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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
9.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
5.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
4.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
4.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
3.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1031
Tumor
0.7
1027
Tumor
0.6
271
Tumor
0.6
641
Tumor
0.6
357
Tumor
0.5
863
Tumor
0.5
131
Tumor
0.5
461
Tumor
0.5
473
Tumor
0.5
515
Tumor
0.5
533
Tumor
0.4
192
Normal
0.4
925
Tumor
0.4
627
Tumor
0.4
517
Tumor
0.4
777
Tumor
0.4
471
Tumor
0.4
365
Tumor
0.4
445
Tumor
0.3
536
Normal
0.3
147
Tumor
0.3
363
Tumor
0.3
524
Normal
0.3
953
Tumor
0.3
227
Tumor
0.3
553
Tumor
0.3
1042
Normal
0.3
498
Normal
0.3
537
Tumor
0.3
516
Normal
0.3
881
Tumor
0.3
921
Tumor
0.3
518
Normal
0.3
421
Tumor
0.3
852
Normal
0.3
415
Tumor
0.3
686
Normal
0.3
538
Normal
0.2
125
Tumor
0.2
815
Tumor
0.2
817
Tumor
0.2
737
Tumor
0.2
136
Normal
0.2
257
Tumor
0.2
911
Tumor
0.2
1032
Normal
0.2
224
Normal
0.2
268
Normal
0.2
434
Normal
0.2
984
Normal
0.2
884
Normal
0.2
824
Normal
0.2
617
Tumor
0.2
917
Tumor
0.2
918
Normal
0.2
384
Normal
0.2
1016
Normal
0.2
672
Normal
0.2
366
Normal
0.2
756
Normal
0.2
212
Normal
0.2
727
Tumor
0.2
513
Tumor
0.2
494
Normal
0.2
188
Normal
0.2
914
Normal
0.2
221
Tumor
0.2
492
Normal
0.2
816
Normal
0.2
362
Normal
0.2
514
Normal
0.2
786
Normal
0.2
967
Tumor
0.2
661
Tumor
0.2
728
Normal
0.2
951
Tumor
0.2
138
Normal
0.2
778
Normal
0.2
313
Tumor
0.2
628
Normal
0.2
444
Normal
0.2
1013
Tumor
0.2
412
Normal
0.2
958
Normal
0.2
738
Normal
0.2
1028
Normal
0.2
723
Tumor
0.2
916
Normal
0.2
912
Normal
0.2
1014
Normal
0.1
1022
Normal
0.1
1026
Normal
0.1
132
Normal
0.1
416
Normal
0.1
978
Normal
0.1
284
Normal
0.1
424
Normal
0.1
427
Tumor
0.1
126
Normal
0.1
1015
Tumor
0.1
482
Normal
0.1
818
Normal
0.1
975
Tumor
0.1
823
Tumor
0.1
926
Normal
0.1
858
Normal
0.1
462
Normal
0.1
664
Normal
0.1
924
Normal
0.1
721
Tumor
0.1
364
Normal
0.1
922
Normal
0.1
352
Normal
0.1
785
Tumor
0.1
527
Tumor
0.1
882
Normal
0.1
814
Normal
0.1
724
Normal
0.1
211
Tumor
0.1
272
Normal
0.1
448
Normal
0.1
124
Normal
0.1
874
Normal
0.1
428
Normal
0.1
162
Normal
0.1
982
Normal
0.1
938
Normal
0.1
746
Normal
0.1
142
Normal
0.1
484
Normal
0.1
868
Normal
0.1
744
Normal
0.1
185
Tumor
0.1
714
Normal
0.1
146
Normal
0.1
137
Tumor
0.1
311
Tumor
0.1
356
Normal
0.1
697
Tumor
0.1
873
Tumor
0.1
1045
Tumor
0.1
913
Tumor
0.1
558
Normal
0.1
186
Normal
0.1
312
Normal
0.1
743
Tumor
0.1
866
Normal
0.1
478
Normal
0.1
332
Normal
0.1
298
Normal
0.1
474
Normal
0.1
258
Normal
0.1
616
Normal
0.1
574
Normal
0.1
413
Tumor
0.1
376
Normal
0.1
383
Tumor
0.1
864
Normal
0.1
386
Normal
0.1
545
Tumor
0.1
698
Normal
0.1
965
Tumor
0.1
662
Normal
0.1
568
Normal
0.1
526
Normal
0.1
954
Normal
0.1
716
Normal
0.1
976
Normal
0.1
968
Normal
0.1
297
Tumor
0.0
554
Normal
0.0
546
Normal
0.0
228
Normal
0.0
648
Normal
0.0
391
Tumor
0.0
564
Normal
0.0
952
Normal
0.0
328
Normal
0.0
666
Normal
0.0
388
Normal
0.0
528
Normal
0.0
354
Normal
0.0
358
Normal
0.0
286
Normal
0.0
563
Tumor
0.0
218
Normal
0.0
663
Tumor
0.0
472
Normal
0.0
1021
Tumor
0.0
956
Normal
0.0
342
Normal
0.0
867
Tumor
0.0
283
Tumor
0.0
222
Normal
0.0
368
Normal
0.0
128
Normal
0.0
944
Normal
0.0
446
Normal
0.0
267
Tumor
0.0
943
Tumor
0.0
432
Normal
0.0
742
Normal
0.0
278
Normal
0.0
571
Tumor
0.0
964
Normal
0.0
431
Tumor
0.0
525
Tumor
0.0
367
Tumor
0.0
214
Normal
0.0
487
Tumor
0.0
572
Normal
0.0
695
Tumor
0.0
1046
Normal
0.0
187
Tumor
0.0
636
Normal
0.0
285
Tumor
0.0
534
Normal
0.0
344
Normal
0.0
447
Tumor
0.0
148
Normal
0.0
314
Normal
0.0
535
Tumor
0.0
161
Tumor
0.0
396
Normal
0.0
923
Tumor
0.0
1025
Tumor
0.0
331
Tumor
0.0
722
Normal
0.0
414
Normal
0.0
963
Tumor
0.0
196
Normal
0.0
883
Tumor
0.0
422
Normal
0.0
523
Tumor
0.0
671
Tumor
-0.1
618
Normal
-0.1
862
Normal
-0.1
878
Normal
-0.1
425
Tumor
-0.1
813
Tumor
-0.1
464
Normal
-0.1
426
Normal
-0.1
191
Tumor
-0.1
966
Normal
-0.1
955
Tumor
-0.1
463
Tumor
-0.1
435
Tumor
-0.1
851
Tumor
-0.1
713
Tumor
-0.1
483
Tumor
-0.1
488
Normal
-0.1
468
Normal
-0.1
615
Tumor
-0.1
172
Normal
-0.1
642
Normal
-0.1
114
Normal
-0.1
217
Tumor
-0.1
232
Normal
-0.1
857
Tumor
-0.1
262
Normal
-0.1
481
Tumor
-0.1
696
Normal
-0.1
394
Normal
-0.1
1044
Normal
-0.1
433
Tumor
-0.1
111
Normal
-0.1
466
Normal
-0.1
436
Normal
-0.1
423
Tumor
-0.1
1041
Tumor
-0.1
493
Tumor
-0.1
231
Tumor
-0.1
981
Tumor
-0.1
195
Tumor
-0.2
567
Tumor
-0.2
392
Normal
-0.2
467
Tumor
-0.2
443
Tumor
-0.2
361
Tumor
-0.2
983
Tumor
-0.2
465
Tumor
-0.2
456
Normal
-0.2
455
Tumor
-0.2
573
Tumor
-0.2
145
Tumor
-0.2
491
Tumor
-0.2
213
Tumor
-0.2
351
Tumor
-0.2
141
Tumor
-0.2
375
Tumor
-0.2
112
Tumor
-0.2
647
Tumor
-0.2
341
Tumor
-0.2
957
Tumor
-0.2
385
Tumor
-0.2
395
Tumor
-0.2
277
Tumor
-0.2
977
Tumor
-0.2
113
Tumor
-0.2
477
Tumor
-0.3
452
Normal
-0.3
127
Tumor
-0.3
685
Tumor
-0.3
353
Tumor
-0.3
393
Tumor
-0.3
223
Tumor
-0.3
343
Tumor
-0.3
861
Tumor
-0.3
755
Tumor
-0.3
327
Tumor
-0.3
451
Tumor
-0.3
355
Tumor
-0.3
123
Tumor
-0.3
135
Tumor
-0.3
745
Tumor
-0.3
387
Tumor
-0.4
171
Tumor
-0.4
877
Tumor
-0.4
665
Tumor
-0.4
1043
Tumor
-0.4
741
Tumor
-0.4
557
Tumor
-0.4
715
Tumor
-0.4
411
Tumor
-0.4
497
Tumor
-0.5
915
Tumor
-0.5
261
Tumor
-0.5
937
Tumor
-0.6
635
Tumor
-0.6
865
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
