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
56.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
56.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
55.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
55.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
55.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
54.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
54.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
54.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
54.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
53.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
53.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
53.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
53.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
53.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
53.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
52.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
51.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
51.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
50.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
49.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
49.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
49.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
48.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
47.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
46.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
45.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
44.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
44.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
43.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
43.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
43.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
42.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
42.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
42.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
42.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
41.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
41.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
41.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
41.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
40.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
40.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
40.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
40.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
40.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
40.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
39.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
39.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
39.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
38.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
38.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
38.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
38.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
38.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
37.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
37.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
37.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
35.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
35.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
35.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
34.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
34.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
34.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
34.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
33.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
33.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
33.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
33.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
33.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
33.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
33.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
33.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
33.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
33.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
32.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
32.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
32.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
32.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
32.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
30.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
30.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
30.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
30.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
30.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
30.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
29.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
29.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
29.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
29.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
29.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
29.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
28.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
28.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
28.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
27.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
27.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
27.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
26.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
26.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
26.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
26.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
25.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
24.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
24.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
23.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
23.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
23.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
23.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
22.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
22.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
21.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
20.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
20.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
19.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
17.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
17.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
17.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
16.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
11.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
11.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAPKAPK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.4
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
176.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
102.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
92.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
91.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
85.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
78.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
76.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
76.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
69.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
68.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
67.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
67.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
67.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
66.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
65.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
64.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
63.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
60.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
60.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
60.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
60.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
60.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
59.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
59.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
58.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
58.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
57.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
57.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
56.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
56.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
55.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
55.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
54.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
54.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
54.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
53.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
52.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
50.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
50.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
49.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
48.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
48.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
47.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
46.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
46.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
45.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
45.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
45.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
45.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
45.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
44.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
44.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
43.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
43.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
43.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
42.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
42.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
41.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
40.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
40.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
39.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
38.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
37.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
37.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
36.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
36.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
36.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
35.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
35.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
35.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
34.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
34.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
34.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
34.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
33.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
33.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
32.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
32.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
31.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
31.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
30.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
30.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
29.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
29.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
27.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
27.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
24.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
24.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
23.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
23.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
22.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
21.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
20.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.2
125
Tumor
1.2
491
Tumor
1.1
777
Tumor
1.0
977
Tumor
1.0
147
Tumor
1.0
863
Tumor
0.9
533
Tumor
0.9
917
Tumor
0.9
697
Tumor
0.8
515
Tumor
0.8
943
Tumor
0.7
571
Tumor
0.7
1027
Tumor
0.7
527
Tumor
0.7
445
Tumor
0.7
713
Tumor
0.7
343
Tumor
0.7
355
Tumor
0.6
557
Tumor
0.6
1013
Tumor
0.6
663
Tumor
0.6
213
Tumor
0.6
473
Tumor
0.6
283
Tumor
0.6
573
Tumor
0.5
724
Normal
0.5
375
Tumor
0.5
953
Tumor
0.5
923
Tumor
0.5
483
Tumor
0.5
1041
Tumor
0.5
745
Tumor
0.5
525
Tumor
0.5
823
Tumor
0.5
537
Tumor
0.5
865
Tumor
0.5
911
Tumor
0.4
257
Tumor
0.4
647
Tumor
0.4
963
Tumor
0.4
415
Tumor
0.4
493
Tumor
0.4
461
Tumor
0.4
513
Tumor
0.3
311
Tumor
0.3
553
Tumor
0.3
721
Tumor
0.3
411
Tumor
0.3
313
Tumor
0.3
737
Tumor
0.3
563
Tumor
0.3
1015
Tumor
0.3
536
Normal
0.3
523
Tumor
0.3
1043
Tumor
0.3
161
Tumor
0.3
231
Tumor
0.3
477
Tumor
0.3
813
Tumor
0.3
481
Tumor
0.3
443
Tumor
0.3
487
Tumor
0.3
857
Tumor
0.3
135
Tumor
0.3
455
Tumor
0.2
447
Tumor
0.2
221
Tumor
0.2
112
Tumor
0.2
433
Tumor
0.2
1021
Tumor
0.2
195
Tumor
0.2
365
Tumor
0.2
715
Tumor
0.2
524
Normal
0.2
881
Tumor
0.2
492
Normal
0.2
913
Tumor
0.2
861
Tumor
0.2
471
Tumor
0.2
191
Tumor
0.2
211
Tumor
0.2
267
Tumor
0.2
1025
Tumor
0.2
127
Tumor
0.2
357
Tumor
0.2
925
Tumor
0.2
921
Tumor
0.2
695
Tumor
0.2
395
Tumor
0.2
916
Normal
0.2
873
Tumor
0.2
497
Tumor
0.1
785
Tumor
0.1
1031
Tumor
0.1
327
Tumor
0.1
915
Tumor
0.1
467
Tumor
0.1
361
Tumor
0.1
478
Normal
0.1
814
Normal
0.1
185
Tumor
0.1
883
Tumor
0.1
421
Tumor
0.1
877
Tumor
0.1
978
Normal
0.1
423
Tumor
0.1
227
Tumor
0.1
518
Normal
0.1
145
Tumor
0.1
126
Normal
0.1
685
Tumor
0.1
444
Normal
0.1
641
Tumor
0.1
516
Normal
0.1
955
Tumor
0.1
284
Normal
0.1
137
Tumor
0.0
224
Normal
0.0
545
Tumor
0.0
141
Tumor
0.0
966
Normal
0.0
272
Normal
0.0
851
Tumor
0.0
498
Normal
0.0
434
Normal
0.0
261
Tumor
0.0
451
Tumor
0.0
958
Normal
0.0
952
Normal
0.0
384
Normal
0.0
538
Normal
0.0
951
Tumor
0.0
297
Tumor
0.0
741
Tumor
0.0
268
Normal
0.0
1045
Tumor
0.0
111
Normal
0.0
528
Normal
0.0
277
Tumor
0.0
535
Tumor
0.0
666
Normal
0.0
918
Normal
0.0
212
Normal
0.0
975
Tumor
0.0
1044
Normal
0.0
984
Normal
0.0
867
Tumor
0.0
188
Normal
0.0
662
Normal
0.0
262
Normal
0.0
223
Tumor
0.0
1042
Normal
0.0
217
Tumor
0.0
1046
Normal
0.0
884
Normal
0.0
954
Normal
0.0
965
Tumor
0.0
192
Normal
0.0
124
Normal
0.0
385
Tumor
0.0
1014
Normal
0.0
286
Normal
0.0
938
Normal
0.0
387
Tumor
0.0
661
Tumor
-0.1
114
Normal
-0.1
228
Normal
-0.1
976
Normal
-0.1
716
Normal
-0.1
362
Normal
-0.1
924
Normal
-0.1
912
Normal
-0.1
285
Tumor
-0.1
983
Tumor
-0.1
926
Normal
-0.1
383
Tumor
-0.1
514
Normal
-0.1
981
Tumor
-0.1
131
Tumor
-0.1
671
Tumor
-0.1
956
Normal
-0.1
432
Normal
-0.1
128
Normal
-0.1
922
Normal
-0.1
367
Tumor
-0.1
816
Normal
-0.1
448
Normal
-0.1
271
Tumor
-0.1
113
Tumor
-0.1
393
Tumor
-0.1
874
Normal
-0.1
427
Tumor
-0.1
138
Normal
-0.1
944
Normal
-0.1
686
Normal
-0.1
416
Normal
-0.1
1022
Normal
-0.1
412
Normal
-0.1
648
Normal
-0.1
462
Normal
-0.1
574
Normal
-0.1
554
Normal
-0.1
746
Normal
-0.1
664
Normal
-0.1
852
Normal
-0.1
864
Normal
-0.1
558
Normal
-0.1
465
Tumor
-0.1
366
Normal
-0.1
494
Normal
-0.1
714
Normal
-0.1
868
Normal
-0.1
332
Normal
-0.1
431
Tumor
-0.1
728
Normal
-0.1
386
Normal
-0.1
146
Normal
-0.1
328
Normal
-0.1
526
Normal
-0.1
968
Normal
-0.1
778
Normal
-0.1
672
Normal
-0.1
866
Normal
-0.1
312
Normal
-0.1
1028
Normal
-0.1
756
Normal
-0.1
878
Normal
-0.1
818
Normal
-0.1
364
Normal
-0.1
564
Normal
-0.1
1016
Normal
-0.1
456
Normal
-0.1
123
Tumor
-0.1
964
Normal
-0.1
616
Normal
-0.1
187
Tumor
-0.1
482
Normal
-0.2
698
Normal
-0.2
363
Tumor
-0.2
1032
Normal
-0.2
356
Normal
-0.2
824
Normal
-0.2
982
Normal
-0.2
862
Normal
-0.2
882
Normal
-0.2
665
Tumor
-0.2
723
Tumor
-0.2
468
Normal
-0.2
517
Tumor
-0.2
1026
Normal
-0.2
436
Normal
-0.2
534
Normal
-0.2
572
Normal
-0.2
474
Normal
-0.2
817
Tumor
-0.2
142
Normal
-0.2
488
Normal
-0.2
743
Tumor
-0.2
937
Tumor
-0.2
232
Normal
-0.2
484
Normal
-0.2
298
Normal
-0.2
136
Normal
-0.2
914
Normal
-0.2
278
Normal
-0.2
424
Normal
-0.2
218
Normal
-0.2
396
Normal
-0.2
472
Normal
-0.2
446
Normal
-0.2
696
Normal
-0.2
435
Tumor
-0.2
546
Normal
-0.2
742
Normal
-0.2
738
Normal
-0.2
567
Tumor
-0.2
786
Normal
-0.2
258
Normal
-0.2
353
Tumor
-0.2
422
Normal
-0.2
858
Normal
-0.2
628
Normal
-0.2
428
Normal
-0.2
413
Tumor
-0.2
392
Normal
-0.2
132
Normal
-0.2
464
Normal
-0.2
214
Normal
-0.2
162
Normal
-0.3
722
Normal
-0.3
186
Normal
-0.3
368
Normal
-0.3
568
Normal
-0.3
615
Tumor
-0.3
344
Normal
-0.3
376
Normal
-0.3
627
Tumor
-0.3
148
Normal
-0.3
222
Normal
-0.3
354
Normal
-0.3
744
Normal
-0.3
466
Normal
-0.3
352
Normal
-0.3
414
Normal
-0.3
426
Normal
-0.3
388
Normal
-0.3
452
Normal
-0.3
196
Normal
-0.3
391
Tumor
-0.3
755
Tumor
-0.3
341
Tumor
-0.4
314
Normal
-0.4
636
Normal
-0.4
425
Tumor
-0.4
618
Normal
-0.4
358
Normal
-0.4
394
Normal
-0.4
172
Normal
-0.4
642
Normal
-0.4
331
Tumor
-0.4
351
Tumor
-0.4
171
Tumor
-0.4
342
Normal
-0.4
635
Tumor
-0.4
617
Tumor
-0.4
463
Tumor
-0.5
815
Tumor
-0.5
967
Tumor
-0.6
727
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
