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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BROX is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
39.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
36.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
28.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
28.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
27.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
26.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
23.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
15.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
14.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
14.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
14.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
14.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
13.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
13.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
11.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
10.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BROX is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
34.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
22.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
18.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
6.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
5.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
5.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
3.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
1.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
1.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
1.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
1.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
1.3
977
Tumor
1.2
1021
Tumor
1.1
131
Tumor
1.1
553
Tumor
1.1
271
Tumor
1.0
777
Tumor
1.0
445
Tumor
1.0
911
Tumor
0.9
1027
Tumor
0.9
411
Tumor
0.9
685
Tumor
0.9
313
Tumor
0.9
863
Tumor
0.9
641
Tumor
0.8
357
Tumor
0.8
1031
Tumor
0.8
257
Tumor
0.8
277
Tumor
0.8
527
Tumor
0.7
191
Tumor
0.7
393
Tumor
0.7
697
Tumor
0.7
523
Tumor
0.7
135
Tumor
0.7
975
Tumor
0.7
951
Tumor
0.7
471
Tumor
0.7
881
Tumor
0.6
443
Tumor
0.6
741
Tumor
0.6
865
Tumor
0.6
431
Tumor
0.6
823
Tumor
0.6
343
Tumor
0.6
517
Tumor
0.6
877
Tumor
0.6
1013
Tumor
0.6
817
Tumor
0.6
743
Tumor
0.6
1041
Tumor
0.5
477
Tumor
0.5
867
Tumor
0.5
921
Tumor
0.5
221
Tumor
0.5
171
Tumor
0.5
745
Tumor
0.5
425
Tumor
0.5
515
Tumor
0.5
297
Tumor
0.5
497
Tumor
0.5
813
Tumor
0.4
635
Tumor
0.4
1043
Tumor
0.4
647
Tumor
0.4
957
Tumor
0.4
213
Tumor
0.4
1025
Tumor
0.4
571
Tumor
0.4
211
Tumor
0.4
724
Normal
0.4
185
Tumor
0.4
112
Tumor
0.4
375
Tumor
0.3
721
Tumor
0.3
883
Tumor
0.3
963
Tumor
0.3
125
Tumor
0.3
283
Tumor
0.3
483
Tumor
0.3
533
Tumor
0.3
715
Tumor
0.3
491
Tumor
0.3
141
Tumor
0.3
557
Tumor
0.3
525
Tumor
0.3
493
Tumor
0.3
361
Tumor
0.3
663
Tumor
0.2
331
Tumor
0.2
227
Tumor
0.2
231
Tumor
0.2
435
Tumor
0.2
461
Tumor
0.2
665
Tumor
0.2
573
Tumor
0.2
873
Tumor
0.2
567
Tumor
0.2
327
Tumor
0.2
917
Tumor
0.2
923
Tumor
0.2
473
Tumor
0.2
857
Tumor
0.2
537
Tumor
0.2
123
Tumor
0.2
737
Tumor
0.2
433
Tumor
0.1
145
Tumor
0.1
451
Tumor
0.1
713
Tumor
0.1
617
Tumor
0.1
915
Tumor
0.1
953
Tumor
0.1
925
Tumor
0.1
311
Tumor
0.1
513
Tumor
0.1
814
Normal
0.1
187
Tumor
0.0
421
Tumor
0.0
267
Tumor
0.0
463
Tumor
0.0
314
Normal
0.0
351
Tumor
0.0
481
Tumor
0.0
695
Tumor
0.0
785
Tumor
0.0
615
Tumor
0.0
455
Tumor
0.0
415
Tumor
0.0
127
Tumor
0.0
355
Tumor
0.0
738
Normal
-0.1
563
Tumor
-0.1
192
Normal
-0.1
913
Tumor
-0.1
137
Tumor
-0.1
981
Tumor
-0.1
332
Normal
-0.1
395
Tumor
-0.1
278
Normal
-0.1
385
Tumor
-0.1
924
Normal
-0.1
746
Normal
-0.1
298
Normal
-0.1
627
Tumor
-0.1
261
Tumor
-0.1
161
Tumor
-0.1
436
Normal
-0.1
272
Normal
-0.1
427
Tumor
-0.1
465
Tumor
-0.1
312
Normal
-0.1
268
Normal
-0.2
487
Tumor
-0.2
728
Normal
-0.2
744
Normal
-0.2
1015
Tumor
-0.2
912
Normal
-0.2
456
Normal
-0.2
444
Normal
-0.2
353
Tumor
-0.2
467
Tumor
-0.2
447
Tumor
-0.2
786
Normal
-0.2
386
Normal
-0.2
432
Normal
-0.2
727
Tumor
-0.2
186
Normal
-0.2
383
Tumor
-0.2
642
Normal
-0.2
422
Normal
-0.2
195
Tumor
-0.2
756
Normal
-0.2
222
Normal
-0.2
618
Normal
-0.2
778
Normal
-0.2
188
Normal
-0.2
262
Normal
-0.2
258
Normal
-0.2
217
Tumor
-0.2
196
Normal
-0.2
546
Normal
-0.2
564
Normal
-0.2
146
Normal
-0.2
938
Normal
-0.2
162
Normal
-0.2
416
Normal
-0.2
228
Normal
-0.2
214
Normal
-0.2
232
Normal
-0.2
534
Normal
-0.2
328
Normal
-0.2
574
Normal
-0.3
742
Normal
-0.3
482
Normal
-0.3
132
Normal
-0.3
568
Normal
-0.3
914
Normal
-0.3
472
Normal
-0.3
968
Normal
-0.3
224
Normal
-0.3
818
Normal
-0.3
462
Normal
-0.3
1026
Normal
-0.3
423
Tumor
-0.3
126
Normal
-0.3
952
Normal
-0.3
714
Normal
-0.3
498
Normal
-0.3
424
Normal
-0.3
387
Tumor
-0.3
1042
Normal
-0.3
434
Normal
-0.3
516
Normal
-0.3
446
Normal
-0.3
464
Normal
-0.3
172
Normal
-0.3
878
Normal
-0.3
966
Normal
-0.3
572
Normal
-0.3
364
Normal
-0.3
862
Normal
-0.3
124
Normal
-0.3
558
Normal
-0.3
478
Normal
-0.3
884
Normal
-0.3
956
Normal
-0.3
545
Tumor
-0.3
944
Normal
-0.3
716
Normal
-0.3
136
Normal
-0.3
452
Normal
-0.3
696
Normal
-0.3
412
Normal
-0.3
114
Normal
-0.3
864
Normal
-0.3
514
Normal
-0.3
358
Normal
-0.3
861
Tumor
-0.3
218
Normal
-0.3
528
Normal
-0.3
391
Tumor
-0.3
983
Tumor
-0.3
526
Normal
-0.3
722
Normal
-0.3
212
Normal
-0.3
755
Tumor
-0.3
354
Normal
-0.3
943
Tumor
-0.3
874
Normal
-0.3
958
Normal
-0.3
858
Normal
-0.3
388
Normal
-0.3
284
Normal
-0.3
882
Normal
-0.3
1022
Normal
-0.3
342
Normal
-0.3
686
Normal
-0.3
698
Normal
-0.3
524
Normal
-0.3
113
Tumor
-0.3
964
Normal
-0.3
538
Normal
-0.3
918
Normal
-0.3
148
Normal
-0.4
648
Normal
-0.4
426
Normal
-0.4
976
Normal
-0.4
466
Normal
-0.4
664
Normal
-0.4
1016
Normal
-0.4
484
Normal
-0.4
824
Normal
-0.4
916
Normal
-0.4
518
Normal
-0.4
868
Normal
-0.4
384
Normal
-0.4
368
Normal
-0.4
138
Normal
-0.4
286
Normal
-0.4
536
Normal
-0.4
492
Normal
-0.4
428
Normal
-0.4
954
Normal
-0.4
922
Normal
-0.4
1028
Normal
-0.4
474
Normal
-0.4
1045
Tumor
-0.4
628
Normal
-0.4
366
Normal
-0.4
392
Normal
-0.4
448
Normal
-0.4
661
Tumor
-0.4
414
Normal
-0.4
111
Normal
-0.4
666
Normal
-0.4
636
Normal
-0.4
816
Normal
-0.4
128
Normal
-0.4
852
Normal
-0.4
396
Normal
-0.4
723
Tumor
-0.4
815
Tumor
-0.4
926
Normal
-0.4
851
Tumor
-0.4
142
Normal
-0.4
468
Normal
-0.4
488
Normal
-0.4
341
Tumor
-0.4
1044
Normal
-0.4
356
Normal
-0.4
223
Tumor
-0.4
1046
Normal
-0.4
662
Normal
-0.4
376
Normal
-0.4
362
Normal
-0.4
554
Normal
-0.4
616
Normal
-0.4
866
Normal
-0.5
965
Tumor
-0.5
344
Normal
-0.5
1032
Normal
-0.5
494
Normal
-0.5
967
Tumor
-0.5
982
Normal
-0.5
984
Normal
-0.5
1014
Normal
-0.5
978
Normal
-0.5
394
Normal
-0.5
413
Tumor
-0.5
672
Normal
-0.5
955
Tumor
-0.6
937
Tumor
-0.6
352
Normal
-0.6
535
Tumor
-0.6
365
Tumor
-0.6
285
Tumor
-0.6
671
Tumor
-0.7
363
Tumor
-0.7
367
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
