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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEA15 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
224.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
188.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
185.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
182.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
170.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
169.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
164.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
159.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
151.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
146.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
145.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
142.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
140.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
139.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
131.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
130.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
128.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
127.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
125.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
125.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
118.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
112.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
110.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
109.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
108.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
108.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
107.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
105.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
101.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
99.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
98.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
97.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
97.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
96.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
96.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
95.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
95.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
93.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
90.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
88.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
87.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
86.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
85.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
85.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
84.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
84.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
83.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
83.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
83.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
83.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
82.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
82.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
81.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
81.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
80.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
80.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
80.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
79.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
79.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
78.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
78.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
78.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
78.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
76.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
75.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
75.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
74.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
73.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
73.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
73.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
72.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
72.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
72.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
72.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
71.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
71.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
69.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
69.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
68.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
68.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
68.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
68.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
67.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
67.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
67.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
67.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
66.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
66.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
66.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
65.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
65.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
65.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
64.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
64.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
64.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
63.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
63.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
62.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
62.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
60.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
59.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
59.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
59.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
59.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
58.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
58.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
58.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
58.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
58.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
56.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
56.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
56.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
56.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
54.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
54.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
54.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
54.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
53.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
53.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
52.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
52.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
52.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
52.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
52.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
51.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
51.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
51.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
49.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
48.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
48.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
48.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
48.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
45.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
45.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
44.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
44.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
44.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
44.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
44.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
44.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
43.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
43.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
43.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
42.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
42.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
42.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
42.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
41.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
41.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
41.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
40.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
40.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
40.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
40.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
39.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
39.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
39.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
39.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
39.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
39.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
38.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
38.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
38.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
38.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
38.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
38.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
37.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
37.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
36.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
36.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
36.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
36.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
36.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
36.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
35.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
35.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
35.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
35.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
35.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
35.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
35.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
35.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
35.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
34.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
34.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
34.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
34.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
34.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
33.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
33.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
33.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
33.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
32.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
32.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
31.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
31.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
31.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
30.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
30.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
30.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
29.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
29.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
29.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
29.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
28.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
27.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
27.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
27.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
26.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
26.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
25.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
25.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
25.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
24.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
23.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
23.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
23.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
23.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
22.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
22.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
22.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
22.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
21.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
20.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
18.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
18.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
17.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
14.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
11.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PEA15 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
53.6
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
240.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
181.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
159.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
157.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
156.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
156.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
135.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
128.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
125.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
123.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
118.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
117.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
117.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
117.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
113.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
108.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
104.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
99.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
98.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
97.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
93.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
91.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
90.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
87.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
85.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
85.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
85.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
84.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
83.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
82.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
81.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
80.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
80.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
80.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
77.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
77.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
77.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
76.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
75.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
74.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
74.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
73.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
73.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
73.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
73.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
72.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
72.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
71.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
71.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
69.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
68.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
67.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
67.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
67.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
67.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
65.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
65.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
65.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
64.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
63.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
63.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
63.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
63.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
62.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
62.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
61.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
60.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
59.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
58.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
57.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
57.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
57.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
56.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
56.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
56.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
56.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
56.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
55.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
55.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
55.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
54.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
53.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
53.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
53.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
53.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
52.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
51.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
51.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
50.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
50.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
49.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
48.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
48.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
48.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
47.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
47.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
47.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
47.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
46.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
46.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
46.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
45.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
44.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
43.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
43.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
43.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
42.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
42.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
41.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
41.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
41.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
41.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
39.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
39.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
39.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
38.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
37.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
36.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
35.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
35.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
34.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
32.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
32.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
31.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
31.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
30.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
30.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
30.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
29.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
29.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
28.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
26.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
25.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
23.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
22.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
22.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
21.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
19.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.1
813
Tumor
1.0
641
Tumor
0.9
147
Tumor
0.8
921
Tumor
0.8
567
Tumor
0.8
271
Tumor
0.7
777
Tumor
0.7
231
Tumor
0.7
663
Tumor
0.7
211
Tumor
0.7
311
Tumor
0.7
715
Tumor
0.7
463
Tumor
0.6
375
Tumor
0.6
427
Tumor
0.6
1031
Tumor
0.6
977
Tumor
0.6
525
Tumor
0.6
863
Tumor
0.6
647
Tumor
0.6
817
Tumor
0.6
883
Tumor
0.5
724
Normal
0.5
213
Tumor
0.5
185
Tumor
0.5
455
Tumor
0.5
343
Tumor
0.5
743
Tumor
0.5
881
Tumor
0.5
1027
Tumor
0.5
923
Tumor
0.5
283
Tumor
0.4
814
Normal
0.4
171
Tumor
0.4
357
Tumor
0.4
161
Tumor
0.4
221
Tumor
0.4
563
Tumor
0.4
975
Tumor
0.4
515
Tumor
0.4
425
Tumor
0.4
277
Tumor
0.4
517
Tumor
0.4
1013
Tumor
0.4
125
Tumor
0.4
223
Tumor
0.3
1021
Tumor
0.3
571
Tumor
0.3
421
Tumor
0.3
1043
Tumor
0.3
447
Tumor
0.3
444
Normal
0.3
661
Tumor
0.3
665
Tumor
0.3
313
Tumor
0.3
737
Tumor
0.3
443
Tumor
0.3
192
Normal
0.3
573
Tumor
0.3
671
Tumor
0.3
471
Tumor
0.3
135
Tumor
0.3
415
Tumor
0.3
965
Tumor
0.3
123
Tumor
0.2
461
Tumor
0.2
297
Tumor
0.2
383
Tumor
0.2
685
Tumor
0.2
823
Tumor
0.2
913
Tumor
0.2
217
Tumor
0.2
435
Tumor
0.2
851
Tumor
0.2
815
Tumor
0.2
536
Normal
0.2
393
Tumor
0.2
721
Tumor
0.2
857
Tumor
0.2
865
Tumor
0.2
487
Tumor
0.2
355
Tumor
0.2
713
Tumor
0.2
478
Normal
0.2
387
Tumor
0.2
483
Tumor
0.2
385
Tumor
0.2
498
Normal
0.1
127
Tumor
0.1
191
Tumor
0.1
963
Tumor
0.1
187
Tumor
0.1
785
Tumor
0.1
617
Tumor
0.1
527
Tumor
0.1
451
Tumor
0.1
411
Tumor
0.1
467
Tumor
0.1
745
Tumor
0.1
727
Tumor
0.1
915
Tumor
0.1
493
Tumor
0.1
877
Tumor
0.1
331
Tumor
0.1
553
Tumor
0.1
911
Tumor
0.1
1025
Tumor
0.1
917
Tumor
0.1
873
Tumor
0.0
1015
Tumor
0.0
916
Normal
0.0
195
Tumor
0.0
545
Tumor
0.0
188
Normal
0.0
852
Normal
0.0
434
Normal
0.0
433
Tumor
0.0
957
Tumor
0.0
391
Tumor
0.0
341
Tumor
0.0
1032
Normal
0.0
365
Tumor
0.0
983
Tumor
0.0
953
Tumor
0.0
126
Normal
0.0
697
Tumor
0.0
943
Tumor
0.0
363
Tumor
-0.1
112
Tumor
-0.1
224
Normal
-0.1
491
Tumor
-0.1
395
Tumor
-0.1
978
Normal
-0.1
1041
Tumor
-0.1
1028
Normal
-0.1
635
Tumor
-0.1
131
Tumor
-0.1
124
Normal
-0.1
386
Normal
-0.1
351
Tumor
-0.1
477
Tumor
-0.1
327
Tumor
-0.1
958
Normal
-0.1
741
Tumor
-0.1
312
Normal
-0.1
268
Normal
-0.1
557
Tumor
-0.1
1045
Tumor
-0.1
966
Normal
-0.2
1022
Normal
-0.2
672
Normal
-0.2
1026
Normal
-0.2
361
Tumor
-0.2
492
Normal
-0.2
141
Tumor
-0.2
146
Normal
-0.2
627
Tumor
-0.2
982
Normal
-0.2
278
Normal
-0.2
218
Normal
-0.2
261
Tumor
-0.2
884
Normal
-0.2
666
Normal
-0.2
137
Tumor
-0.2
332
Normal
-0.2
535
Tumor
-0.2
214
Normal
-0.2
716
Normal
-0.2
523
Tumor
-0.2
1044
Normal
-0.2
145
Tumor
-0.2
262
Normal
-0.2
816
Normal
-0.2
984
Normal
-0.2
664
Normal
-0.2
473
Tumor
-0.2
874
Normal
-0.2
744
Normal
-0.2
558
Normal
-0.2
868
Normal
-0.2
162
Normal
-0.2
615
Tumor
-0.2
662
Normal
-0.2
861
Tumor
-0.3
284
Normal
-0.3
344
Normal
-0.3
951
Tumor
-0.3
481
Tumor
-0.3
742
Normal
-0.3
572
Normal
-0.3
516
Normal
-0.3
537
Tumor
-0.3
186
Normal
-0.3
384
Normal
-0.3
524
Normal
-0.3
314
Normal
-0.3
298
Normal
-0.3
686
Normal
-0.3
138
Normal
-0.3
431
Tumor
-0.3
257
Tumor
-0.3
538
Normal
-0.3
867
Tumor
-0.3
497
Tumor
-0.3
227
Tumor
-0.3
142
Normal
-0.3
212
Normal
-0.3
786
Normal
-0.3
148
Normal
-0.3
367
Tumor
-0.3
412
Normal
-0.3
533
Tumor
-0.3
196
Normal
-0.3
114
Normal
-0.3
738
Normal
-0.3
924
Normal
-0.3
778
Normal
-0.3
976
Normal
-0.3
394
Normal
-0.3
981
Tumor
-0.3
396
Normal
-0.3
714
Normal
-0.3
723
Tumor
-0.3
392
Normal
-0.3
413
Tumor
-0.4
285
Tumor
-0.4
914
Normal
-0.4
695
Tumor
-0.4
1042
Normal
-0.4
968
Normal
-0.4
922
Normal
-0.4
362
Normal
-0.4
696
Normal
-0.4
172
Normal
-0.4
628
Normal
-0.4
366
Normal
-0.4
878
Normal
-0.4
267
Tumor
-0.4
818
Normal
-0.4
648
Normal
-0.4
925
Tumor
-0.4
636
Normal
-0.4
862
Normal
-0.4
354
Normal
-0.4
1014
Normal
-0.4
866
Normal
-0.4
698
Normal
-0.4
918
Normal
-0.4
423
Tumor
-0.4
616
Normal
-0.4
864
Normal
-0.4
432
Normal
-0.4
228
Normal
-0.4
368
Normal
-0.4
746
Normal
-0.4
286
Normal
-0.4
272
Normal
-0.4
111
Normal
-0.4
376
Normal
-0.4
574
Normal
-0.4
113
Tumor
-0.4
136
Normal
-0.4
488
Normal
-0.4
967
Tumor
-0.4
422
Normal
-0.5
222
Normal
-0.5
352
Normal
-0.5
518
Normal
-0.5
728
Normal
-0.5
474
Normal
-0.5
494
Normal
-0.5
514
Normal
-0.5
388
Normal
-0.5
882
Normal
-0.5
353
Tumor
-0.5
468
Normal
-0.5
448
Normal
-0.5
232
Normal
-0.5
513
Tumor
-0.5
926
Normal
-0.5
952
Normal
-0.5
128
Normal
-0.5
426
Normal
-0.5
528
Normal
-0.5
546
Normal
-0.5
462
Normal
-0.5
416
Normal
-0.5
568
Normal
-0.5
465
Tumor
-0.5
954
Normal
-0.5
466
Normal
-0.5
1046
Normal
-0.5
424
Normal
-0.5
756
Normal
-0.6
446
Normal
-0.6
912
Normal
-0.6
364
Normal
-0.6
824
Normal
-0.6
472
Normal
-0.6
642
Normal
-0.6
484
Normal
-0.6
722
Normal
-0.6
456
Normal
-0.6
938
Normal
-0.6
436
Normal
-0.6
258
Normal
-0.6
1016
Normal
-0.6
955
Tumor
-0.6
858
Normal
-0.6
482
Normal
-0.6
428
Normal
-0.6
956
Normal
-0.6
755
Tumor
-0.6
132
Normal
-0.6
964
Normal
-0.6
414
Normal
-0.6
554
Normal
-0.6
534
Normal
-0.7
356
Normal
-0.7
564
Normal
-0.7
328
Normal
-0.7
464
Normal
-0.7
944
Normal
-0.7
452
Normal
-0.7
618
Normal
-0.8
526
Normal
-0.8
342
Normal
-0.8
937
Tumor
-0.8
358
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
